Wall clock time and date at job start Tue Mar 31 2020 14:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47011 * 239.99269 * 3 2 1 5 5 H 1.48498 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47083 * 119.99857 * 3 2 1 7 7 C 1.37876 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99490 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00127 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64293 * 300.70575 * 9 7 2 11 11 C 1.55154 * 110.72137 * 177.56108 * 9 7 2 12 12 C 1.54914 * 101.58047 * 205.96239 * 11 9 7 13 13 N 1.47423 * 104.83550 * 37.00666 * 12 11 9 14 14 C 1.34775 * 125.64753 * 155.90650 * 13 12 11 15 15 O 1.21572 * 119.99717 * 175.01498 * 14 13 12 16 16 C 1.47722 * 120.00122 * 355.01816 * 14 13 12 17 17 C 1.39668 * 120.12246 * 55.84722 * 16 14 13 18 18 C 1.37809 * 119.88207 * 179.76946 * 17 16 14 19 19 C 1.38675 * 120.11731 * 0.51226 * 18 17 16 20 20 F 1.35103 * 119.88271 * 179.76413 * 19 18 17 21 21 C 1.38634 * 120.24255 * 359.74320 * 19 18 17 22 22 C 1.37860 * 120.11598 * 359.97438 * 21 19 18 23 23 N 1.48011 * 120.06208 * 179.97438 * 22 21 19 24 24 O 1.21805 * 119.99847 * 6.71275 * 23 22 21 25 25 O 1.21795 * 120.00199 * 186.72009 * 23 22 21 26 26 C 1.47020 * 108.69912 * 335.87412 * 13 12 11 27 27 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 28 28 H 0.96703 * 113.99970 * 56.85320 * 10 9 7 29 29 H 1.09006 * 111.00138 * 324.03034 * 11 9 7 30 30 H 1.08996 * 111.00836 * 87.84745 * 11 9 7 31 31 H 1.09004 * 110.36770 * 155.84943 * 12 11 9 32 32 H 1.09000 * 110.36260 * 278.16499 * 12 11 9 33 33 H 1.08000 * 120.05462 * 0.02783 * 17 16 14 34 34 H 1.08001 * 119.94618 * 180.27754 * 18 17 16 35 35 H 1.07997 * 119.94473 * 179.97438 * 21 19 18 36 36 H 1.09007 * 109.87876 * 241.63582 * 26 13 12 37 37 H 1.09002 * 109.88108 * 120.48227 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.4082 -2.5932 1.1519 11 6 2.2321 -3.6995 -0.0596 12 6 1.3482 -4.7905 -0.7142 13 7 0.5271 -4.0681 -1.7027 14 6 -0.0389 -4.6094 -2.7995 15 8 -0.7724 -3.9382 -3.4991 16 6 0.2320 -6.0182 -3.1516 17 6 -0.0243 -7.0335 -2.2273 18 6 0.2258 -8.3465 -2.5627 19 6 0.7410 -8.6597 -3.8115 20 9 0.9889 -9.9482 -4.1336 21 6 1.0023 -7.6556 -4.7309 22 6 0.7503 -6.3392 -4.4079 23 7 1.0302 -5.2681 -5.3902 24 8 1.3668 -5.5552 -6.5250 25 8 0.9241 -4.0995 -5.0638 26 6 0.4272 -2.6595 -1.2934 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2239 -1.8664 1.2368 29 1 3.0942 -3.4679 -0.6852 30 1 2.5466 -3.9986 0.9402 31 1 1.9703 -5.5358 -1.2098 32 1 0.7124 -5.2631 0.0345 33 1 -0.4216 -6.7902 -1.2530 34 1 0.0238 -9.1328 -1.8503 35 1 1.4038 -7.9049 -5.7020 36 1 -0.6148 -2.4015 -1.1043 37 1 0.8346 -2.0169 -2.0739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:15 Heat of formation + Delta-G solvation = -110.322501 kcal Electronic energy + Delta-G solvation = -27961.469804 eV Core-core repulsion = 23621.446206 eV Total energy + Delta-G solvation = -4340.023598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.28212 -43.46519 -41.49088 -39.96577 -38.86458 -37.71172 -36.17121 -34.19854 -33.39230 -32.81549 -31.51633 -29.63683 -28.18441 -27.09547 -25.33201 -24.11473 -23.70166 -21.61107 -21.25858 -20.37323 -19.81005 -19.18965 -18.81355 -18.57357 -17.92326 -17.67956 -17.41689 -16.95881 -16.82441 -16.48866 -16.16485 -15.62655 -15.06384 -14.88376 -14.82510 -14.55779 -14.43118 -13.97787 -13.73538 -13.52642 -13.32055 -13.15476 -12.85439 -12.81463 -12.56881 -12.38016 -12.36691 -12.34057 -12.20509 -12.11195 -11.29122 -11.18662 -10.95318 -10.65240 -10.38666 -10.29006 -9.66159 -8.28170 -6.43671 -1.58965 -0.64782 0.01255 0.13209 1.34827 1.41568 1.43843 1.50654 1.71510 2.00909 2.37414 2.60144 2.98734 3.02644 3.08477 3.41524 3.47983 3.70096 3.75246 4.03746 4.10949 4.20807 4.33108 4.41299 4.49337 4.57023 4.63143 4.67081 4.94542 5.01784 5.09104 5.17071 5.20981 5.36043 5.47721 5.73796 6.02305 6.27855 6.46881 6.63142 6.95655 7.27661 7.35436 8.77601 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003812 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.841374 B = 7342.958534 C = 8145.426301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.237 3.763 10 O -0.584 6.584 11 C -0.114 4.114 12 C 0.101 3.899 13 N -0.603 5.603 14 C 0.555 3.445 15 O -0.562 6.562 16 C -0.079 4.079 17 C -0.049 4.049 18 C -0.066 4.066 19 C 0.133 3.867 20 F -0.110 7.110 21 C -0.088 4.088 22 C -0.003 4.003 23 N 0.020 4.980 24 O -0.129 6.129 25 O -0.201 6.201 26 C 0.124 3.876 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.186 0.814 34 H 0.213 0.787 35 H 0.185 0.815 36 H 0.036 0.964 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -22.056 -1.949 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.600 4.600 8 H 0.084 0.916 9 C 0.197 3.803 10 O -0.392 6.392 11 C -0.151 4.151 12 C -0.020 4.020 13 N -0.335 5.335 14 C 0.343 3.657 15 O -0.441 6.441 16 C -0.084 4.084 17 C -0.068 4.068 18 C -0.084 4.084 19 C 0.112 3.888 20 F -0.088 7.088 21 C -0.108 4.108 22 C -0.086 4.086 23 N 0.537 4.463 24 O -0.356 6.356 25 O -0.404 6.404 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.203 0.797 34 H 0.230 0.770 35 H 0.202 0.798 36 H 0.054 0.946 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.832 -22.626 -1.738 22.767 hybrid contribution -0.082 2.415 -0.975 2.606 sum 1.750 -20.211 -2.712 20.467 Atomic orbital electron populations 1.69720 1.07009 1.28613 1.50065 1.25770 0.95787 1.02696 0.93017 0.85577 0.78452 0.78629 0.78837 1.20194 1.20894 1.18994 1.21833 0.93982 0.91533 1.52609 0.91572 1.19625 0.86587 0.93461 0.80667 1.86052 1.53558 1.52332 1.47303 1.22751 0.96912 0.93677 1.01803 1.22667 0.93450 0.95139 0.90761 1.48666 1.50046 1.11666 1.23090 1.18018 0.80872 0.86668 0.80152 1.90818 1.38740 1.62941 1.51576 1.19925 1.00106 0.95238 0.93117 1.21589 0.95935 0.89997 0.99278 1.22005 0.93373 0.97856 0.95155 1.17366 0.99352 0.78468 0.93581 1.91642 1.91507 1.32804 1.92894 1.21001 0.98762 0.87854 1.03175 1.20800 1.10499 0.87827 0.89515 1.43898 0.97871 1.02702 1.01791 1.94425 1.46791 1.88803 1.05538 1.94812 1.57779 1.03315 1.84492 1.22567 0.99658 0.79198 0.98495 0.91971 0.77209 0.90537 0.88371 0.88493 0.88586 0.79690 0.77047 0.79760 0.94590 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.66 10.97 21.45 0.24 -49.42 16 2 C 0.03 1.49 5.26 84.65 0.45 1.94 16 3 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.56 -29.28 8.12 25.60 0.21 -29.07 16 8 H 0.07 3.36 7.77 -2.91 -0.02 3.34 16 9 C 0.24 11.13 0.86 -10.35 -0.01 11.13 16 10 O -0.58 -28.05 13.09 -148.98 -1.95 -30.00 16 11 C -0.11 -4.08 6.22 31.99 0.20 -3.88 16 12 C 0.10 2.94 5.67 86.86 0.49 3.43 16 13 N -0.60 -23.72 3.33 -815.32 -2.71 -26.43 16 14 C 0.56 21.89 5.86 86.75 0.51 22.40 16 15 O -0.56 -27.92 15.18 18.98 0.29 -27.64 16 16 C -0.08 -2.14 4.98 -20.09 -0.10 -2.24 16 17 C -0.05 -0.73 8.40 22.51 0.19 -0.54 16 18 C -0.07 -0.50 10.01 22.27 0.22 -0.28 16 19 C 0.13 1.49 7.31 22.47 0.16 1.65 16 20 F -0.11 -1.15 17.26 44.97 0.78 -0.37 16 21 C -0.09 -1.51 9.53 22.27 0.21 -1.29 16 22 C 0.00 -0.07 6.85 36.63 0.25 0.18 16 23 N 0.02 0.73 4.45 -45.88 -0.20 0.52 16 24 O -0.13 -4.27 18.47 18.88 0.35 -3.92 16 25 O -0.20 -9.07 15.04 26.15 0.39 -8.68 16 26 C 0.12 6.11 5.40 86.73 0.47 6.57 16 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.38 19.31 7.17 -74.06 -0.53 18.78 16 29 H 0.08 2.74 8.04 -2.38 -0.02 2.72 16 30 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.10 2.11 7.30 -2.39 -0.02 2.10 16 32 H 0.10 2.33 7.87 -2.39 -0.02 2.31 16 33 H 0.19 2.00 7.47 -2.91 -0.02 1.98 16 34 H 0.21 -0.31 8.06 -2.91 -0.02 -0.34 16 35 H 0.19 2.55 7.62 -2.91 -0.02 2.52 16 36 H 0.04 1.96 8.01 -2.38 -0.02 1.94 16 37 H 0.03 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -74.77 326.69 3.07 -71.70 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.62 Total: 19.86 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 3.25 Total: 10.01 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.68 Total: -75.33 kcal Atomic # 8 Polarization: -69.31 SS G_CDS: -0.92 Total: -70.23 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.78 Total: -0.37 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -74.77 3.07 -71.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.622 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds