Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47092 * 240.00515 * 3 2 1 5 5 H 1.48495 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46845 * 120.00513 * 3 2 1 7 7 C 1.37879 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47167 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.35321 * 125.86424 * 125.29579 * 11 10 9 13 13 C 1.35353 * 106.17265 * 180.19197 * 12 11 10 14 14 C 1.50699 * 126.75259 * 179.85344 * 13 12 11 15 15 H 1.09002 * 109.46959 * 4.70904 * 14 13 12 16 16 N 1.46899 * 109.47244 * 244.71026 * 14 13 12 17 17 C 1.50703 * 109.47227 * 124.70906 * 14 13 12 18 18 C 1.38228 * 119.99786 * 99.72554 * 17 14 13 19 19 C 1.38208 * 120.03329 * 179.72428 * 18 17 14 20 20 C 1.38381 * 120.03930 * 0.55292 * 19 18 17 21 21 Cl 1.73597 * 119.99888 * 179.74428 * 20 19 18 22 22 C 1.38293 * 119.99927 * 359.72432 * 20 19 18 23 23 C 1.38444 * 119.99748 * 280.00310 * 17 14 13 24 24 F 1.35094 * 120.02118 * 359.97438 * 23 17 14 25 25 N 1.33777 * 106.49709 * 359.59001 * 13 12 11 26 26 N 1.28632 * 108.88270 * 0.26172 * 25 13 12 27 27 H 0.97000 * 120.00260 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47286 * 59.99952 * 9 7 2 29 29 H 1.09001 * 109.47383 * 300.00014 * 9 7 2 30 30 H 1.08998 * 109.47255 * 60.00252 * 10 9 7 31 31 H 1.09000 * 109.47351 * 299.99848 * 10 9 7 32 32 H 1.07998 * 126.91810 * 0.04150 * 12 11 10 33 33 H 1.00903 * 110.99833 * 299.99603 * 16 14 13 34 34 H 1.00901 * 111.00152 * 63.94840 * 16 14 13 35 35 H 1.07992 * 119.98245 * 0.02562 * 18 17 14 36 36 H 1.08002 * 119.97654 * 180.27077 * 19 18 17 37 37 H 1.08003 * 120.01897 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 1.6643 -5.9340 -0.8966 13 6 0.7963 -6.9042 -0.5261 14 6 0.5810 -8.2304 -1.2087 15 1 1.2992 -8.3416 -2.0211 16 7 -0.7833 -8.2866 -1.7502 17 6 0.7725 -9.3450 -0.2127 18 6 -0.3265 -9.9460 0.3718 19 6 -0.1519 -10.9721 1.2810 20 6 1.1236 -11.3914 1.6159 21 17 1.3419 -12.6759 2.7630 22 6 2.2244 -10.7873 1.0363 23 6 2.0494 -9.7632 0.1211 24 9 3.1239 -9.1726 -0.4461 25 7 0.1711 -6.4568 0.5688 26 7 0.6183 -5.2848 0.8538 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8877 31 1 2.8713 -3.6039 -0.8923 32 1 2.3398 -5.9553 -1.7389 33 1 -1.4682 -8.1858 -1.0161 34 1 -0.9168 -7.5896 -2.4674 35 1 -1.3223 -9.6168 0.1142 36 1 -1.0114 -11.4439 1.7338 37 1 3.2201 -11.1146 1.2971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = 63.305931 kcal Electronic energy + Delta-G solvation = -23930.134530 eV Core-core repulsion = 20070.641941 eV Total energy + Delta-G solvation = -3859.492588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.12156 -42.93303 -39.57333 -37.03748 -35.89330 -34.73287 -32.85907 -31.08138 -30.49199 -30.46595 -29.85395 -25.69458 -25.56147 -23.09213 -22.72838 -22.23184 -21.31776 -19.92839 -18.18902 -17.24301 -16.98572 -16.45171 -16.23657 -15.83470 -15.79320 -15.56401 -14.95231 -14.61999 -14.59123 -14.15612 -13.96105 -13.63470 -13.47874 -13.39943 -13.07815 -12.50685 -11.95164 -11.80215 -11.63639 -11.54955 -11.30411 -11.27061 -11.14286 -10.91170 -10.67959 -10.43016 -10.09979 -9.54105 -9.50264 -9.34968 -9.20736 -8.81170 -8.77322 -8.57826 -6.22209 -4.29411 0.71596 0.87300 1.74240 1.98061 2.72243 2.86276 3.20349 3.20761 3.26598 3.28000 3.98731 4.11605 4.28106 4.43836 4.46351 4.65201 4.71018 4.91079 4.98421 5.13843 5.15404 5.26603 5.28866 5.52298 5.63429 5.70579 5.78470 5.87893 6.00124 6.10235 6.22004 6.32907 6.47036 6.82776 6.91907 7.19276 7.32047 7.42486 7.71932 8.03881 8.75413 8.87187 9.36510 10.88733 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.002379 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.888646 B =11765.167370 C =11957.030570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.110 3.890 11 N -0.267 5.267 12 C -0.040 4.040 13 C -0.081 4.081 14 C 0.227 3.773 15 H 0.108 0.892 16 N -0.829 5.829 17 C -0.091 4.091 18 C -0.050 4.050 19 C -0.120 4.120 20 C -0.011 4.011 21 Cl -0.064 7.064 22 C -0.150 4.150 23 C 0.120 3.880 24 F -0.130 7.130 25 N -0.274 5.274 26 N -0.069 5.069 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.348 0.652 34 H 0.351 0.649 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -23.002 -1.855 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.021 4.021 10 C -0.009 4.009 11 N -0.060 5.060 12 C -0.194 4.194 13 C -0.222 4.222 14 C 0.113 3.887 15 H 0.126 0.874 16 N -0.359 5.359 17 C -0.092 4.092 18 C -0.069 4.069 19 C -0.139 4.139 20 C -0.038 4.038 21 Cl -0.035 7.035 22 C -0.169 4.169 23 C 0.099 3.901 24 F -0.108 7.108 25 N -0.140 5.140 26 N -0.049 5.049 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.625 -23.253 -0.739 23.322 hybrid contribution 1.409 1.855 -0.573 2.399 sum 3.034 -21.398 -1.311 21.652 Atomic orbital electron populations 1.69957 1.06182 1.27348 1.48879 1.24999 0.94896 0.99526 0.94586 0.86525 0.79505 0.82459 0.78778 1.20043 1.21067 1.19980 1.20889 0.93017 0.90063 1.53314 0.92140 1.19387 0.93768 0.89735 0.99212 1.22793 0.95862 0.78471 1.03738 1.47972 1.25651 1.15203 1.17132 1.23404 1.05461 0.90069 1.00427 1.22621 1.01091 0.99559 0.98952 1.18297 0.92943 0.84532 0.92935 0.87443 1.59179 1.02610 1.56900 1.17210 1.19761 0.91721 0.98204 0.99560 1.20791 0.99126 0.93524 0.93411 1.21110 0.95700 0.98165 0.98924 1.20573 0.94318 0.93500 0.95400 1.98381 1.97575 1.48859 1.58659 1.20866 0.99793 0.97559 0.98708 1.17215 0.83001 0.94190 0.95649 1.91516 1.53710 1.82556 1.83028 1.74983 1.22499 1.03640 1.12877 1.78338 1.03629 1.08220 1.14692 0.92470 0.95880 0.94441 0.89113 0.88662 0.79876 0.83720 0.83595 0.83593 0.84206 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.41 5.10 -27.89 -0.14 0.27 16 10 C 0.11 2.05 6.39 -4.04 -0.03 2.02 16 11 N -0.27 -4.85 3.44 -61.26 -0.21 -5.06 16 12 C -0.04 -0.59 11.49 -17.04 -0.20 -0.79 16 13 C -0.08 -1.19 6.02 -82.77 -0.50 -1.69 16 14 C 0.23 2.57 3.20 -70.02 -0.22 2.35 16 15 H 0.11 1.09 7.93 -51.93 -0.41 0.68 16 16 N -0.83 -8.18 8.70 -6.65 -0.06 -8.23 16 17 C -0.09 -1.04 5.07 -104.55 -0.53 -1.57 16 18 C -0.05 -0.51 9.25 -39.60 -0.37 -0.87 16 19 C -0.12 -1.13 9.83 -39.54 -0.39 -1.52 16 20 C -0.01 -0.11 6.32 -39.51 -0.25 -0.36 16 21 Cl -0.06 -0.58 28.96 -51.86 -1.50 -2.08 16 22 C -0.15 -1.57 9.81 -39.48 -0.39 -1.96 16 23 C 0.12 1.40 7.24 -39.42 -0.29 1.12 16 24 F -0.13 -1.59 16.66 2.25 0.04 -1.55 16 25 N -0.27 -4.93 12.40 33.29 0.41 -4.52 16 26 N -0.07 -1.40 12.91 60.35 0.78 -0.62 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.10 1.52 8.07 -51.93 -0.42 1.10 16 32 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.35 3.48 7.28 -39.29 -0.29 3.19 16 34 H 0.35 3.21 9.06 -39.29 -0.36 2.86 16 35 H 0.15 1.28 6.25 -52.49 -0.33 0.95 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -30.46 344.70 -7.21 -37.68 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.88 Total: 4.26 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.70 Total: -15.65 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 1.66 Total: -43.34 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.46 -7.21 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.981 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds