Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47016 * 210.12625 * 3 2 1 5 5 N 1.46893 * 109.47209 * 174.87327 * 4 3 2 6 6 C 1.46900 * 111.00027 * 199.74901 * 5 4 3 7 7 C 1.50692 * 109.47287 * 66.04569 * 6 5 4 8 8 H 1.07995 * 119.99697 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99598 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99998 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47244 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46631 * 120.00105 * 11 9 7 14 14 H 1.48502 * 109.46967 * 240.00023 * 11 9 7 15 15 C 1.46909 * 111.00283 * 75.79375 * 5 4 3 16 16 C 1.52994 * 109.47159 * 199.64262 * 15 5 4 17 17 S 1.81401 * 109.47122 * 174.87076 * 16 15 5 18 18 C 1.76201 * 103.00204 * 180.02562 * 17 16 15 19 19 C 1.38998 * 120.07280 * 359.72450 * 18 17 16 20 20 C 1.38070 * 119.94536 * 179.72337 * 19 18 17 21 21 C 1.38299 * 120.09283 * 0.55417 * 20 19 18 22 22 C 1.38398 * 120.14456 * 359.71983 * 21 20 19 23 23 Cl 1.73602 * 119.97371 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.05618 * 0.02562 * 22 21 20 25 25 H 1.09003 * 109.47058 * 90.12177 * 3 2 1 26 26 H 1.09000 * 109.47106 * 330.12213 * 3 2 1 27 27 H 1.09000 * 109.47286 * 54.86813 * 4 3 2 28 28 H 1.09006 * 109.46663 * 294.87355 * 4 3 2 29 29 H 1.09008 * 109.47029 * 186.05101 * 6 5 4 30 30 H 1.09004 * 109.47186 * 306.04003 * 6 5 4 31 31 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47154 * 79.64066 * 15 5 4 33 33 H 1.09001 * 109.46786 * 319.64000 * 15 5 4 34 34 H 1.08996 * 109.47361 * 294.87072 * 16 15 5 35 35 H 1.08999 * 109.47394 * 54.87402 * 16 15 5 36 36 H 1.08005 * 120.02584 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.95067 * 180.25582 * 20 19 18 38 38 H 1.07998 * 119.92906 * 179.75076 * 21 20 19 39 39 H 1.08004 * 120.04179 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2486 0.7240 5 7 4.5811 1.1887 0.8320 6 6 5.0678 2.0828 1.8911 7 6 4.5889 1.5831 3.2297 8 1 3.9832 0.6910 3.2878 9 6 4.9232 2.2656 4.3802 10 7 5.6604 3.3524 4.3093 11 14 4.3289 1.6467 6.0394 12 1 3.5228 0.4142 5.8483 13 1 5.4987 1.3436 6.9025 14 1 3.4932 2.6898 6.6865 15 6 5.2173 1.5017 -0.4547 16 6 6.6519 0.9702 -0.4570 17 16 7.3871 1.2211 -2.0962 18 6 9.0090 0.5587 -1.9089 19 6 9.4075 0.0267 -0.6881 20 6 10.6771 -0.4969 -0.5459 21 6 11.5567 -0.4825 -1.6130 22 6 11.1659 0.0514 -2.8287 23 17 12.2734 0.0666 -4.1654 24 6 9.8945 0.5725 -2.9793 25 1 2.9713 0.0030 -1.0277 26 1 2.9717 -0.8903 0.5119 27 1 2.6809 1.2933 1.7218 28 1 2.8305 2.1373 0.1618 29 1 6.1577 2.1011 1.8788 30 1 4.6857 3.0894 1.7210 31 1 5.8959 3.8324 5.1187 32 1 5.2297 2.5818 -0.6007 33 1 4.6546 1.0324 -1.2618 34 1 7.2386 1.5047 0.2900 35 1 6.6455 -0.0939 -0.2208 36 1 8.7228 0.0186 0.1471 37 1 10.9853 -0.9140 0.4015 38 1 12.5505 -0.8891 -1.4977 39 1 9.5897 0.9886 -3.9282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595396216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = 40.007546 kcal Electronic energy + Delta-G solvation = -21198.391617 eV Core-core repulsion = 17871.809160 eV Total energy + Delta-G solvation = -3326.582457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.26456 -37.76674 -36.67167 -36.22036 -32.85893 -32.11085 -31.32282 -30.95796 -29.77139 -26.66722 -23.78035 -23.23463 -22.95691 -22.37938 -20.10585 -18.05468 -17.36715 -16.65251 -16.43852 -15.71151 -15.33966 -15.27961 -14.84040 -14.63255 -14.45136 -14.05779 -13.81683 -13.76625 -13.39036 -13.10919 -12.76839 -12.37840 -12.12302 -12.00817 -11.95990 -11.84609 -11.63706 -11.57782 -11.23306 -11.12481 -11.05093 -10.78922 -10.67353 -10.38882 -10.24269 -9.94915 -9.84290 -9.33829 -9.03116 -8.57961 -7.62114 -7.47543 -6.16326 -4.18638 0.87052 1.00024 1.35663 1.94745 2.39138 2.92391 2.96803 3.23157 3.32011 3.34840 3.35369 4.11755 4.33269 4.58629 4.78977 4.85326 4.91992 5.05431 5.13767 5.19083 5.23336 5.29552 5.29935 5.50310 5.53740 5.66341 5.76609 5.90076 5.92840 5.98859 6.03462 6.13550 6.21785 6.43261 6.47319 7.00016 7.13452 7.60654 7.73808 7.81533 7.95695 8.30544 8.88896 9.46880 10.94164 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002848 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.513983 B = 9830.786756 C =11728.239782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.218 3.782 3 C -0.027 4.027 4 C 0.066 3.934 5 N -0.531 5.531 6 C 0.192 3.808 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.067 3.933 16 C -0.096 4.096 17 S -0.114 6.114 18 C -0.064 4.064 19 C -0.126 4.126 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.018 4.018 23 Cl -0.072 7.072 24 C -0.097 4.097 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.033 0.967 29 H 0.034 0.966 30 H -0.005 1.005 31 H 0.262 0.738 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -6.889 -13.859 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.100 4.100 3 C -0.068 4.068 4 C -0.064 4.064 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.552 4.552 8 H 0.084 0.916 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.063 4.063 16 C -0.244 4.244 17 S 0.131 5.869 18 C -0.178 4.178 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.046 4.046 23 Cl -0.043 7.043 24 C -0.122 4.122 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.527 -6.674 -14.666 18.230 hybrid contribution 0.842 0.069 1.784 1.974 sum 9.369 -6.605 -12.882 17.244 Atomic orbital electron populations 1.81173 1.13266 1.09247 1.09520 1.29338 0.95416 0.92667 0.92553 1.19422 0.80587 1.03097 1.03676 1.21894 0.89484 0.93266 1.01763 1.62010 1.03699 1.55947 1.03915 1.19819 0.96054 0.89323 0.88054 1.21155 1.32787 1.10945 0.90285 0.91574 1.24971 0.95163 0.94878 0.99367 1.69953 1.37267 1.17431 1.28741 0.86485 0.78590 0.78879 0.83767 1.19576 1.20961 1.21088 1.21727 0.91915 0.98750 0.93870 1.23782 1.00089 1.06168 0.94387 1.85366 1.06028 1.75379 1.20103 1.21710 0.98188 1.01698 0.96207 1.21476 0.97672 0.99261 0.96633 1.21073 0.92842 0.97981 0.98594 1.21052 1.00767 1.01119 0.91470 1.20753 0.91390 1.02816 0.89681 1.98369 1.62385 1.97338 1.46219 1.20577 0.91408 1.01333 0.98902 0.88182 0.86518 0.88309 0.94844 0.94762 0.98676 0.92825 0.94073 0.90913 0.88600 0.88289 0.84437 0.84592 0.84888 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.50 18.54 42.15 0.78 -6.72 16 2 C 0.22 3.02 15.43 -20.76 -0.32 2.70 16 3 C -0.03 -0.31 5.75 -29.52 -0.17 -0.48 16 4 C 0.07 1.00 4.75 -3.83 -0.02 0.99 16 5 N -0.53 -8.95 4.36 -236.07 -1.03 -9.98 16 6 C 0.19 4.27 4.55 -4.98 -0.02 4.25 16 7 C -0.51 -12.79 8.23 -34.44 -0.28 -13.08 16 8 H 0.07 1.62 7.31 -52.49 -0.38 1.24 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 11 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.07 0.93 4.82 -3.82 -0.02 0.92 16 16 C -0.10 -1.25 4.37 37.15 0.16 -1.09 16 17 S -0.11 -1.37 21.92 -107.50 -2.36 -3.73 16 18 C -0.06 -0.77 6.11 -39.05 -0.24 -1.00 16 19 C -0.13 -1.44 9.36 -39.36 -0.37 -1.81 16 20 C -0.08 -0.83 10.04 -39.62 -0.40 -1.23 16 21 C -0.12 -1.17 9.83 -39.50 -0.39 -1.56 16 22 C -0.02 -0.19 6.32 -39.53 -0.25 -0.44 16 23 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 24 C -0.10 -1.08 9.57 -39.33 -0.38 -1.46 16 25 H 0.10 0.91 6.90 -51.93 -0.36 0.55 16 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.76 6.57 -51.93 -0.34 1.42 16 28 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 29 H 0.03 0.81 6.71 -51.92 -0.35 0.46 16 30 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 33 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 34 H 0.10 1.42 6.55 -51.93 -0.34 1.08 16 35 H 0.10 1.24 7.76 -51.92 -0.40 0.84 16 36 H 0.14 1.56 5.88 -52.48 -0.31 1.26 16 37 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -28.25 361.48 -10.63 -38.88 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.90 Total: -1.14 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.79 Total: -11.86 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.49 Total: -40.72 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.36 Total: -3.73 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.25 -10.63 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.887 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds