Wall clock time and date at job start Tue Mar 31 2020 13:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46623 * 2 1 4 4 H 1.08991 * 110.52444 * 52.20223 * 3 2 1 5 5 C 1.51624 * 110.90561 * 289.42684 * 3 2 1 6 6 O 1.21312 * 127.32540 * 61.55168 * 5 3 2 7 7 N 1.34872 * 105.34176 * 241.67231 * 5 3 2 8 8 C 1.46500 * 124.36345 * 179.87619 * 7 5 3 9 9 C 1.50696 * 109.46944 * 89.72595 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47364 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.46883 * 120.00040 * 13 11 9 16 16 H 1.48497 * 109.46870 * 239.99850 * 13 11 9 17 17 N 1.39158 * 111.26810 * 359.61295 * 7 5 3 18 18 C 1.29409 * 112.78124 * 0.26287 * 17 7 5 19 19 C 1.47432 * 126.53147 * 179.97438 * 18 17 7 20 20 C 1.39716 * 120.14174 * 180.02562 * 19 18 17 21 21 C 1.37851 * 119.88313 * 179.97438 * 20 19 18 22 22 C 1.38646 * 120.15787 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.85850 * 179.97438 * 22 21 20 24 24 C 1.38550 * 120.28080 * 359.97438 * 22 21 20 25 25 C 1.38036 * 120.11312 * 359.71870 * 24 22 21 26 26 Cl 1.73603 * 120.07817 * 180.27811 * 25 24 22 27 27 H 1.09002 * 109.47493 * 60.00413 * 1 2 3 28 28 H 1.09010 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47284 * 300.00013 * 1 2 3 30 30 H 1.08997 * 109.47284 * 239.99987 * 2 1 3 31 31 H 1.08998 * 109.47029 * 119.99617 * 2 1 3 32 32 H 1.09000 * 109.46609 * 329.72777 * 8 7 5 33 33 H 1.08999 * 109.46486 * 209.72856 * 8 7 5 34 34 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 35 35 H 1.07999 * 120.05827 * 0.02562 * 20 19 18 36 36 H 1.07999 * 119.92112 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.94158 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5774 2.0113 0.8066 5 6 1.7760 2.1097 -1.3358 6 8 0.6993 2.3133 -1.8563 7 7 2.9931 2.4261 -1.8233 8 6 3.2218 3.0916 -3.1082 9 6 3.2220 4.5851 -2.9072 10 1 3.0669 4.9974 -1.9211 11 6 3.4193 5.4254 -3.9825 12 7 3.6017 4.9234 -5.1843 13 14 3.4188 7.2767 -3.7335 14 1 3.1867 7.5833 -2.2992 15 1 4.7303 7.8329 -4.1532 16 1 2.3386 7.8857 -4.5505 17 7 4.0033 2.0441 -0.9457 18 6 3.5490 1.4738 0.1235 19 6 4.3484 0.9532 1.2476 20 6 3.7157 0.3585 2.3422 21 6 4.4683 -0.1270 3.3901 22 6 5.8508 -0.0259 3.3603 23 9 6.5824 -0.5033 4.3909 24 6 6.4851 0.5626 2.2783 25 6 5.7429 1.0468 1.2199 26 17 6.5391 1.7776 -0.1388 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.4290 2.8188 -3.8047 33 1 4.1845 2.7792 -3.5128 34 1 3.6017 3.9621 -5.3137 35 1 2.6389 0.2785 2.3669 36 1 3.9799 -0.5865 4.2367 37 1 7.5622 0.6381 2.2606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601930861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:48 Heat of formation + Delta-G solvation = -33.809880 kcal Electronic energy + Delta-G solvation = -24705.803870 eV Core-core repulsion = 20809.807273 eV Total energy + Delta-G solvation = -3895.996597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.00467 -42.46799 -40.17334 -38.39380 -37.45743 -36.50817 -35.11990 -33.47357 -32.15867 -31.32636 -29.25277 -28.32892 -25.49246 -24.65768 -24.08797 -23.22804 -21.76361 -20.92257 -19.33417 -18.91279 -18.11396 -17.69775 -17.47899 -16.71940 -16.59694 -16.26324 -16.08471 -15.72614 -15.67450 -15.01701 -14.85116 -14.69146 -14.45216 -14.33416 -14.10454 -13.86093 -13.73028 -13.41392 -13.33425 -13.00649 -12.62994 -12.60191 -12.39315 -12.27952 -12.12372 -12.04502 -12.02341 -11.38604 -11.29688 -10.75568 -10.59160 -10.32673 -10.02331 -9.25345 -8.81805 -6.60185 -0.61243 -0.01989 0.78070 1.04810 1.40535 1.45530 1.54199 1.60871 1.71902 2.42555 2.45605 2.58586 2.78026 2.98801 3.13267 3.46991 3.67526 3.78625 3.91326 4.03174 4.09360 4.31636 4.33869 4.37067 4.50866 4.55358 4.72562 4.81668 4.85424 4.89931 4.98986 5.06136 5.12227 5.19515 5.27690 5.44578 5.57973 5.61096 5.94682 6.29088 6.62846 6.84256 7.18077 8.52442 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.004251 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.231255 B = 6584.592642 C = 8094.198161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 C -0.115 4.115 4 H 0.160 0.840 5 C 0.479 3.521 6 O -0.539 6.539 7 N -0.457 5.457 8 C 0.271 3.729 9 C -0.623 4.623 10 H 0.042 0.958 11 C -0.023 4.023 12 N -0.923 5.923 13 Si 1.125 2.875 14 H -0.277 1.277 15 H -0.268 1.268 16 H -0.273 1.273 17 N -0.221 5.221 18 C 0.108 3.892 19 C -0.035 4.035 20 C -0.038 4.038 21 C -0.130 4.130 22 C 0.125 3.875 23 F -0.131 7.131 24 C -0.151 4.151 25 C -0.002 4.002 26 Cl -0.048 7.048 27 H 0.031 0.969 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.257 0.743 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -14.530 22.937 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.126 4.126 3 C -0.138 4.138 4 H 0.177 0.823 5 C 0.268 3.732 6 O -0.415 6.415 7 N -0.274 5.274 8 C 0.151 3.849 9 C -0.661 4.661 10 H 0.060 0.940 11 C -0.222 4.222 12 N -0.559 5.559 13 Si 0.945 3.055 14 H -0.202 1.202 15 H -0.193 1.193 16 H -0.198 1.198 17 N -0.028 5.028 18 C -0.080 4.080 19 C -0.038 4.038 20 C -0.058 4.058 21 C -0.148 4.148 22 C 0.105 3.895 23 F -0.109 7.109 24 C -0.171 4.171 25 C -0.031 4.031 26 Cl -0.019 7.019 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.202 0.798 36 H 0.205 0.795 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.396 -12.514 20.983 24.549 hybrid contribution -0.300 -1.312 0.070 1.347 sum 2.097 -13.826 21.053 25.274 Atomic orbital electron populations 1.21862 0.93845 1.03189 1.02554 1.21422 0.97401 0.89163 1.04570 1.21781 0.93496 1.02240 0.96264 0.82335 1.22110 0.83796 0.78743 0.88588 1.90664 1.26898 1.56795 1.67178 1.50163 1.03883 1.54184 1.19212 1.18936 0.95590 0.92280 0.78122 1.22433 1.55056 0.91750 0.96896 0.94001 1.27417 0.91940 1.11381 0.91461 1.70868 1.47083 1.14569 1.23383 0.82843 0.78161 0.68548 0.75936 1.20250 1.19349 1.19797 1.75795 1.16162 1.09622 1.01209 1.23509 0.93480 0.97571 0.93488 1.17709 0.89429 1.03222 0.93398 1.21454 1.02461 0.92809 0.89104 1.21508 0.90737 1.01422 1.01158 1.17743 0.90142 0.96901 0.84743 1.91552 1.77576 1.85593 1.56209 1.21001 1.02174 1.01582 0.92298 1.20998 0.92070 0.99046 0.91007 1.98476 1.79670 1.80696 1.43045 0.95024 0.89939 0.90243 0.93219 0.85468 0.96830 0.95994 0.93349 0.79809 0.79547 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.78 71.98 0.70 -2.38 16 2 C -0.09 -1.75 5.31 30.60 0.16 -1.58 16 3 C -0.11 -3.21 2.43 -11.75 -0.03 -3.24 16 4 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 5 C 0.48 20.92 7.58 87.94 0.67 21.59 16 6 O -0.54 -27.09 16.23 -3.13 -0.05 -27.14 16 7 N -0.46 -22.15 3.52 -465.56 -1.64 -23.79 16 8 C 0.27 15.50 5.29 85.63 0.45 15.95 16 9 C -0.62 -37.99 9.39 25.60 0.24 -37.75 16 10 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 11 C -0.02 -1.37 5.46 84.66 0.46 -0.90 16 12 N -0.92 -57.96 13.65 21.45 0.29 -57.67 16 13 Si 1.13 52.49 29.90 68.60 2.05 54.55 16 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 N -0.22 -9.03 9.46 -42.43 -0.40 -9.43 16 18 C 0.11 3.21 6.59 45.58 0.30 3.51 16 19 C -0.03 -0.74 5.87 -20.12 -0.12 -0.86 16 20 C -0.04 -0.43 8.85 22.54 0.20 -0.23 16 21 C -0.13 -1.13 10.01 22.28 0.22 -0.91 16 22 C 0.13 1.70 7.30 22.44 0.16 1.86 16 23 F -0.13 -1.87 17.26 44.97 0.78 -1.09 16 24 C -0.15 -2.63 9.79 22.30 0.22 -2.41 16 25 C 0.00 -0.05 6.35 22.60 0.14 0.10 16 26 Cl -0.05 -1.49 26.23 -2.72 -0.07 -1.56 16 27 H 0.03 0.90 6.47 -2.39 -0.02 0.88 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.13 1.32 5.68 -2.39 -0.01 1.30 16 32 H 0.01 0.85 7.89 -2.39 -0.02 0.83 16 33 H 0.02 1.30 8.01 -2.39 -0.02 1.28 16 34 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 35 H 0.18 0.83 6.02 -2.91 -0.02 0.81 16 36 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -80.46 335.34 5.97 -74.50 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.22 Total: -1.11 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 3.79 Total: -7.26 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -1.75 Total: -90.88 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.55 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -80.46 5.97 -74.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -80.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds