Wall clock time and date at job start Tue Mar 31 2020 13:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36569 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00226 * 180.02562 * 5 4 3 7 7 O 1.21291 * 119.99933 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.53888 * 113.58816 * 279.21673 * 8 6 5 10 10 C 1.53428 * 86.82181 * 220.45618 * 9 8 6 11 11 C 1.52468 * 128.60520 * 165.09755 * 10 9 8 12 12 C 1.52458 * 128.51861 * 245.01167 * 10 9 8 13 13 C 1.53252 * 87.72391 * 25.01674 * 10 9 8 14 14 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 15 15 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 16 16 S 1.76195 * 125.92750 * 359.69587 * 15 2 1 17 17 C 1.76202 * 100.00134 * 179.97438 * 16 15 2 18 18 H 1.08004 * 119.99366 * 359.97438 * 17 16 15 19 19 C 1.38426 * 120.00258 * 179.97438 * 17 16 15 20 20 N 1.31809 * 119.99831 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00252 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47280 * 89.99102 * 21 19 17 23 23 H 1.48499 * 109.47410 * 209.99760 * 21 19 17 24 24 H 1.48503 * 109.46799 * 329.99887 * 21 19 17 25 25 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 26 26 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 27 27 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 28 28 H 0.96999 * 120.00026 * 0.02562 * 5 4 3 29 29 H 1.09001 * 112.83017 * 50.33188 * 8 6 5 30 30 H 1.08999 * 113.64267 * 334.92140 * 9 8 6 31 31 H 1.08995 * 113.64825 * 105.93439 * 9 8 6 32 32 H 1.08995 * 117.51380 * 224.95533 * 11 10 9 33 33 H 1.09004 * 117.51048 * 10.05883 * 11 10 9 34 34 H 1.09003 * 117.51344 * 349.80134 * 12 10 9 35 35 H 1.08999 * 117.51550 * 134.86444 * 12 10 9 36 36 H 1.09003 * 113.64354 * 220.49022 * 13 10 9 37 37 H 1.09002 * 113.73200 * 89.49226 * 13 10 9 38 38 H 0.97006 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0058 6 6 5.7297 1.8102 -0.0123 7 8 6.1354 0.6672 -0.0172 8 6 6.7074 2.9568 -0.0122 9 6 6.9293 3.5771 -1.4029 10 6 8.4149 3.6694 -1.0306 11 6 9.6108 3.9161 -1.9436 12 6 9.2692 4.9171 -0.8364 13 6 8.1797 2.5108 -0.0555 14 16 3.9345 -0.7098 -0.0121 15 6 2.2251 -1.1390 -0.0057 16 16 1.5697 -2.7745 -0.0063 17 6 3.0665 -3.7041 -0.0158 18 1 4.0187 -3.1943 -0.0197 19 6 3.0221 -5.0876 -0.0182 20 7 4.1419 -5.7829 -0.0258 21 14 1.3753 -5.9693 -0.0122 22 1 0.9323 -6.2001 -1.4106 23 1 1.5145 -7.2733 0.6846 24 1 0.3700 -5.1353 0.6942 25 1 -0.3634 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3634 -0.8874 -0.5182 28 1 4.0798 2.9688 -0.0015 29 1 6.4971 3.6919 0.7647 30 1 6.7266 2.8907 -2.2250 31 1 6.4487 4.5470 -1.5308 32 1 10.4908 3.2888 -1.8012 33 1 9.4063 4.2135 -2.9721 34 1 8.8401 5.8730 -1.1368 35 1 9.9240 4.9485 0.0345 36 1 8.6999 2.6271 0.8952 37 1 8.3253 1.5264 -0.5006 38 1 4.1108 -6.7524 -0.0279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597047272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:05 Heat of formation + Delta-G solvation = 28.773410 kcal Electronic energy + Delta-G solvation = -21703.209736 eV Core-core repulsion = 18378.183836 eV Total energy + Delta-G solvation = -3325.025900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88305 -40.45353 -39.50935 -36.17114 -34.83128 -34.62012 -32.09238 -28.82542 -27.91989 -27.03406 -26.74161 -24.12918 -23.28246 -22.38782 -21.10488 -19.74129 -19.37658 -19.16899 -18.17527 -17.47716 -17.23308 -16.94922 -16.37671 -16.10103 -16.05042 -15.59733 -15.31361 -15.00910 -14.50402 -13.87043 -13.61471 -13.49994 -13.42914 -13.38006 -13.17159 -13.13178 -13.09487 -12.59171 -12.33532 -12.29433 -12.15146 -11.93747 -11.48446 -11.30845 -11.29401 -11.10361 -10.81846 -10.60650 -10.57849 -10.54300 -9.63026 -8.62440 -8.53860 -6.35538 -0.29948 0.14814 0.75675 1.05023 1.16776 1.28336 1.38997 1.52313 1.66655 1.96757 2.13474 2.50088 2.76342 2.82756 3.28559 3.40643 3.55772 3.63601 3.85300 3.90103 4.12555 4.35233 4.36421 4.66546 4.73192 4.77521 4.81310 4.83950 4.84264 4.92835 5.00335 5.03249 5.05151 5.21073 5.30276 5.31853 5.43908 5.59967 5.94677 6.06840 6.75423 6.76010 6.83553 8.50350 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003143 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.908560 B = 8907.323606 C =10156.661158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.485 5.485 4 C 0.233 3.767 5 N -0.601 5.601 6 C 0.513 3.487 7 O -0.543 6.543 8 C -0.110 4.110 9 C -0.076 4.076 10 C -0.172 4.172 11 C -0.174 4.174 12 C -0.131 4.131 13 C -0.085 4.085 14 S 0.159 5.841 15 C -0.278 4.278 16 S 0.060 5.940 17 C -0.567 4.567 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.908 5.908 21 Si 0.915 3.085 22 H -0.252 1.252 23 H -0.254 1.254 24 H -0.219 1.219 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.438 0.562 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 23.198 -0.992 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.208 5.208 4 C -0.139 4.139 5 N -0.253 5.253 6 C 0.301 3.699 7 O -0.419 6.419 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.172 4.172 11 C -0.211 4.211 12 C -0.167 4.167 13 C -0.123 4.123 14 S 0.405 5.595 15 C -0.512 4.512 16 S 0.305 5.695 17 C -0.715 4.715 18 H 0.084 0.916 19 C -0.159 4.159 20 N -0.544 5.544 21 Si 0.734 3.266 22 H -0.176 1.176 23 H -0.178 1.178 24 H -0.142 1.142 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.280 0.720 29 H 0.176 0.824 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.246 21.664 -0.992 21.928 hybrid contribution 0.400 -0.337 -0.034 0.524 sum 3.645 21.328 -1.026 21.661 Atomic orbital electron populations 1.20323 0.85054 1.03564 1.03498 1.19857 0.98690 0.83929 1.06353 1.66110 1.02518 1.31172 1.20951 1.24327 0.90421 0.93277 1.05902 1.42711 1.04036 1.07901 1.70606 1.21914 0.81737 0.92103 0.74164 1.90731 1.77489 1.24929 1.48703 1.22767 0.92497 0.94834 1.02960 1.22460 0.93635 1.01919 0.93366 1.22078 0.92989 0.99589 1.02533 1.22907 0.98193 1.03466 0.96559 1.22916 1.00555 0.92900 1.00376 1.22402 0.92717 0.97401 0.99757 1.86573 1.02238 0.98025 1.72683 1.28101 1.01496 1.04535 1.17107 1.81865 1.10775 0.89428 1.87409 1.22839 0.93241 0.95452 1.59989 0.91562 1.25739 1.01417 0.96854 0.91891 1.70121 1.29108 1.08259 1.46883 0.85885 0.79193 0.80479 0.81063 1.17644 1.17754 1.14200 0.89846 0.89245 0.90819 0.72039 0.82440 0.90750 0.87264 0.88906 0.88034 0.86800 0.87752 0.89669 0.91019 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.02 71.23 0.71 -1.27 16 2 C 0.05 2.09 6.73 41.77 0.28 2.37 16 3 N -0.49 -18.02 10.55 -184.87 -1.95 -19.97 16 4 C 0.23 8.62 8.40 179.15 1.50 10.12 16 5 N -0.60 -15.89 5.40 -309.57 -1.67 -17.57 16 6 C 0.51 13.87 7.31 87.65 0.64 14.52 16 7 O -0.54 -20.64 13.42 -3.07 -0.04 -20.68 16 8 C -0.11 -1.79 4.14 -10.94 -0.05 -1.83 16 9 C -0.08 -1.04 7.66 31.04 0.24 -0.81 16 10 C -0.17 -2.40 3.09 -52.31 -0.16 -2.57 16 11 C -0.17 -2.25 10.53 30.46 0.32 -1.93 16 12 C -0.13 -1.26 10.53 30.46 0.32 -0.94 16 13 C -0.09 -1.58 7.42 30.98 0.23 -1.35 16 14 S 0.16 7.41 18.35 -56.49 -1.04 6.37 16 15 C -0.28 -12.81 6.67 67.00 0.45 -12.36 16 16 S 0.06 2.94 18.71 -56.49 -1.06 1.88 16 17 C -0.57 -33.36 9.80 67.86 0.67 -32.70 16 18 H 0.07 4.30 6.21 -2.91 -0.02 4.28 16 19 C 0.05 2.75 5.49 84.74 0.47 3.21 16 20 N -0.91 -55.26 13.98 21.59 0.30 -54.96 16 21 Si 0.91 41.22 27.73 68.60 1.90 43.12 16 22 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.22 -9.17 6.73 99.48 0.67 -8.50 16 25 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.24 7.38 -2.39 -0.02 2.22 16 28 H 0.44 7.70 8.82 -92.71 -0.82 6.88 16 29 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.80 7.44 -2.39 -0.02 1.78 16 38 H 0.28 15.64 8.32 -92.70 -0.77 14.86 16 Total: -1.00 -74.95 346.42 2.31 -72.63 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.25 Total: 14.72 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 5.62 Total: -25.54 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -3.32 Total: -92.50 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.04 Total: -20.68 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.90 Total: 43.12 kcal Atomic # 16 Polarization: 10.34 SS G_CDS: -2.09 Total: 8.25 kcal Total: -74.95 2.31 -72.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597047272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.406 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds