Wall clock time and date at job start Tue Mar 31 2020 13:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46623 * 2 1 4 4 H 1.08991 * 110.52444 * 52.20223 * 3 2 1 5 5 C 1.51624 * 110.90561 * 289.42684 * 3 2 1 6 6 O 1.21312 * 127.32540 * 61.55168 * 5 3 2 7 7 N 1.34872 * 105.34176 * 241.67231 * 5 3 2 8 8 C 1.46500 * 124.36345 * 179.87619 * 7 5 3 9 9 C 1.50696 * 109.46944 * 89.72595 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47364 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.46883 * 120.00040 * 13 11 9 16 16 H 1.48497 * 109.46870 * 239.99850 * 13 11 9 17 17 N 1.39158 * 111.26810 * 359.61295 * 7 5 3 18 18 C 1.29409 * 112.78124 * 0.26287 * 17 7 5 19 19 C 1.47432 * 126.53147 * 179.97438 * 18 17 7 20 20 C 1.39716 * 120.14174 * 180.02562 * 19 18 17 21 21 C 1.37851 * 119.88313 * 179.97438 * 20 19 18 22 22 C 1.38646 * 120.15787 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.85850 * 179.97438 * 22 21 20 24 24 C 1.38550 * 120.28080 * 359.97438 * 22 21 20 25 25 C 1.38036 * 120.11312 * 359.71870 * 24 22 21 26 26 Cl 1.73603 * 120.07817 * 180.27811 * 25 24 22 27 27 H 1.09002 * 109.47493 * 60.00413 * 1 2 3 28 28 H 1.09010 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47284 * 300.00013 * 1 2 3 30 30 H 1.08997 * 109.47284 * 239.99987 * 2 1 3 31 31 H 1.08998 * 109.47029 * 119.99617 * 2 1 3 32 32 H 1.09000 * 109.46609 * 329.72777 * 8 7 5 33 33 H 1.08999 * 109.46486 * 209.72856 * 8 7 5 34 34 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 35 35 H 1.07999 * 120.05827 * 0.02562 * 20 19 18 36 36 H 1.07999 * 119.92112 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.94158 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5774 2.0113 0.8066 5 6 1.7760 2.1097 -1.3358 6 8 0.6993 2.3133 -1.8563 7 7 2.9931 2.4261 -1.8233 8 6 3.2218 3.0916 -3.1082 9 6 3.2220 4.5851 -2.9072 10 1 3.0669 4.9974 -1.9211 11 6 3.4193 5.4254 -3.9825 12 7 3.6017 4.9234 -5.1843 13 14 3.4188 7.2767 -3.7335 14 1 3.1867 7.5833 -2.2992 15 1 4.7303 7.8329 -4.1532 16 1 2.3386 7.8857 -4.5505 17 7 4.0033 2.0441 -0.9457 18 6 3.5490 1.4738 0.1235 19 6 4.3484 0.9532 1.2476 20 6 3.7157 0.3585 2.3422 21 6 4.4683 -0.1270 3.3901 22 6 5.8508 -0.0259 3.3603 23 9 6.5824 -0.5033 4.3909 24 6 6.4851 0.5626 2.2783 25 6 5.7429 1.0468 1.2199 26 17 6.5391 1.7776 -0.1388 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.4290 2.8188 -3.8047 33 1 4.1845 2.7792 -3.5128 34 1 3.6017 3.9621 -5.3137 35 1 2.6389 0.2785 2.3669 36 1 3.9799 -0.5865 4.2367 37 1 7.5622 0.6381 2.2606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:48 Heat of formation + Delta-G solvation = -13.530444 kcal Electronic energy + Delta-G solvation = -24704.924487 eV Core-core repulsion = 20809.807273 eV Total energy + Delta-G solvation = -3895.117215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.25707 -41.05699 -39.23589 -36.83691 -36.43827 -34.93103 -33.41081 -32.14096 -31.35046 -30.02160 -27.96515 -26.58642 -23.80876 -23.58542 -23.07179 -22.01388 -20.53412 -19.52403 -18.09724 -17.30548 -16.76580 -16.59958 -16.32138 -15.96407 -15.12267 -15.02930 -14.79955 -14.59945 -14.15160 -13.79247 -13.72163 -13.59300 -13.14555 -13.06039 -12.97993 -12.46974 -12.27349 -11.88562 -11.77369 -11.66834 -11.48238 -11.29452 -11.26246 -11.01826 -11.00891 -10.70975 -10.19187 -10.09638 -9.59821 -9.23996 -9.14106 -8.85227 -8.50266 -7.72909 -6.52142 -4.25797 0.32897 0.72798 1.96793 2.00866 2.94089 3.01799 3.37839 3.40331 3.42924 3.57203 3.78352 3.92100 4.04392 4.36947 4.44591 4.53536 4.71927 4.84309 4.86653 5.04154 5.21638 5.23977 5.30210 5.38068 5.51453 5.61435 5.64836 5.71100 5.80949 5.91027 6.01651 6.15405 6.31899 6.34697 6.71136 6.85083 7.00538 7.78724 8.14660 8.22487 8.45543 8.65735 9.42586 10.85580 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.004251 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.231255 B = 6584.592642 C = 8094.198161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.094 4.094 3 C -0.129 4.129 4 H 0.127 0.873 5 C 0.499 3.501 6 O -0.493 6.493 7 N -0.432 5.432 8 C 0.256 3.744 9 C -0.612 4.612 10 H 0.055 0.945 11 C 0.025 3.975 12 N -0.905 5.905 13 Si 1.079 2.921 14 H -0.289 1.289 15 H -0.284 1.284 16 H -0.284 1.284 17 N -0.164 5.164 18 C 0.063 3.937 19 C -0.004 4.004 20 C -0.062 4.062 21 C -0.149 4.149 22 C 0.115 3.885 23 F -0.133 7.133 24 C -0.147 4.147 25 C 0.007 3.993 26 Cl -0.012 7.012 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.268 0.732 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -13.101 18.323 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.152 4.152 4 H 0.145 0.855 5 C 0.285 3.715 6 O -0.365 6.365 7 N -0.251 5.251 8 C 0.138 3.862 9 C -0.651 4.651 10 H 0.074 0.926 11 C -0.180 4.180 12 N -0.540 5.540 13 Si 0.907 3.093 14 H -0.215 1.215 15 H -0.210 1.210 16 H -0.210 1.210 17 N 0.027 4.973 18 C -0.125 4.125 19 C -0.007 4.007 20 C -0.082 4.082 21 C -0.168 4.168 22 C 0.095 3.905 23 F -0.112 7.112 24 C -0.167 4.167 25 C -0.022 4.022 26 Cl 0.018 6.982 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.788 -11.046 16.343 19.921 hybrid contribution -0.517 -1.538 1.209 2.023 sum 2.271 -12.584 17.552 21.716 Atomic orbital electron populations 1.21873 0.94412 1.01887 1.03510 1.21298 0.97001 0.91851 1.03116 1.21654 0.93815 1.00241 0.99537 0.85504 1.21043 0.84909 0.79006 0.86532 1.90710 1.25711 1.54698 1.65420 1.50339 1.02167 1.53228 1.19392 1.19558 0.97741 0.92940 0.75934 1.22220 1.55114 0.90264 0.97453 0.92648 1.25856 0.93149 1.06933 0.92075 1.70761 1.45534 1.15175 1.22571 0.83396 0.77114 0.73653 0.75160 1.21490 1.21022 1.21015 1.75685 1.17269 1.04924 0.99386 1.22751 0.92728 1.02318 0.94688 1.17581 0.89796 1.00394 0.92931 1.21102 1.00821 0.95347 0.90973 1.21093 0.91733 1.03230 1.00720 1.17581 0.89325 0.98156 0.85487 1.91529 1.77370 1.85817 1.56453 1.20925 1.01567 1.01648 0.92551 1.20892 0.91733 0.98207 0.91371 1.98481 1.78945 1.79843 1.40935 0.90861 0.92384 0.92470 0.91412 0.90353 0.93954 0.94315 0.92133 0.83264 0.83634 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.78 37.16 0.36 -1.42 16 2 C -0.09 -1.09 5.31 -26.73 -0.14 -1.23 16 3 C -0.13 -1.92 2.43 -92.10 -0.22 -2.14 16 4 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 5 C 0.50 10.46 7.58 -10.49 -0.08 10.38 16 6 O -0.49 -11.66 16.23 5.53 0.09 -11.57 16 7 N -0.43 -9.86 3.52 -61.10 -0.22 -10.07 16 8 C 0.26 6.76 5.29 -5.20 -0.03 6.73 16 9 C -0.61 -17.67 9.39 -34.44 -0.32 -17.99 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.02 0.71 5.46 -17.82 -0.10 0.62 16 12 N -0.91 -27.23 13.65 55.43 0.76 -26.48 16 13 Si 1.08 25.70 29.90 -169.99 -5.08 20.62 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 N -0.16 -3.23 9.46 35.24 0.33 -2.90 16 18 C 0.06 0.97 6.59 -79.50 -0.52 0.45 16 19 C 0.00 -0.05 5.87 -105.02 -0.62 -0.67 16 20 C -0.06 -0.54 8.85 -39.17 -0.35 -0.88 16 21 C -0.15 -1.14 10.01 -39.57 -0.40 -1.54 16 22 C 0.12 1.05 7.30 -39.32 -0.29 0.77 16 23 F -0.13 -1.25 17.26 2.25 0.04 -1.22 16 24 C -0.15 -1.48 9.79 -39.54 -0.39 -1.87 16 25 C 0.01 0.09 6.35 -39.07 -0.25 -0.16 16 26 Cl -0.01 -0.18 26.23 -51.86 -1.36 -1.54 16 27 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.08 0.65 5.68 -51.93 -0.30 0.36 16 32 H 0.04 1.18 7.89 -51.93 -0.41 0.77 16 33 H 0.04 1.04 8.01 -51.93 -0.42 0.62 16 34 H 0.27 7.98 7.22 -40.82 -0.29 7.68 16 35 H 0.15 0.95 6.02 -52.49 -0.32 0.63 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -33.02 335.34 -7.53 -40.55 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -3.81 Total: -3.50 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.34 Total: -8.96 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.87 Total: -39.44 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.36 Total: -1.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.02 -7.53 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.020 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds