Wall clock time and date at job start Tue Mar 31 2020 14:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48499 * 109.46970 * 270.00269 * 3 2 1 5 5 H 1.48504 * 109.47287 * 29.99721 * 3 2 1 6 6 H 1.48499 * 109.47530 * 149.99693 * 3 2 1 7 7 C 1.37868 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47383 * 179.97438 * 10 9 7 12 12 C 1.35319 * 125.86767 * 124.99970 * 11 10 9 13 13 C 1.35352 * 106.17519 * 179.97438 * 12 11 10 14 14 C 1.50700 * 126.75466 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47709 * 245.00616 * 14 13 12 16 16 N 1.46906 * 109.46749 * 5.00241 * 14 13 12 17 17 C 1.50700 * 109.47350 * 125.00046 * 14 13 12 18 18 C 1.38222 * 120.00187 * 265.00880 * 17 14 13 19 19 C 1.38206 * 120.04037 * 179.97438 * 18 17 14 20 20 C 1.38377 * 120.03608 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 120.00035 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.00193 * 359.97438 * 20 19 18 23 23 C 1.38450 * 119.99629 * 84.99951 * 17 14 13 24 24 F 1.35092 * 120.01788 * 0.03055 * 23 17 14 25 25 N 1.33770 * 106.49750 * 0.26552 * 13 12 11 26 26 N 1.28643 * 108.88498 * 359.55962 * 25 13 12 27 27 H 0.96999 * 120.00615 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47482 * 60.00651 * 9 7 2 29 29 H 1.08994 * 109.47405 * 299.99992 * 9 7 2 30 30 H 1.09002 * 109.47349 * 60.00333 * 10 9 7 31 31 H 1.08998 * 109.47180 * 300.00370 * 10 9 7 32 32 H 1.08002 * 126.91337 * 0.02562 * 12 11 10 33 33 H 1.00907 * 110.99937 * 59.99865 * 16 14 13 34 34 H 1.00904 * 110.99913 * 183.94852 * 16 14 13 35 35 H 1.08005 * 119.98233 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.97690 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.02489 * 179.73130 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1938 0.0000 10 6 4.0216 -2.6363 0.0001 11 7 5.4866 -2.6363 -0.0011 12 6 6.2802 -3.2649 0.8968 13 6 7.5542 -3.0038 0.5217 14 6 8.8107 -3.4811 1.2033 15 1 9.3540 -2.6255 1.6042 16 7 8.4570 -4.3935 2.2989 17 6 9.6788 -4.2053 0.2068 18 6 9.6080 -5.5816 0.1003 19 6 10.4034 -6.2466 -0.8137 20 6 11.2719 -5.5353 -1.6228 21 17 12.2701 -6.3715 -2.7710 22 6 11.3440 -4.1583 -1.5175 23 6 10.5470 -3.4921 -0.6020 24 9 10.6168 -2.1470 -0.4978 25 7 7.4788 -2.2336 -0.5694 26 7 6.2401 -2.0387 -0.8566 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8745 -0.6806 -0.8905 30 1 3.6581 -3.1504 -0.8897 31 1 3.6587 -3.1500 0.8903 32 1 5.9612 -3.8566 1.7421 33 1 7.9520 -5.1956 1.9527 34 1 9.2779 -4.6772 2.8126 35 1 8.9302 -6.1377 0.7310 36 1 10.3475 -7.3220 -0.8958 37 1 12.0249 -3.6032 -2.1457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:18 Heat of formation + Delta-G solvation = 70.031751 kcal Electronic energy + Delta-G solvation = -23998.515912 eV Core-core repulsion = 20139.314977 eV Total energy + Delta-G solvation = -3859.200935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.07905 -42.93736 -39.78804 -37.19538 -35.97291 -34.93163 -32.81606 -31.18827 -30.70006 -30.28696 -30.23781 -26.16093 -25.55090 -23.20841 -22.67562 -22.06050 -21.05917 -20.04771 -18.24571 -17.59755 -17.08977 -16.61923 -16.44216 -15.92033 -15.77473 -15.56263 -15.07320 -14.69949 -14.36116 -14.28354 -14.04292 -13.69697 -13.66206 -13.57200 -12.89352 -12.80684 -12.37766 -11.90437 -11.84189 -11.67793 -11.42493 -11.39236 -11.18065 -10.70916 -10.66942 -10.29462 -9.99789 -9.53792 -9.49855 -9.43376 -9.28109 -8.95296 -8.88330 -8.70240 -6.21936 -4.24459 0.53781 0.70420 1.61062 1.99317 2.73261 2.84217 3.03348 3.25185 3.32504 3.37854 3.88752 3.99631 4.21335 4.27408 4.32711 4.51296 4.58949 4.75449 5.05551 5.07792 5.11442 5.17675 5.28591 5.41553 5.52039 5.58796 5.68266 5.70625 5.80447 6.02327 6.12159 6.27007 6.35624 6.66046 6.80632 7.00070 7.04303 7.07448 7.52851 8.26234 8.76968 8.87828 9.38229 10.90091 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.002540 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.361297 B =11021.348895 C =11125.488071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.077 0.923 9 C -0.020 4.020 10 C 0.121 3.879 11 N -0.275 5.275 12 C -0.029 4.029 13 C -0.038 4.038 14 C 0.230 3.770 15 H 0.109 0.891 16 N -0.831 5.831 17 C -0.141 4.141 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.009 4.009 21 Cl -0.060 7.060 22 C -0.148 4.148 23 C 0.143 3.857 24 F -0.118 7.118 25 N -0.272 5.272 26 N -0.077 5.077 27 H 0.267 0.733 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.344 0.656 34 H 0.352 0.648 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.826 -15.175 2.280 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.095 0.905 9 C -0.058 4.058 10 C 0.002 3.998 11 N -0.068 5.068 12 C -0.181 4.181 13 C -0.178 4.178 14 C 0.116 3.884 15 H 0.127 0.873 16 N -0.361 5.361 17 C -0.145 4.145 18 C -0.098 4.098 19 C -0.139 4.139 20 C -0.036 4.036 21 Cl -0.031 7.031 22 C -0.168 4.168 23 C 0.123 3.877 24 F -0.096 7.096 25 N -0.139 5.139 26 N -0.056 5.056 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.207 0.793 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 23.284 -13.572 1.214 26.978 hybrid contribution 0.774 -0.280 0.272 0.867 sum 24.057 -13.853 1.486 27.800 Atomic orbital electron populations 1.69880 1.06251 1.27371 1.49648 1.24912 0.94737 0.99196 0.93864 0.86789 0.80276 0.83399 0.78990 1.19849 1.21082 1.19041 1.20780 0.87998 0.95049 1.53082 0.90455 1.19862 0.97962 0.89697 0.98317 1.22519 0.69308 1.03509 1.04434 1.47955 1.10617 1.30924 1.17314 1.23275 0.90350 1.04893 0.99595 1.21294 0.93807 1.04528 0.98130 1.18158 0.88693 0.94912 0.86658 0.87296 1.58767 1.29294 1.22417 1.25645 1.20894 0.98423 0.94791 1.00367 1.20757 0.98279 0.92682 0.98119 1.21019 0.96140 1.00814 0.95942 1.20596 0.96315 0.91910 0.94730 1.98390 1.68171 1.77816 1.58745 1.21008 1.02065 0.93245 1.00489 1.17201 0.96490 0.77754 0.96275 1.91579 1.94953 1.28330 1.94742 1.75028 1.10458 1.14981 1.13385 1.78331 0.95588 1.16727 1.14991 0.92321 0.95774 0.94965 0.88652 0.88058 0.79349 0.84106 0.83337 0.84350 0.84229 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.53 -14.18 9.66 -34.45 -0.33 -14.51 16 8 H 0.08 2.15 7.99 -52.48 -0.42 1.73 16 9 C -0.02 -0.46 4.17 -27.89 -0.12 -0.58 16 10 C 0.12 2.18 6.39 -4.04 -0.03 2.15 16 11 N -0.28 -4.85 3.44 -61.26 -0.21 -5.06 16 12 C -0.03 -0.41 10.74 -17.04 -0.18 -0.59 16 13 C -0.04 -0.56 6.42 -82.78 -0.53 -1.09 16 14 C 0.23 2.46 3.30 -70.01 -0.23 2.23 16 15 H 0.11 1.24 7.79 -51.93 -0.40 0.83 16 16 N -0.83 -6.07 8.21 -6.65 -0.05 -6.13 16 17 C -0.14 -1.42 5.03 -104.55 -0.53 -1.95 16 18 C -0.08 -0.62 9.27 -39.60 -0.37 -0.99 16 19 C -0.12 -0.93 9.83 -39.54 -0.39 -1.32 16 20 C -0.01 -0.08 6.32 -39.51 -0.25 -0.33 16 21 Cl -0.06 -0.50 28.96 -51.86 -1.50 -2.00 16 22 C -0.15 -1.47 9.81 -39.48 -0.39 -1.86 16 23 C 0.14 1.63 7.24 -39.42 -0.29 1.35 16 24 F -0.12 -1.57 16.57 2.25 0.04 -1.53 16 25 N -0.27 -5.02 12.40 33.29 0.41 -4.61 16 26 N -0.08 -1.53 12.91 60.35 0.78 -0.75 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 29 H 0.03 0.77 7.55 -51.93 -0.39 0.38 16 30 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 31 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 32 H 0.19 2.05 7.88 -52.49 -0.41 1.64 16 33 H 0.34 2.03 7.02 -39.29 -0.28 1.75 16 34 H 0.35 1.82 9.06 -39.29 -0.36 1.46 16 35 H 0.14 0.71 6.29 -52.48 -0.33 0.38 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -32.16 339.73 -6.85 -39.01 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.82 Total: 0.23 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.72 Total: -15.45 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.70 Total: -42.26 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -6.85 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.043 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds