Wall clock time and date at job start Tue Mar 31 2020 14:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47016 * 210.12625 * 3 2 1 5 5 N 1.46893 * 109.47209 * 174.87327 * 4 3 2 6 6 C 1.46900 * 111.00027 * 199.74901 * 5 4 3 7 7 C 1.50692 * 109.47287 * 66.04569 * 6 5 4 8 8 H 1.07995 * 119.99697 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99598 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99998 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47244 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46631 * 120.00105 * 11 9 7 14 14 H 1.48502 * 109.46967 * 240.00023 * 11 9 7 15 15 C 1.46909 * 111.00283 * 75.79375 * 5 4 3 16 16 C 1.52994 * 109.47159 * 199.64262 * 15 5 4 17 17 S 1.81401 * 109.47122 * 174.87076 * 16 15 5 18 18 C 1.76201 * 103.00204 * 180.02562 * 17 16 15 19 19 C 1.38998 * 120.07280 * 359.72450 * 18 17 16 20 20 C 1.38070 * 119.94536 * 179.72337 * 19 18 17 21 21 C 1.38299 * 120.09283 * 0.55417 * 20 19 18 22 22 C 1.38398 * 120.14456 * 359.71983 * 21 20 19 23 23 Cl 1.73602 * 119.97371 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.05618 * 0.02562 * 22 21 20 25 25 H 1.09003 * 109.47058 * 90.12177 * 3 2 1 26 26 H 1.09000 * 109.47106 * 330.12213 * 3 2 1 27 27 H 1.09000 * 109.47286 * 54.86813 * 4 3 2 28 28 H 1.09006 * 109.46663 * 294.87355 * 4 3 2 29 29 H 1.09008 * 109.47029 * 186.05101 * 6 5 4 30 30 H 1.09004 * 109.47186 * 306.04003 * 6 5 4 31 31 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47154 * 79.64066 * 15 5 4 33 33 H 1.09001 * 109.46786 * 319.64000 * 15 5 4 34 34 H 1.08996 * 109.47361 * 294.87072 * 16 15 5 35 35 H 1.08999 * 109.47394 * 54.87402 * 16 15 5 36 36 H 1.08005 * 120.02584 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.95067 * 180.25582 * 20 19 18 38 38 H 1.07998 * 119.92906 * 179.75076 * 21 20 19 39 39 H 1.08004 * 120.04179 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2486 0.7240 5 7 4.5811 1.1887 0.8320 6 6 5.0678 2.0828 1.8911 7 6 4.5889 1.5831 3.2297 8 1 3.9832 0.6910 3.2878 9 6 4.9232 2.2656 4.3802 10 7 5.6604 3.3524 4.3093 11 14 4.3289 1.6467 6.0394 12 1 3.5228 0.4142 5.8483 13 1 5.4987 1.3436 6.9025 14 1 3.4932 2.6898 6.6865 15 6 5.2173 1.5017 -0.4547 16 6 6.6519 0.9702 -0.4570 17 16 7.3871 1.2211 -2.0962 18 6 9.0090 0.5587 -1.9089 19 6 9.4075 0.0267 -0.6881 20 6 10.6771 -0.4969 -0.5459 21 6 11.5567 -0.4825 -1.6130 22 6 11.1659 0.0514 -2.8287 23 17 12.2734 0.0666 -4.1654 24 6 9.8945 0.5725 -2.9793 25 1 2.9713 0.0030 -1.0277 26 1 2.9717 -0.8903 0.5119 27 1 2.6809 1.2933 1.7218 28 1 2.8305 2.1373 0.1618 29 1 6.1577 2.1011 1.8788 30 1 4.6857 3.0894 1.7210 31 1 5.8959 3.8324 5.1187 32 1 5.2297 2.5818 -0.6007 33 1 4.6546 1.0324 -1.2618 34 1 7.2386 1.5047 0.2900 35 1 6.6455 -0.0939 -0.2208 36 1 8.7228 0.0186 0.1471 37 1 10.9853 -0.9140 0.4015 38 1 12.5505 -0.8891 -1.4977 39 1 9.5897 0.9886 -3.9282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595396216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:41 Heat of formation + Delta-G solvation = 26.417985 kcal Electronic energy + Delta-G solvation = -21198.980904 eV Core-core repulsion = 17871.809160 eV Total energy + Delta-G solvation = -3327.171745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06731 -39.09260 -37.46158 -37.43179 -34.77223 -33.21333 -32.12813 -31.87634 -31.12778 -28.32132 -24.86506 -24.80745 -23.84475 -23.36466 -21.47779 -18.90977 -18.65305 -18.31620 -17.38880 -16.73846 -16.60232 -16.36449 -16.16024 -15.84884 -15.60827 -15.16310 -14.81809 -14.70446 -14.51337 -14.36821 -14.03832 -13.91975 -13.51286 -13.26032 -13.00032 -12.84346 -12.75295 -12.68250 -12.57471 -12.40178 -12.30962 -12.20921 -11.91527 -11.82679 -11.52183 -11.18461 -11.10721 -10.71579 -10.56624 -9.84306 -9.07969 -8.40786 -8.16459 -6.23787 0.04323 0.18803 0.41566 1.14230 1.41668 1.42589 1.45927 1.56250 1.79082 1.87108 2.43145 2.53464 2.98337 3.18617 3.61334 3.81837 3.92220 4.03627 4.07657 4.10339 4.19103 4.36491 4.40339 4.49064 4.57661 4.74104 4.77617 4.78798 4.91612 5.07392 5.09408 5.13701 5.19755 5.33604 5.34250 5.35047 5.69105 5.71212 6.09635 6.28514 6.58155 6.66781 6.93401 7.45705 8.94352 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.002848 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.513983 B = 9830.786756 C =11728.239782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.242 3.758 3 C -0.012 4.012 4 C 0.065 3.935 5 N -0.526 5.526 6 C 0.207 3.793 7 C -0.515 4.515 8 H 0.070 0.930 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.955 3.045 12 H -0.262 1.262 13 H -0.281 1.281 14 H -0.287 1.287 15 C 0.068 3.932 16 C -0.089 4.089 17 S -0.106 6.106 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.025 4.025 23 Cl -0.064 7.064 24 C -0.104 4.104 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.016 0.984 30 H -0.037 1.037 31 H 0.261 0.739 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 -8.650 -14.745 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.075 4.075 3 C -0.052 4.052 4 C -0.065 4.065 5 N -0.250 5.250 6 C 0.081 3.919 7 C -0.553 4.553 8 H 0.088 0.912 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.186 1.186 13 H -0.207 1.207 14 H -0.214 1.214 15 C -0.061 4.061 16 C -0.238 4.238 17 S 0.138 5.862 18 C -0.194 4.194 19 C -0.163 4.163 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.053 4.053 23 Cl -0.035 7.035 24 C -0.129 4.129 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.034 0.966 30 H -0.019 1.019 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.163 -8.457 -15.570 19.947 hybrid contribution 0.740 0.620 1.977 2.200 sum 9.903 -7.837 -13.593 18.554 Atomic orbital electron populations 1.81204 1.14820 1.10748 1.11293 1.29631 0.95590 0.91233 0.91017 1.19420 0.78839 1.01478 1.05422 1.21849 0.88241 0.95578 1.00844 1.61891 1.04810 1.54054 1.04281 1.19429 0.94740 0.88564 0.89151 1.21531 1.31793 1.10576 0.91435 0.91207 1.25760 0.95541 0.95143 1.02860 1.70072 1.38964 1.18850 1.29467 0.85538 0.78070 0.78461 0.79802 1.18552 1.20716 1.21375 1.21815 0.92738 0.98493 0.93046 1.23606 0.99262 1.06135 0.94804 1.85227 1.06594 1.75865 1.18508 1.21779 0.98179 1.02644 0.96824 1.21565 0.98493 0.99897 0.96382 1.21352 0.92161 0.97347 0.99669 1.21353 1.01639 1.00143 0.90868 1.20889 0.91359 1.02756 0.90336 1.98373 1.61957 1.97296 1.45879 1.20686 0.91711 1.01525 0.98970 0.84497 0.84861 0.91268 0.94525 0.96641 1.01911 0.92964 0.95308 0.87433 0.91042 0.87497 0.84994 0.82441 0.82642 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.05 18.54 20.01 0.37 -15.68 16 2 C 0.24 6.23 15.43 89.44 1.38 7.61 16 3 C -0.01 -0.23 5.75 28.79 0.17 -0.06 16 4 C 0.06 1.90 4.75 86.31 0.41 2.31 16 5 N -0.53 -17.38 4.36 -900.78 -3.92 -21.30 16 6 C 0.21 9.46 4.55 85.55 0.39 9.85 16 7 C -0.51 -25.93 8.23 25.60 0.21 -25.72 16 8 H 0.07 3.40 7.31 -2.91 -0.02 3.38 16 9 C 0.01 0.27 5.46 84.66 0.46 0.74 16 10 N -0.93 -52.90 13.29 21.45 0.28 -52.62 16 11 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 15 C 0.07 1.82 4.82 86.30 0.42 2.23 16 16 C -0.09 -2.29 4.37 71.98 0.31 -1.97 16 17 S -0.11 -2.47 21.92 -56.49 -1.24 -3.71 16 18 C -0.08 -1.86 6.11 22.62 0.14 -1.72 16 19 C -0.14 -3.07 9.36 22.41 0.21 -2.86 16 20 C -0.09 -1.54 10.04 22.24 0.22 -1.31 16 21 C -0.12 -2.02 9.83 22.32 0.22 -1.80 16 22 C -0.03 -0.48 6.32 22.30 0.14 -0.34 16 23 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 16 24 C -0.10 -2.20 9.57 22.43 0.21 -1.98 16 25 H 0.14 1.84 6.90 -2.39 -0.02 1.82 16 26 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 2.45 6.57 -2.39 -0.02 2.44 16 28 H 0.04 1.05 8.00 -2.38 -0.02 1.03 16 29 H 0.02 0.77 6.71 -2.38 -0.02 0.75 16 30 H -0.04 -1.90 8.12 -2.39 -0.02 -1.92 16 31 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.03 0.85 8.00 -2.39 -0.02 0.83 16 33 H 0.11 2.13 6.56 -2.39 -0.02 2.11 16 34 H 0.07 2.18 6.55 -2.39 -0.02 2.16 16 35 H 0.11 2.55 7.76 -2.39 -0.02 2.53 16 36 H 0.13 2.99 5.88 -2.91 -0.02 2.97 16 37 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.19 361.48 3.40 -58.79 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.07 Total: 6.80 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.89 Total: -15.04 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.27 Total: -89.60 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.24 Total: -3.71 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -62.19 3.40 -58.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.207 kcal (2) G-P(sol) polarization free energy of solvation -62.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds