Wall clock time and date at job start Tue Mar 31 2020 13:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 H 1.08998 * 110.52796 * 307.79461 * 3 2 1 5 5 C 1.51631 * 110.40753 * 70.85856 * 3 2 1 6 6 O 1.21303 * 127.32668 * 298.70601 * 5 3 2 7 7 N 1.34868 * 105.33590 * 118.79976 * 5 3 2 8 8 C 1.46500 * 124.35757 * 179.90682 * 7 5 3 9 9 C 1.50696 * 109.47323 * 89.72496 * 8 7 5 10 10 H 1.07995 * 120.00332 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00210 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 N 1.39159 * 111.27783 * 359.63847 * 7 5 3 18 18 C 1.29415 * 112.77171 * 0.24192 * 17 7 5 19 19 C 1.47440 * 126.52139 * 179.97438 * 18 17 7 20 20 C 1.39725 * 120.13205 * 179.75305 * 19 18 17 21 21 C 1.37848 * 119.87474 * 179.72232 * 20 19 18 22 22 C 1.38647 * 120.16409 * 0.55437 * 21 20 19 23 23 F 1.35097 * 119.86373 * 179.74362 * 22 21 20 24 24 C 1.38550 * 120.27541 * 359.72558 * 22 21 20 25 25 C 1.38034 * 120.11756 * 359.97438 * 24 22 21 26 26 Cl 1.73607 * 120.08067 * 180.02562 * 25 24 22 27 27 H 1.09004 * 109.46760 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47150 * 299.99587 * 1 2 3 29 29 H 1.08997 * 109.47206 * 60.00126 * 1 2 3 30 30 H 1.08997 * 109.47704 * 239.99905 * 2 1 3 31 31 H 1.09007 * 109.47082 * 120.00009 * 2 1 3 32 32 H 1.09004 * 109.47134 * 329.71809 * 8 7 5 33 33 H 1.09010 * 109.47025 * 209.72243 * 8 7 5 34 34 H 0.97000 * 119.99462 * 359.97438 * 12 11 9 35 35 H 1.07995 * 120.05981 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.92282 * 180.27757 * 21 20 19 37 37 H 1.08005 * 119.93943 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5775 2.0114 -0.8066 5 6 1.7768 2.0963 1.3426 6 8 0.7010 2.2881 1.8690 7 7 2.9934 2.4210 1.8257 8 6 3.2223 3.0827 3.1126 9 6 3.3796 2.0424 4.1914 10 1 3.3150 0.9933 3.9435 11 6 3.6048 2.4301 5.4953 12 7 3.6829 3.7077 5.7974 13 14 3.7990 1.1405 6.8328 14 1 2.4697 0.8290 7.4167 15 1 4.3849 -0.0932 6.2497 16 1 4.6968 1.6606 7.8952 17 7 4.0035 2.0412 0.9472 18 6 3.5490 1.4738 -0.1235 19 6 4.3483 0.9568 -1.2494 20 6 3.7156 0.3607 -2.3434 21 6 4.4677 -0.1156 -3.3958 22 6 5.8502 -0.0149 -3.3659 23 9 6.5817 -0.4884 -4.3983 24 6 6.4847 0.5697 -2.2818 25 6 5.7425 1.0561 -1.2245 26 17 6.5385 1.7891 0.1331 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3729 3.7243 3.3474 33 1 4.1283 3.6861 3.0548 34 1 3.5824 4.3772 5.1028 35 1 2.6392 0.2770 -2.3661 36 1 3.9792 -0.5725 -4.2438 37 1 7.5619 0.6458 -2.2644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:51 Heat of formation + Delta-G solvation = -13.360416 kcal Electronic energy + Delta-G solvation = -24754.317457 eV Core-core repulsion = 20859.207616 eV Total energy + Delta-G solvation = -3895.109842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.25691 -41.05511 -39.23492 -36.83877 -36.43639 -34.90757 -33.40171 -32.13059 -31.34849 -30.01841 -27.95017 -26.58093 -23.80949 -23.56463 -23.03853 -22.02156 -20.52593 -19.52412 -18.09449 -17.35811 -16.71503 -16.61950 -16.06171 -15.95593 -15.60015 -15.02885 -14.62069 -14.41447 -14.14608 -13.77864 -13.69525 -13.57384 -13.42240 -13.05155 -12.73429 -12.46695 -12.29178 -11.82645 -11.76945 -11.70805 -11.47277 -11.37540 -11.09080 -11.04282 -10.99270 -10.71533 -10.18201 -10.08145 -9.59362 -9.24301 -9.13648 -8.85056 -8.50394 -7.72856 -6.51980 -4.25599 0.33017 0.72952 1.96833 2.00979 2.91807 3.04296 3.37829 3.40464 3.42206 3.58307 3.78929 3.92353 4.05134 4.37415 4.44793 4.53773 4.73521 4.86887 4.88706 5.04626 5.22263 5.24895 5.32793 5.41368 5.51720 5.61224 5.67150 5.73396 5.82883 5.94408 6.08627 6.16950 6.33450 6.38552 6.71306 6.85189 7.00593 7.78851 8.14740 8.22122 8.45423 8.65704 9.42728 10.85684 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.004225 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.560466 B = 6625.231640 C = 7906.296715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 C -0.128 4.128 4 H 0.127 0.873 5 C 0.499 3.501 6 O -0.493 6.493 7 N -0.433 5.433 8 C 0.256 3.744 9 C -0.611 4.611 10 H 0.055 0.945 11 C 0.025 3.975 12 N -0.904 5.904 13 Si 1.076 2.924 14 H -0.285 1.285 15 H -0.288 1.288 16 H -0.281 1.281 17 N -0.164 5.164 18 C 0.063 3.937 19 C -0.004 4.004 20 C -0.062 4.062 21 C -0.149 4.149 22 C 0.115 3.885 23 F -0.133 7.133 24 C -0.148 4.148 25 C 0.007 3.993 26 Cl -0.012 7.012 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.268 0.732 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -8.067 -20.833 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.151 4.151 4 H 0.145 0.855 5 C 0.285 3.715 6 O -0.365 6.365 7 N -0.251 5.251 8 C 0.138 3.862 9 C -0.650 4.650 10 H 0.073 0.927 11 C -0.180 4.180 12 N -0.540 5.540 13 Si 0.903 3.097 14 H -0.212 1.212 15 H -0.214 1.214 16 H -0.207 1.207 17 N 0.027 4.973 18 C -0.125 4.125 19 C -0.007 4.007 20 C -0.082 4.082 21 C -0.168 4.168 22 C 0.095 3.905 23 F -0.112 7.112 24 C -0.167 4.167 25 C -0.022 4.022 26 Cl 0.018 6.982 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.576 -7.637 -18.028 19.748 hybrid contribution -0.632 0.013 -2.007 2.104 sum 1.944 -7.625 -20.035 21.524 Atomic orbital electron populations 1.21868 0.94433 1.01964 1.03356 1.21314 0.97005 0.91882 1.03265 1.21657 0.93763 1.00503 0.99222 0.85535 1.21053 0.84925 0.78969 0.86572 1.90707 1.25883 1.54377 1.65559 1.50342 1.02146 1.53787 1.18861 1.19558 0.97720 0.93212 0.75690 1.22180 1.55075 0.93726 0.94017 0.92707 1.25849 0.93300 1.00098 0.98749 1.70795 1.45720 1.00344 1.37119 0.83444 0.77047 0.74080 0.75119 1.21170 1.21370 1.20662 1.75691 1.17137 1.05820 0.98612 1.22762 0.92736 1.02685 0.94332 1.17584 0.89812 1.00432 0.92881 1.21106 1.00839 0.95360 0.90929 1.21094 0.91740 1.03255 1.00696 1.17580 0.89324 0.98220 0.85425 1.91528 1.77380 1.85953 1.56307 1.20926 1.01556 1.01645 0.92574 1.20890 0.91730 0.98306 0.91277 1.98481 1.78953 1.79816 1.40951 0.92366 0.90777 0.92626 0.90439 0.91130 0.93963 0.94309 0.92168 0.83252 0.83638 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.78 37.16 0.36 -1.52 16 2 C -0.10 -1.20 5.29 -26.73 -0.14 -1.34 16 3 C -0.13 -1.90 2.46 -92.10 -0.23 -2.13 16 4 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 5 C 0.50 10.43 7.55 -10.49 -0.08 10.35 16 6 O -0.49 -11.63 16.18 5.54 0.09 -11.54 16 7 N -0.43 -9.85 3.52 -61.10 -0.22 -10.06 16 8 C 0.26 6.75 5.29 -5.20 -0.03 6.72 16 9 C -0.61 -17.60 9.39 -34.44 -0.32 -17.92 16 10 H 0.05 1.62 7.81 -52.49 -0.41 1.20 16 11 C 0.02 0.72 5.46 -17.82 -0.10 0.62 16 12 N -0.90 -27.20 13.65 55.43 0.76 -26.44 16 13 Si 1.08 25.58 29.90 -169.99 -5.08 20.50 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 N -0.16 -3.23 9.46 35.24 0.33 -2.89 16 18 C 0.06 0.97 6.59 -79.50 -0.52 0.45 16 19 C 0.00 -0.05 5.87 -105.01 -0.62 -0.67 16 20 C -0.06 -0.54 8.86 -39.17 -0.35 -0.88 16 21 C -0.15 -1.14 10.01 -39.57 -0.40 -1.54 16 22 C 0.12 1.06 7.30 -39.32 -0.29 0.77 16 23 F -0.13 -1.26 17.26 2.25 0.04 -1.22 16 24 C -0.15 -1.49 9.79 -39.54 -0.39 -1.87 16 25 C 0.01 0.09 6.35 -39.07 -0.25 -0.16 16 26 Cl -0.01 -0.18 26.23 -51.86 -1.36 -1.54 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.13 6.42 -51.93 -0.33 0.80 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.71 5.69 -51.93 -0.30 0.41 16 31 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 32 H 0.04 1.18 7.90 -51.93 -0.41 0.77 16 33 H 0.04 1.04 8.01 -51.92 -0.42 0.62 16 34 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 35 H 0.15 0.95 6.01 -52.49 -0.32 0.64 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -32.95 335.23 -7.53 -40.48 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -3.81 Total: -3.21 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.34 Total: -9.12 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.88 Total: -39.40 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.36 Total: -1.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.95 -7.53 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.118 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds