Wall clock time and date at job start Tue Mar 31 2020 14:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99734 * 2 1 4 4 H 1.48496 * 109.46788 * 274.21245 * 3 2 1 5 5 H 1.48502 * 109.47003 * 34.21252 * 3 2 1 6 6 H 1.48499 * 109.47077 * 154.21661 * 3 2 1 7 7 C 1.37872 * 120.00527 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 353.34071 * 7 2 1 9 9 C 1.50706 * 120.00431 * 173.34214 * 7 2 1 10 10 C 1.52994 * 115.54727 * 92.70181 * 9 7 2 11 11 S 1.81004 * 109.47412 * 39.82121 * 10 9 7 12 12 C 1.76205 * 100.00113 * 175.10768 * 11 10 9 13 13 N 1.31053 * 125.07771 * 0.02562 * 12 11 10 14 14 C 1.35868 * 109.62061 * 179.97438 * 13 12 11 15 15 C 1.39729 * 133.37926 * 180.02562 * 14 13 12 16 16 C 1.37691 * 119.77754 * 179.97438 * 15 14 13 17 17 C 1.38696 * 120.49886 * 0.02562 * 16 15 14 18 18 C 1.37974 * 120.43428 * 359.97438 * 17 16 15 19 19 C 1.38654 * 119.85213 * 0.02562 * 18 17 16 20 20 N 1.36634 * 125.07848 * 180.02562 * 12 11 10 21 21 C 1.46502 * 126.38176 * 0.06515 * 20 12 11 22 22 F 1.39899 * 109.46946 * 119.97560 * 21 20 12 23 23 F 1.39904 * 109.46914 * 239.97654 * 21 20 12 24 24 C 1.52991 * 117.51629 * 238.40512 * 9 7 2 25 25 C 1.52992 * 117.49555 * 307.03651 * 9 7 2 26 26 H 0.97002 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47262 * 279.82073 * 10 9 7 28 28 H 1.09002 * 109.47070 * 159.82128 * 10 9 7 29 29 H 1.08002 * 120.10827 * 359.97279 * 15 14 13 30 30 H 1.08002 * 119.74282 * 179.72068 * 16 15 14 31 31 H 1.07994 * 119.78520 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.07493 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46878 * 359.97438 * 21 20 12 34 34 H 1.09003 * 117.49876 * 214.96607 * 24 9 7 35 35 H 1.09000 * 117.50404 * 359.97438 * 24 9 7 36 36 H 1.09002 * 117.50265 * 359.96723 * 25 9 7 37 37 H 1.08997 * 117.49904 * 144.97764 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4074 2.0979 -1.3963 5 1 1.4938 2.6254 0.7872 6 1 3.5883 1.4162 0.6090 7 6 2.0046 -1.1939 0.0005 8 1 1.4701 -2.1261 0.1094 9 6 3.5040 -1.1984 -0.1508 10 6 4.2991 -1.1847 1.1563 11 16 3.4909 -2.2622 2.3655 12 6 4.6611 -2.1784 3.6802 13 7 5.7728 -1.4850 3.6559 14 6 6.4357 -1.6443 4.8312 15 6 7.6417 -1.1435 5.3284 16 6 8.0591 -1.4956 6.5924 17 6 7.2917 -2.3443 7.3762 18 6 6.0984 -2.8474 6.8999 19 6 5.6626 -2.5035 5.6294 20 7 4.5449 -2.8268 4.8773 21 6 3.4441 -3.7017 5.2885 22 9 3.9426 -4.9790 5.5663 23 9 2.8360 -3.1788 6.4348 24 6 4.0933 -1.9776 -1.3281 25 6 4.0956 -0.4477 -1.3454 26 1 -0.4851 0.8400 0.0004 27 1 4.3400 -0.1676 1.5461 28 1 5.3114 -1.5432 0.9695 29 1 8.2444 -0.4825 4.7232 30 1 8.9936 -1.1118 6.9744 31 1 7.6303 -2.6133 8.3658 32 1 5.5056 -3.5082 7.5150 33 1 2.7105 -3.7648 4.4847 34 1 5.0476 -2.4806 -1.1716 35 1 3.3966 -2.4877 -1.9934 36 1 3.4004 0.0489 -2.0223 37 1 5.0512 0.0561 -1.2002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594882844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:50 Heat of formation + Delta-G solvation = 7.339550 kcal Electronic energy + Delta-G solvation = -24580.735250 eV Core-core repulsion = 20700.939522 eV Total energy + Delta-G solvation = -3879.795728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.42728 -47.51773 -41.89928 -37.30448 -37.14022 -33.81542 -32.25470 -30.47090 -29.56282 -28.16167 -26.11581 -25.59888 -23.58900 -22.20473 -21.76669 -21.34371 -19.39153 -18.50209 -18.11053 -17.96140 -16.84758 -16.71280 -16.23910 -15.29699 -15.14730 -15.04952 -14.69354 -14.31163 -14.00373 -13.93121 -13.86104 -13.69777 -13.61435 -13.25080 -12.72770 -12.58118 -12.28545 -12.07773 -11.99940 -11.49233 -11.20975 -10.94584 -10.81020 -10.55011 -10.39596 -10.24348 -10.03752 -9.75432 -9.21524 -8.92961 -8.73879 -8.57085 -8.39254 -7.16249 -6.27478 -4.31987 0.81225 1.31847 1.36523 2.08446 2.56135 2.62443 3.21260 3.32572 3.36314 3.42645 3.79980 3.97544 4.18397 4.30346 4.48588 4.75889 4.81372 4.86764 5.01954 5.15824 5.31153 5.34047 5.55182 5.56417 5.77200 5.92646 5.99783 6.05264 6.25802 6.30171 6.37926 6.39801 6.42971 6.56531 6.59536 6.75825 6.82051 7.00771 7.54591 7.66591 8.28991 8.74300 9.35423 10.82975 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.004182 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.028231 B = 6694.316532 C = 7375.584347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.089 3.911 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.084 0.916 9 C 0.003 3.997 10 C -0.058 4.058 11 S 0.049 5.951 12 C 0.273 3.727 13 N -0.492 5.492 14 C 0.068 3.932 15 C -0.072 4.072 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.102 4.102 19 C 0.048 3.952 20 N -0.535 5.535 21 C 0.485 3.515 22 F -0.182 7.182 23 F -0.181 7.181 24 C -0.175 4.175 25 C -0.188 4.188 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.382 -5.572 11.339 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.180 1.180 7 C -0.534 4.534 8 H 0.102 0.898 9 C 0.001 3.999 10 C -0.207 4.207 11 S 0.285 5.715 12 C -0.097 4.097 13 N -0.216 5.216 14 C -0.050 4.050 15 C -0.093 4.093 16 C -0.143 4.143 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.058 4.058 20 N -0.240 5.240 21 C 0.349 3.651 22 F -0.163 7.163 23 F -0.162 7.162 24 C -0.212 4.212 25 C -0.228 4.228 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.346 -5.671 10.691 15.922 hybrid contribution 1.209 1.126 0.913 1.888 sum 11.555 -4.546 11.604 16.995 Atomic orbital electron populations 1.69883 1.06439 1.27532 1.48061 1.24946 0.94502 0.99043 0.93123 0.86915 0.80977 0.83418 0.78442 1.20287 1.21818 1.18036 1.20180 0.86382 0.94969 1.51837 0.89765 1.19111 0.95227 1.01536 0.84069 1.23541 0.99874 1.00637 0.96669 1.86383 1.19650 1.60663 1.04831 1.27081 0.99043 0.92684 0.90908 1.71144 1.04922 1.24001 1.21521 1.19153 0.96286 0.98593 0.90974 1.20280 0.93487 0.99909 0.95618 1.20888 1.00290 0.99265 0.93877 1.20832 0.93970 0.98223 0.99951 1.19966 0.97728 1.02291 0.92296 1.18964 0.89250 1.02092 0.95511 1.46445 1.19388 1.43129 1.15015 1.21315 0.84357 0.73149 0.86327 1.93106 1.88879 1.39485 1.94874 1.93115 1.82378 1.86604 1.54100 1.22944 1.00978 0.93240 1.04012 1.22985 1.01323 0.94824 1.03635 0.92229 0.89136 0.90193 0.85200 0.85276 0.85251 0.86150 0.81966 0.90645 0.89086 0.88962 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.96 55.43 0.77 -24.32 16 2 C 0.09 2.36 5.46 -17.82 -0.10 2.26 16 3 Si 0.87 20.53 24.98 -169.99 -4.25 16.29 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -5.75 5.46 56.52 0.31 -5.44 16 7 C -0.49 -12.46 8.14 -34.44 -0.28 -12.74 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.00 0.07 1.12 -155.67 -0.17 -0.11 16 10 C -0.06 -1.15 5.13 37.15 0.19 -0.96 16 11 S 0.05 0.91 20.05 -107.50 -2.16 -1.25 16 12 C 0.27 4.87 7.93 -88.44 -0.70 4.17 16 13 N -0.49 -9.21 10.56 -10.90 -0.12 -9.33 16 14 C 0.07 1.15 7.22 -84.68 -0.61 0.54 16 15 C -0.07 -0.98 10.10 -39.22 -0.40 -1.37 16 16 C -0.12 -1.33 10.01 -39.61 -0.40 -1.73 16 17 C -0.11 -1.18 10.03 -39.51 -0.40 -1.58 16 18 C -0.10 -1.33 10.04 -39.52 -0.40 -1.73 16 19 C 0.05 0.77 6.82 -83.84 -0.57 0.20 16 20 N -0.53 -8.60 3.09 -120.06 -0.37 -8.97 16 21 C 0.48 6.43 6.10 59.85 0.36 6.80 16 22 F -0.18 -2.36 17.50 2.25 0.04 -2.32 16 23 F -0.18 -2.45 17.50 2.25 0.04 -2.41 16 24 C -0.17 -3.27 9.88 -26.74 -0.26 -3.53 16 25 C -0.19 -3.72 7.53 -26.74 -0.20 -3.92 16 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.09 1.90 6.58 -51.92 -0.34 1.56 16 28 H 0.08 1.47 7.94 -51.92 -0.41 1.05 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.16 1.84 7.11 -51.93 -0.37 1.48 16 34 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -29.23 334.43 -9.02 -38.25 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.09 Total: 2.71 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.93 Total: -13.69 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.29 Total: -42.61 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.08 Total: -4.73 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.25 Total: 16.29 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.16 Total: -1.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.23 -9.02 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.593 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds