Wall clock time and date at job start Tue Mar 31 2020 13:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36569 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00226 * 180.02562 * 5 4 3 7 7 O 1.21291 * 119.99933 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.53888 * 113.58816 * 279.21673 * 8 6 5 10 10 C 1.53428 * 86.82181 * 220.45618 * 9 8 6 11 11 C 1.52468 * 128.60520 * 165.09755 * 10 9 8 12 12 C 1.52458 * 128.51861 * 245.01167 * 10 9 8 13 13 C 1.53252 * 87.72391 * 25.01674 * 10 9 8 14 14 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 15 15 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 16 16 S 1.76195 * 125.92750 * 359.69587 * 15 2 1 17 17 C 1.76202 * 100.00134 * 179.97438 * 16 15 2 18 18 H 1.08004 * 119.99366 * 359.97438 * 17 16 15 19 19 C 1.38426 * 120.00258 * 179.97438 * 17 16 15 20 20 N 1.31809 * 119.99831 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00252 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47280 * 89.99102 * 21 19 17 23 23 H 1.48499 * 109.47410 * 209.99760 * 21 19 17 24 24 H 1.48503 * 109.46799 * 329.99887 * 21 19 17 25 25 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 26 26 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 27 27 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 28 28 H 0.96999 * 120.00026 * 0.02562 * 5 4 3 29 29 H 1.09001 * 112.83017 * 50.33188 * 8 6 5 30 30 H 1.08999 * 113.64267 * 334.92140 * 9 8 6 31 31 H 1.08995 * 113.64825 * 105.93439 * 9 8 6 32 32 H 1.08995 * 117.51380 * 224.95533 * 11 10 9 33 33 H 1.09004 * 117.51048 * 10.05883 * 11 10 9 34 34 H 1.09003 * 117.51344 * 349.80134 * 12 10 9 35 35 H 1.08999 * 117.51550 * 134.86444 * 12 10 9 36 36 H 1.09003 * 113.64354 * 220.49022 * 13 10 9 37 37 H 1.09002 * 113.73200 * 89.49226 * 13 10 9 38 38 H 0.97006 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0058 6 6 5.7297 1.8102 -0.0123 7 8 6.1354 0.6672 -0.0172 8 6 6.7074 2.9568 -0.0122 9 6 6.9293 3.5771 -1.4029 10 6 8.4149 3.6694 -1.0306 11 6 9.6108 3.9161 -1.9436 12 6 9.2692 4.9171 -0.8364 13 6 8.1797 2.5108 -0.0555 14 16 3.9345 -0.7098 -0.0121 15 6 2.2251 -1.1390 -0.0057 16 16 1.5697 -2.7745 -0.0063 17 6 3.0665 -3.7041 -0.0158 18 1 4.0187 -3.1943 -0.0197 19 6 3.0221 -5.0876 -0.0182 20 7 4.1419 -5.7829 -0.0258 21 14 1.3753 -5.9693 -0.0122 22 1 0.9323 -6.2001 -1.4106 23 1 1.5145 -7.2733 0.6846 24 1 0.3700 -5.1353 0.6942 25 1 -0.3634 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3634 -0.8874 -0.5182 28 1 4.0798 2.9688 -0.0015 29 1 6.4971 3.6919 0.7647 30 1 6.7266 2.8907 -2.2250 31 1 6.4487 4.5470 -1.5308 32 1 10.4908 3.2888 -1.8012 33 1 9.4063 4.2135 -2.9721 34 1 8.8401 5.8730 -1.1368 35 1 9.9240 4.9485 0.0345 36 1 8.6999 2.6271 0.8952 37 1 8.3253 1.5264 -0.5006 38 1 4.1108 -6.7524 -0.0279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597047272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:05 Heat of formation + Delta-G solvation = 48.652546 kcal Electronic energy + Delta-G solvation = -21702.347712 eV Core-core repulsion = 18378.183836 eV Total energy + Delta-G solvation = -3324.163875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80289 -39.10768 -38.34179 -34.76738 -33.91750 -32.74799 -30.61502 -27.20183 -26.10476 -25.90932 -25.77999 -22.91909 -22.64650 -20.98918 -19.61244 -18.67471 -18.06388 -17.68821 -16.81340 -15.90178 -15.87408 -15.46265 -15.31804 -15.10287 -14.90606 -14.07082 -13.94015 -13.22059 -13.01473 -12.77514 -12.71359 -12.39421 -12.18160 -12.01696 -11.80726 -11.80087 -11.56853 -11.32688 -11.31044 -10.87681 -10.63302 -10.60226 -10.51356 -10.13071 -10.00920 -9.78067 -9.45387 -9.15113 -8.84552 -8.76460 -7.87961 -6.71939 -6.54846 -4.28079 1.32023 1.81051 2.43241 2.47185 2.77672 2.92032 3.10753 3.20491 3.37650 3.44767 3.53805 4.00219 4.03662 4.20662 4.29441 4.48588 4.49477 4.55877 4.85002 4.87489 4.98587 5.15055 5.31492 5.33626 5.44477 5.50466 5.54961 5.70978 5.82311 5.86475 5.89625 6.01631 6.09679 6.12764 6.35277 6.41868 6.88968 7.15278 7.68046 7.98406 8.24723 8.43740 8.84885 10.53042 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003143 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.908560 B = 8907.323606 C =10156.661158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.482 5.482 4 C 0.193 3.807 5 N -0.615 5.615 6 C 0.514 3.486 7 O -0.500 6.500 8 C -0.123 4.123 9 C -0.083 4.083 10 C -0.164 4.164 11 C -0.164 4.164 12 C -0.151 4.151 13 C -0.075 4.075 14 S 0.231 5.769 15 C -0.240 4.240 16 S 0.053 5.947 17 C -0.544 4.544 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.857 5.857 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.415 0.585 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 19.570 -1.174 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.204 5.204 4 C -0.177 4.177 5 N -0.264 5.264 6 C 0.299 3.701 7 O -0.373 6.373 8 C -0.144 4.144 9 C -0.120 4.120 10 C -0.164 4.164 11 C -0.201 4.201 12 C -0.188 4.188 13 C -0.112 4.112 14 S 0.476 5.524 15 C -0.476 4.476 16 S 0.300 5.700 17 C -0.693 4.693 18 H 0.122 0.878 19 C -0.110 4.110 20 N -0.491 5.491 21 Si 0.676 3.324 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.252 0.748 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.808 17.959 -1.173 18.628 hybrid contribution -0.296 0.440 0.037 0.532 sum 4.512 18.399 -1.136 18.978 Atomic orbital electron populations 1.20145 0.88026 1.02185 1.01910 1.19109 0.96775 0.84625 1.10559 1.65878 1.02912 1.32150 1.19471 1.24039 0.90047 0.93562 1.10090 1.42518 1.04515 1.07983 1.71386 1.20810 0.81628 0.91399 0.76255 1.90720 1.76966 1.22446 1.47184 1.22570 0.94789 0.96288 1.00779 1.22482 0.93317 1.01140 0.95088 1.22147 0.92705 0.99114 1.02425 1.22810 0.98696 1.02741 0.95835 1.22803 1.01938 0.93148 1.00900 1.22419 0.91962 0.98001 0.98846 1.86185 1.00578 0.94440 1.71176 1.28161 1.01739 1.04462 1.13232 1.82452 1.13493 0.89198 1.84861 1.22658 0.92389 0.94478 1.59740 0.87778 1.24740 0.97370 0.96232 0.92634 1.70012 1.26456 1.07662 1.44965 0.86813 0.83897 0.81361 0.80366 1.18573 1.18989 1.15978 0.91718 0.91728 0.91105 0.74795 0.86236 0.88915 0.90279 0.88496 0.88614 0.88573 0.88502 0.90581 0.87825 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.00 0.36 -0.69 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.07 16 3 N -0.48 -9.46 10.55 -9.78 -0.10 -9.56 16 4 C 0.19 3.66 8.40 -87.20 -0.73 2.93 16 5 N -0.62 -8.76 5.40 -11.78 -0.06 -8.82 16 6 C 0.51 7.18 7.31 -10.99 -0.08 7.10 16 7 O -0.50 -9.17 13.42 5.55 0.07 -9.10 16 8 C -0.12 -1.15 4.14 -90.85 -0.38 -1.53 16 9 C -0.08 -0.68 7.66 -26.05 -0.20 -0.88 16 10 C -0.16 -1.33 3.09 -154.71 -0.48 -1.81 16 11 C -0.16 -1.20 10.53 -26.94 -0.28 -1.49 16 12 C -0.15 -0.99 10.53 -26.94 -0.28 -1.27 16 13 C -0.07 -0.73 7.42 -26.14 -0.19 -0.92 16 14 S 0.23 5.16 18.35 -107.50 -1.97 3.18 16 15 C -0.24 -5.46 6.67 29.46 0.20 -5.27 16 16 S 0.05 1.27 18.71 -107.50 -2.01 -0.74 16 17 C -0.54 -15.23 9.80 30.80 0.30 -14.93 16 18 H 0.10 3.13 6.21 -52.48 -0.33 2.80 16 19 C 0.10 2.82 5.49 -17.49 -0.10 2.73 16 20 N -0.86 -24.86 13.98 55.47 0.78 -24.08 16 21 Si 0.85 19.75 27.73 -169.99 -4.71 15.04 16 22 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.24 -5.23 6.73 56.52 0.38 -4.85 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 28 H 0.41 4.40 8.82 -40.82 -0.36 4.04 16 29 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.22 7.44 -51.93 -0.39 0.84 16 38 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -32.17 346.42 -10.06 -42.23 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.84 Total: 2.58 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.43 Total: -15.94 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.61 Total: -42.47 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -3.98 Total: 2.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.17 -10.06 -42.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597047272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.887 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds