Wall clock time and date at job start Tue Mar 31 2020 14:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47092 * 240.00515 * 3 2 1 5 5 H 1.48495 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46845 * 120.00513 * 3 2 1 7 7 C 1.37879 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47167 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.35321 * 125.86424 * 125.29579 * 11 10 9 13 13 C 1.35353 * 106.17265 * 180.19197 * 12 11 10 14 14 C 1.50699 * 126.75259 * 179.85344 * 13 12 11 15 15 H 1.09002 * 109.46959 * 4.70904 * 14 13 12 16 16 N 1.46899 * 109.47244 * 244.71026 * 14 13 12 17 17 C 1.50703 * 109.47227 * 124.70906 * 14 13 12 18 18 C 1.38228 * 119.99786 * 99.72554 * 17 14 13 19 19 C 1.38208 * 120.03329 * 179.72428 * 18 17 14 20 20 C 1.38381 * 120.03930 * 0.55292 * 19 18 17 21 21 Cl 1.73597 * 119.99888 * 179.74428 * 20 19 18 22 22 C 1.38293 * 119.99927 * 359.72432 * 20 19 18 23 23 C 1.38444 * 119.99748 * 280.00310 * 17 14 13 24 24 F 1.35094 * 120.02118 * 359.97438 * 23 17 14 25 25 N 1.33777 * 106.49709 * 359.59001 * 13 12 11 26 26 N 1.28632 * 108.88270 * 0.26172 * 25 13 12 27 27 H 0.97000 * 120.00260 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47286 * 59.99952 * 9 7 2 29 29 H 1.09001 * 109.47383 * 300.00014 * 9 7 2 30 30 H 1.08998 * 109.47255 * 60.00252 * 10 9 7 31 31 H 1.09000 * 109.47351 * 299.99848 * 10 9 7 32 32 H 1.07998 * 126.91810 * 0.04150 * 12 11 10 33 33 H 1.00903 * 110.99833 * 299.99603 * 16 14 13 34 34 H 1.00901 * 111.00152 * 63.94840 * 16 14 13 35 35 H 1.07992 * 119.98245 * 0.02562 * 18 17 14 36 36 H 1.08002 * 119.97654 * 180.27077 * 19 18 17 37 37 H 1.08003 * 120.01897 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 1.6643 -5.9340 -0.8966 13 6 0.7963 -6.9042 -0.5261 14 6 0.5810 -8.2304 -1.2087 15 1 1.2992 -8.3416 -2.0211 16 7 -0.7833 -8.2866 -1.7502 17 6 0.7725 -9.3450 -0.2127 18 6 -0.3265 -9.9460 0.3718 19 6 -0.1519 -10.9721 1.2810 20 6 1.1236 -11.3914 1.6159 21 17 1.3419 -12.6759 2.7630 22 6 2.2244 -10.7873 1.0363 23 6 2.0494 -9.7632 0.1211 24 9 3.1239 -9.1726 -0.4461 25 7 0.1711 -6.4568 0.5688 26 7 0.6183 -5.2848 0.8538 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8877 31 1 2.8713 -3.6039 -0.8923 32 1 2.3398 -5.9553 -1.7389 33 1 -1.4682 -8.1858 -1.0161 34 1 -0.9168 -7.5896 -2.4674 35 1 -1.3223 -9.6168 0.1142 36 1 -1.0114 -11.4439 1.7338 37 1 3.2201 -11.1146 1.2971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:15 Heat of formation + Delta-G solvation = 43.975857 kcal Electronic energy + Delta-G solvation = -23930.972744 eV Core-core repulsion = 20070.641941 eV Total energy + Delta-G solvation = -3860.330803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.99924 -44.23769 -40.37579 -37.84574 -36.99452 -36.11410 -34.66661 -32.04056 -31.75569 -31.32648 -31.28001 -27.40937 -26.56418 -24.33207 -23.89391 -23.37584 -22.60574 -21.15608 -19.07821 -18.86794 -17.86077 -17.74647 -17.46314 -17.04559 -16.78388 -16.49357 -16.37095 -16.01313 -15.44042 -15.39151 -15.06119 -14.82641 -14.46420 -14.34389 -14.18734 -13.88287 -13.61998 -13.04256 -12.78445 -12.77799 -12.58893 -12.45805 -12.25225 -12.21618 -12.02789 -11.99897 -11.71056 -11.49257 -10.94308 -10.63964 -10.48724 -10.00057 -9.84470 -9.61140 -8.28300 -6.42643 -0.09685 0.08113 0.70354 0.98442 1.40332 1.44009 1.47608 1.51144 1.56222 2.37697 2.39095 3.07102 3.16418 3.23223 3.39412 3.67083 3.76638 3.85188 3.97007 3.99936 4.11358 4.21470 4.22590 4.47376 4.52206 4.53020 4.80981 4.89425 4.94812 5.07639 5.10806 5.25473 5.26938 5.42676 5.55506 5.67079 5.74984 5.99567 6.02834 6.39934 6.73357 7.28701 7.54696 8.83904 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.002379 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.888646 B =11765.167370 C =11957.030570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.026 3.974 10 C 0.124 3.876 11 N -0.278 5.278 12 C -0.033 4.033 13 C -0.076 4.076 14 C 0.232 3.768 15 H 0.124 0.876 16 N -0.821 5.821 17 C -0.104 4.104 18 C -0.056 4.056 19 C -0.117 4.117 20 C -0.017 4.017 21 Cl -0.056 7.056 22 C -0.154 4.154 23 C 0.103 3.897 24 F -0.136 7.136 25 N -0.286 5.286 26 N -0.125 5.125 27 H 0.265 0.735 28 H -0.007 1.007 29 H -0.004 1.004 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.225 0.775 33 H 0.348 0.652 34 H 0.355 0.645 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -23.899 -2.706 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.098 0.902 9 C -0.012 4.012 10 C 0.005 3.995 11 N -0.070 5.070 12 C -0.186 4.186 13 C -0.218 4.218 14 C 0.117 3.883 15 H 0.142 0.858 16 N -0.350 5.350 17 C -0.106 4.106 18 C -0.074 4.074 19 C -0.136 4.136 20 C -0.044 4.044 21 Cl -0.027 7.027 22 C -0.173 4.173 23 C 0.083 3.917 24 F -0.114 7.114 25 N -0.152 5.152 26 N -0.104 5.104 27 H 0.074 0.926 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.242 0.758 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.149 -24.170 -1.583 24.425 hybrid contribution 0.889 1.980 -0.312 2.193 sum 4.038 -22.190 -1.895 22.634 Atomic orbital electron populations 1.70118 1.08183 1.28208 1.50647 1.26026 0.95670 1.03759 0.94233 0.85385 0.78089 0.77403 0.79501 1.18449 1.21421 1.19019 1.21419 0.94117 0.90799 1.51977 0.90228 1.19111 0.94130 0.92149 0.95781 1.22510 0.94269 0.76937 1.05791 1.47878 1.25728 1.15581 1.17814 1.24159 1.05385 0.88763 1.00295 1.23247 0.99998 1.00744 0.97787 1.18422 0.93959 0.82807 0.93088 0.85820 1.59189 1.01925 1.56846 1.17082 1.19865 0.92058 0.98586 1.00067 1.20998 0.99379 0.93627 0.93385 1.21379 0.96277 0.97644 0.98285 1.20704 0.94487 0.93684 0.95479 1.98384 1.97572 1.48405 1.58296 1.21036 1.00630 0.97268 0.98382 1.17386 0.82990 0.94900 0.96402 1.91492 1.53970 1.82758 1.83221 1.74919 1.22881 1.03169 1.14203 1.78340 1.05706 1.09620 1.16738 0.92613 0.98834 0.98567 0.88419 0.85199 0.75807 0.83786 0.83035 0.82502 0.82111 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -28.42 9.11 25.60 0.23 -28.18 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.31 5.10 29.85 0.15 1.46 16 10 C 0.12 4.52 6.39 86.38 0.55 5.07 16 11 N -0.28 -9.95 3.44 -347.74 -1.20 -11.15 16 12 C -0.03 -0.91 11.49 83.49 0.96 0.05 16 13 C -0.08 -2.13 6.02 41.60 0.25 -1.88 16 14 C 0.23 4.85 3.20 43.42 0.14 4.99 16 15 H 0.12 2.20 7.93 -2.39 -0.02 2.18 16 16 N -0.82 -14.88 8.70 -174.95 -1.52 -16.40 16 17 C -0.10 -2.24 5.07 -19.82 -0.10 -2.34 16 18 C -0.06 -1.05 9.25 22.26 0.21 -0.84 16 19 C -0.12 -2.00 9.83 22.30 0.22 -1.78 16 20 C -0.02 -0.31 6.32 22.32 0.14 -0.17 16 21 Cl -0.06 -0.92 28.96 -2.72 -0.08 -1.00 16 22 C -0.15 -3.04 9.81 22.34 0.22 -2.82 16 23 C 0.10 2.29 7.24 22.37 0.16 2.45 16 24 F -0.14 -3.15 16.66 44.97 0.75 -2.40 16 25 N -0.29 -10.33 12.40 -48.60 -0.60 -10.93 16 26 N -0.12 -5.17 12.91 37.02 0.48 -4.70 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.00 -0.24 8.12 -2.39 -0.02 -0.26 16 30 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.13 3.79 8.07 -2.39 -0.02 3.78 16 32 H 0.23 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.35 6.54 7.28 -89.69 -0.65 5.89 16 34 H 0.36 5.93 9.06 -89.69 -0.81 5.12 16 35 H 0.16 2.52 6.25 -2.91 -0.02 2.51 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -67.85 344.70 3.41 -64.44 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.32 Total: 16.92 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.59 Total: -23.43 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -2.56 Total: -98.35 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.75 Total: -2.40 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -67.85 3.41 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.415 kcal (2) G-P(sol) polarization free energy of solvation -67.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds