Wall clock time and date at job start Tue Mar 31 2020 14:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48499 * 109.46970 * 270.00269 * 3 2 1 5 5 H 1.48504 * 109.47287 * 29.99721 * 3 2 1 6 6 H 1.48499 * 109.47530 * 149.99693 * 3 2 1 7 7 C 1.37868 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47383 * 179.97438 * 10 9 7 12 12 C 1.35319 * 125.86767 * 124.99970 * 11 10 9 13 13 C 1.35352 * 106.17519 * 179.97438 * 12 11 10 14 14 C 1.50700 * 126.75466 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47709 * 245.00616 * 14 13 12 16 16 N 1.46906 * 109.46749 * 5.00241 * 14 13 12 17 17 C 1.50700 * 109.47350 * 125.00046 * 14 13 12 18 18 C 1.38222 * 120.00187 * 265.00880 * 17 14 13 19 19 C 1.38206 * 120.04037 * 179.97438 * 18 17 14 20 20 C 1.38377 * 120.03608 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 120.00035 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.00193 * 359.97438 * 20 19 18 23 23 C 1.38450 * 119.99629 * 84.99951 * 17 14 13 24 24 F 1.35092 * 120.01788 * 0.03055 * 23 17 14 25 25 N 1.33770 * 106.49750 * 0.26552 * 13 12 11 26 26 N 1.28643 * 108.88498 * 359.55962 * 25 13 12 27 27 H 0.96999 * 120.00615 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47482 * 60.00651 * 9 7 2 29 29 H 1.08994 * 109.47405 * 299.99992 * 9 7 2 30 30 H 1.09002 * 109.47349 * 60.00333 * 10 9 7 31 31 H 1.08998 * 109.47180 * 300.00370 * 10 9 7 32 32 H 1.08002 * 126.91337 * 0.02562 * 12 11 10 33 33 H 1.00907 * 110.99937 * 59.99865 * 16 14 13 34 34 H 1.00904 * 110.99913 * 183.94852 * 16 14 13 35 35 H 1.08005 * 119.98233 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.97690 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.02489 * 179.73130 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1938 0.0000 10 6 4.0216 -2.6363 0.0001 11 7 5.4866 -2.6363 -0.0011 12 6 6.2802 -3.2649 0.8968 13 6 7.5542 -3.0038 0.5217 14 6 8.8107 -3.4811 1.2033 15 1 9.3540 -2.6255 1.6042 16 7 8.4570 -4.3935 2.2989 17 6 9.6788 -4.2053 0.2068 18 6 9.6080 -5.5816 0.1003 19 6 10.4034 -6.2466 -0.8137 20 6 11.2719 -5.5353 -1.6228 21 17 12.2701 -6.3715 -2.7710 22 6 11.3440 -4.1583 -1.5175 23 6 10.5470 -3.4921 -0.6020 24 9 10.6168 -2.1470 -0.4978 25 7 7.4788 -2.2336 -0.5694 26 7 6.2401 -2.0387 -0.8566 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8745 -0.6806 -0.8905 30 1 3.6581 -3.1504 -0.8897 31 1 3.6587 -3.1500 0.8903 32 1 5.9612 -3.8566 1.7421 33 1 7.9520 -5.1956 1.9527 34 1 9.2779 -4.6772 2.8126 35 1 8.9302 -6.1377 0.7310 36 1 10.3475 -7.3220 -0.8958 37 1 12.0249 -3.6032 -2.1457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:17 Heat of formation + Delta-G solvation = 48.572869 kcal Electronic energy + Delta-G solvation = -23999.446439 eV Core-core repulsion = 20139.314977 eV Total energy + Delta-G solvation = -3860.131462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.96834 -44.20201 -40.48993 -37.90497 -36.97348 -36.22577 -34.70865 -32.18334 -31.94869 -31.41410 -31.08628 -27.65263 -26.61228 -24.07554 -23.82233 -23.33879 -22.33178 -21.26454 -19.33016 -18.98691 -18.04427 -17.81549 -17.44136 -16.97479 -16.78882 -16.45171 -16.31431 -15.86068 -15.53047 -15.39813 -15.10214 -14.87407 -14.79645 -14.48426 -14.27516 -13.86362 -13.65144 -13.20141 -13.02097 -12.71335 -12.55234 -12.46648 -12.29966 -12.15652 -12.06385 -11.93148 -11.75092 -11.55522 -10.91195 -10.84403 -10.23004 -10.07162 -9.87829 -9.64536 -8.37580 -6.42477 -0.17129 0.01337 0.75353 0.94128 1.29826 1.33311 1.42322 1.53401 1.56934 2.27898 2.30781 2.98244 3.12048 3.23406 3.46925 3.58505 3.65614 3.90277 3.93898 4.03352 4.09201 4.17600 4.31561 4.42153 4.52275 4.54847 4.75296 4.85597 4.89921 5.02680 5.04703 5.08319 5.14547 5.29695 5.43514 5.61664 5.76718 6.05592 6.12959 6.57592 6.64563 7.23157 7.59605 8.77479 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.002540 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.361297 B =11021.348895 C =11125.488071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.059 0.941 9 C -0.015 4.015 10 C 0.132 3.868 11 N -0.283 5.283 12 C -0.014 4.014 13 C -0.038 4.038 14 C 0.238 3.762 15 H 0.098 0.902 16 N -0.823 5.823 17 C -0.148 4.148 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.015 4.015 21 Cl -0.056 7.056 22 C -0.158 4.158 23 C 0.114 3.886 24 F -0.138 7.138 25 N -0.295 5.295 26 N -0.128 5.128 27 H 0.269 0.731 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.229 0.771 33 H 0.356 0.644 34 H 0.368 0.632 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.024 -17.238 3.624 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.053 4.053 10 C 0.012 3.988 11 N -0.076 5.076 12 C -0.166 4.166 13 C -0.178 4.178 14 C 0.123 3.877 15 H 0.116 0.884 16 N -0.357 5.357 17 C -0.152 4.152 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.042 4.042 21 Cl -0.026 7.026 22 C -0.177 4.177 23 C 0.094 3.906 24 F -0.117 7.117 25 N -0.161 5.161 26 N -0.107 5.107 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 24.509 -15.645 2.553 29.188 hybrid contribution 0.469 0.224 -0.131 0.536 sum 24.977 -15.421 2.422 29.454 Atomic orbital electron populations 1.69989 1.07703 1.28284 1.51631 1.25690 0.95410 1.02552 0.94080 0.85887 0.79198 0.79933 0.78963 1.19779 1.20344 1.18603 1.21095 0.90089 0.94166 1.51274 0.92295 1.19666 0.95392 0.93068 0.97156 1.22288 0.69890 1.00340 1.06237 1.47869 1.10296 1.31496 1.17890 1.23926 0.89701 1.03728 0.99251 1.21940 0.95595 1.03291 0.97014 1.18018 0.86842 0.95525 0.87307 0.88408 1.58703 1.30219 1.22594 1.24186 1.20954 0.98282 0.95729 1.00250 1.21107 0.98136 0.91717 0.97980 1.21383 0.94924 1.02115 0.94854 1.20753 0.96709 0.91652 0.95097 1.98393 1.68110 1.77510 1.58636 1.21099 1.02179 0.93960 1.00476 1.17544 0.98107 0.77178 0.97776 1.91520 1.95258 1.29851 1.95034 1.74983 1.10090 1.15936 1.15079 1.78329 0.96387 1.19084 1.16871 0.92155 0.96340 0.96490 0.88233 0.85031 0.75485 0.82789 0.81587 0.81135 0.81600 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.96 21.44 0.30 -55.80 16 2 C 0.02 1.22 5.47 84.65 0.46 1.69 16 3 Si 0.94 44.58 27.47 68.60 1.88 46.47 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -12.18 6.54 99.48 0.65 -11.53 16 7 C -0.53 -28.18 9.66 25.60 0.25 -27.93 16 8 H 0.06 3.29 7.99 -2.91 -0.02 3.27 16 9 C -0.01 -0.65 4.17 29.85 0.12 -0.53 16 10 C 0.13 4.50 6.39 86.38 0.55 5.05 16 11 N -0.28 -9.49 3.44 -347.73 -1.20 -10.68 16 12 C -0.01 -0.35 10.74 83.49 0.90 0.54 16 13 C -0.04 -1.05 6.42 41.60 0.27 -0.78 16 14 C 0.24 4.59 3.30 43.42 0.14 4.73 16 15 H 0.10 2.13 7.79 -2.39 -0.02 2.11 16 16 N -0.82 -8.98 8.21 -174.95 -1.44 -10.42 16 17 C -0.15 -2.73 5.03 -19.82 -0.10 -2.83 16 18 C -0.07 -0.87 9.27 22.26 0.21 -0.67 16 19 C -0.11 -1.42 9.83 22.30 0.22 -1.20 16 20 C -0.02 -0.25 6.32 22.32 0.14 -0.11 16 21 Cl -0.06 -0.84 28.96 -2.72 -0.08 -0.92 16 22 C -0.16 -3.07 9.81 22.34 0.22 -2.86 16 23 C 0.11 2.58 7.24 22.37 0.16 2.74 16 24 F -0.14 -3.81 16.57 44.97 0.74 -3.07 16 25 N -0.30 -10.79 12.40 -48.60 -0.60 -11.40 16 26 N -0.13 -5.08 12.91 37.02 0.48 -4.60 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 29 H 0.02 0.81 7.55 -2.39 -0.02 0.79 16 30 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.13 3.67 8.07 -2.39 -0.02 3.65 16 32 H 0.23 3.84 7.88 -2.91 -0.02 3.82 16 33 H 0.36 2.50 7.02 -89.69 -0.63 1.87 16 34 H 0.37 2.40 9.06 -89.69 -0.81 1.58 16 35 H 0.17 0.91 6.29 -2.91 -0.02 0.90 16 36 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -71.38 339.73 3.28 -68.10 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -0.35 Total: 4.46 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.54 Total: -22.15 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -2.46 Total: -92.90 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.74 Total: -3.07 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -71.38 3.28 -68.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.673 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds