Wall clock time and date at job start Tue Mar 31 2020 14:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99734 * 2 1 4 4 H 1.48496 * 109.46788 * 274.21245 * 3 2 1 5 5 H 1.48502 * 109.47003 * 34.21252 * 3 2 1 6 6 H 1.48499 * 109.47077 * 154.21661 * 3 2 1 7 7 C 1.37872 * 120.00527 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 353.34071 * 7 2 1 9 9 C 1.50706 * 120.00431 * 173.34214 * 7 2 1 10 10 C 1.52994 * 115.54727 * 92.70181 * 9 7 2 11 11 S 1.81004 * 109.47412 * 39.82121 * 10 9 7 12 12 C 1.76205 * 100.00113 * 175.10768 * 11 10 9 13 13 N 1.31053 * 125.07771 * 0.02562 * 12 11 10 14 14 C 1.35868 * 109.62061 * 179.97438 * 13 12 11 15 15 C 1.39729 * 133.37926 * 180.02562 * 14 13 12 16 16 C 1.37691 * 119.77754 * 179.97438 * 15 14 13 17 17 C 1.38696 * 120.49886 * 0.02562 * 16 15 14 18 18 C 1.37974 * 120.43428 * 359.97438 * 17 16 15 19 19 C 1.38654 * 119.85213 * 0.02562 * 18 17 16 20 20 N 1.36634 * 125.07848 * 180.02562 * 12 11 10 21 21 C 1.46502 * 126.38176 * 0.06515 * 20 12 11 22 22 F 1.39899 * 109.46946 * 119.97560 * 21 20 12 23 23 F 1.39904 * 109.46914 * 239.97654 * 21 20 12 24 24 C 1.52991 * 117.51629 * 238.40512 * 9 7 2 25 25 C 1.52992 * 117.49555 * 307.03651 * 9 7 2 26 26 H 0.97002 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47262 * 279.82073 * 10 9 7 28 28 H 1.09002 * 109.47070 * 159.82128 * 10 9 7 29 29 H 1.08002 * 120.10827 * 359.97279 * 15 14 13 30 30 H 1.08002 * 119.74282 * 179.72068 * 16 15 14 31 31 H 1.07994 * 119.78520 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.07493 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46878 * 359.97438 * 21 20 12 34 34 H 1.09003 * 117.49876 * 214.96607 * 24 9 7 35 35 H 1.09000 * 117.50404 * 359.97438 * 24 9 7 36 36 H 1.09002 * 117.50265 * 359.96723 * 25 9 7 37 37 H 1.08997 * 117.49904 * 144.97764 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4074 2.0979 -1.3963 5 1 1.4938 2.6254 0.7872 6 1 3.5883 1.4162 0.6090 7 6 2.0046 -1.1939 0.0005 8 1 1.4701 -2.1261 0.1094 9 6 3.5040 -1.1984 -0.1508 10 6 4.2991 -1.1847 1.1563 11 16 3.4909 -2.2622 2.3655 12 6 4.6611 -2.1784 3.6802 13 7 5.7728 -1.4850 3.6559 14 6 6.4357 -1.6443 4.8312 15 6 7.6417 -1.1435 5.3284 16 6 8.0591 -1.4956 6.5924 17 6 7.2917 -2.3443 7.3762 18 6 6.0984 -2.8474 6.8999 19 6 5.6626 -2.5035 5.6294 20 7 4.5449 -2.8268 4.8773 21 6 3.4441 -3.7017 5.2885 22 9 3.9426 -4.9790 5.5663 23 9 2.8360 -3.1788 6.4348 24 6 4.0933 -1.9776 -1.3281 25 6 4.0956 -0.4477 -1.3454 26 1 -0.4851 0.8400 0.0004 27 1 4.3400 -0.1676 1.5461 28 1 5.3114 -1.5432 0.9695 29 1 8.2444 -0.4825 4.7232 30 1 8.9936 -1.1118 6.9744 31 1 7.6303 -2.6133 8.3658 32 1 5.5056 -3.5082 7.5150 33 1 2.7105 -3.7648 4.4847 34 1 5.0476 -2.4806 -1.1716 35 1 3.3966 -2.4877 -1.9934 36 1 3.4004 0.0489 -2.0223 37 1 5.0512 0.0561 -1.2002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:49 Heat of formation + Delta-G solvation = -7.582439 kcal Electronic energy + Delta-G solvation = -24581.382316 eV Core-core repulsion = 20700.939522 eV Total energy + Delta-G solvation = -3880.442794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.49971 -48.58773 -43.05060 -38.78791 -38.29817 -34.99068 -34.25085 -31.46849 -30.68278 -29.69405 -27.52250 -27.20539 -24.74009 -23.32596 -23.26874 -22.45407 -21.05971 -19.69121 -19.24925 -19.04725 -18.37260 -17.83459 -17.64868 -16.87959 -16.45618 -16.16042 -15.93437 -15.54005 -15.39050 -15.09430 -14.97610 -14.93370 -14.90324 -14.73341 -14.62290 -13.87245 -13.58102 -13.06033 -13.03299 -12.96601 -12.65679 -12.49793 -12.14463 -12.05773 -12.02882 -11.91447 -11.51871 -11.25036 -10.88737 -10.71415 -10.28696 -10.05622 -9.43624 -8.51561 -8.30936 -6.36992 -0.27457 -0.01986 0.36091 0.93182 1.18017 1.33898 1.39247 1.40708 1.50147 2.34318 2.35842 2.77441 2.94871 3.02949 3.07879 3.19041 3.41674 3.82432 3.93662 3.97589 4.19827 4.24748 4.27281 4.38579 4.39322 4.49361 4.66999 4.72188 4.86732 4.94028 5.02735 5.20439 5.27489 5.42059 5.45327 5.46485 5.48219 5.67540 5.81750 6.27189 6.45517 6.70806 7.33159 8.83360 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.004182 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.028231 B = 6694.316532 C = 7375.584347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.040 3.960 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.301 1.301 6 H -0.239 1.239 7 C -0.482 4.482 8 H 0.048 0.952 9 C -0.023 4.023 10 C -0.048 4.048 11 S 0.037 5.963 12 C 0.259 3.741 13 N -0.512 5.512 14 C 0.029 3.971 15 C -0.084 4.084 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.117 4.117 19 C 0.029 3.971 20 N -0.537 5.537 21 C 0.485 3.515 22 F -0.179 7.179 23 F -0.182 7.182 24 C -0.155 4.155 25 C -0.185 4.185 26 H 0.266 0.734 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.131 0.869 33 H 0.178 0.822 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.760 -5.599 13.063 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.229 1.229 6 H -0.162 1.162 7 C -0.521 4.521 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.197 4.197 11 S 0.271 5.729 12 C -0.112 4.112 13 N -0.236 5.236 14 C -0.089 4.089 15 C -0.104 4.104 16 C -0.129 4.129 17 C -0.110 4.110 18 C -0.139 4.139 19 C -0.077 4.077 20 N -0.242 5.242 21 C 0.350 3.650 22 F -0.160 7.160 23 F -0.163 7.163 24 C -0.192 4.192 25 C -0.224 4.224 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.158 0.842 30 H 0.188 0.812 31 H 0.188 0.812 32 H 0.149 0.851 33 H 0.194 0.806 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.750 -5.710 12.411 19.383 hybrid contribution 0.311 1.017 0.574 1.209 sum 14.061 -4.693 12.986 19.707 Atomic orbital electron populations 1.70006 1.08084 1.28060 1.51186 1.25610 0.94925 1.02065 0.93384 0.86154 0.80518 0.79794 0.78797 1.19252 1.22877 1.16197 1.20252 0.88641 0.93240 1.49989 0.93387 1.19020 0.93154 1.04675 0.85733 1.23323 1.00389 1.00135 0.95823 1.86281 1.20542 1.60761 1.05338 1.26600 0.99114 0.94134 0.91344 1.71018 1.05378 1.24206 1.22999 1.19621 0.97952 1.00461 0.90884 1.20644 0.92638 1.00140 0.96989 1.21390 1.01296 0.97839 0.92421 1.21396 0.92303 0.96065 1.01257 1.20318 0.99009 1.03068 0.91461 1.19402 0.89177 1.02538 0.96559 1.46539 1.20025 1.43107 1.14568 1.21496 0.84065 0.72846 0.86605 1.93106 1.88885 1.39176 1.94880 1.93108 1.82295 1.86676 1.54266 1.22983 1.01763 0.92931 1.01508 1.23033 1.01878 0.95654 1.01804 0.92455 0.90647 0.88650 0.84201 0.81239 0.81195 0.85068 0.80563 0.87648 0.89665 0.90246 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.96 21.44 0.30 -54.96 16 2 C 0.04 2.17 5.46 84.65 0.46 2.64 16 3 Si 0.92 42.58 24.98 68.60 1.71 44.30 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.24 -10.26 5.46 99.48 0.54 -9.71 16 7 C -0.48 -24.94 8.14 25.60 0.21 -24.73 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 9 C -0.02 -0.98 1.12 -52.93 -0.06 -1.04 16 10 C -0.05 -1.85 5.13 71.98 0.37 -1.48 16 11 S 0.04 1.37 20.05 -56.49 -1.13 0.23 16 12 C 0.26 9.29 7.93 179.59 1.42 10.72 16 13 N -0.51 -19.04 10.56 -188.40 -1.99 -21.03 16 14 C 0.03 0.93 7.22 39.42 0.28 1.22 16 15 C -0.08 -2.06 10.10 22.50 0.23 -1.84 16 16 C -0.11 -1.90 10.01 22.25 0.22 -1.68 16 17 C -0.09 -1.55 10.03 22.32 0.22 -1.33 16 18 C -0.12 -2.77 10.04 22.31 0.22 -2.55 16 19 C 0.03 0.91 6.82 38.72 0.26 1.17 16 20 N -0.54 -17.16 3.09 -533.77 -1.65 -18.80 16 21 C 0.49 12.76 6.10 127.77 0.78 13.54 16 22 F -0.18 -4.53 17.50 44.97 0.79 -3.74 16 23 F -0.18 -4.86 17.50 44.97 0.79 -4.08 16 24 C -0.15 -5.52 9.88 30.59 0.30 -5.22 16 25 C -0.18 -6.93 7.53 30.59 0.23 -6.70 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.07 3.12 6.58 -2.40 -0.02 3.10 16 28 H 0.10 3.36 7.94 -2.39 -0.02 3.34 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.18 4.07 7.11 -2.39 -0.02 4.05 16 34 H 0.11 3.15 8.08 -2.39 -0.02 3.13 16 35 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 3.20 7.00 -2.39 -0.02 3.18 16 37 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -65.76 334.43 4.92 -60.84 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.94 Total: 14.52 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 5.16 Total: -17.27 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.34 Total: -94.80 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 1.57 Total: -7.82 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.71 Total: 44.30 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.13 Total: 0.23 kcal Total: -65.76 4.92 -60.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.253 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds