Wall clock time and date at job start Tue Mar 31 2020 14:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99550 * 3 2 1 5 5 H 1.48506 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47016 * 119.99647 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.52997 * 109.47042 * 125.00329 * 14 13 12 16 16 C 1.50709 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.38454 * 120.01991 * 269.72552 * 16 15 14 18 18 F 1.35102 * 120.01822 * 359.97418 * 17 16 15 19 19 C 1.38447 * 119.96417 * 179.70013 * 17 16 15 20 20 C 1.38229 * 119.99446 * 0.56803 * 19 17 16 21 21 C 1.38195 * 120.04300 * 359.73195 * 20 19 17 22 22 C 1.38296 * 120.01585 * 89.99198 * 16 15 14 23 23 Cl 1.73600 * 120.00359 * 359.97438 * 22 16 15 24 24 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 25 25 N 1.28636 * 110.17709 * 0.02562 * 24 13 12 26 26 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00636 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46926 * 59.99522 * 10 9 7 29 29 H 1.09001 * 109.47077 * 300.00394 * 10 9 7 30 30 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 31 31 H 1.09005 * 109.46746 * 244.99906 * 14 13 12 32 32 H 1.08999 * 109.47160 * 4.99611 * 14 13 12 33 33 H 1.09005 * 109.47005 * 299.99419 * 15 14 13 34 34 H 1.08999 * 109.47730 * 59.99630 * 15 14 13 35 35 H 1.07992 * 120.00298 * 180.29542 * 19 17 16 36 36 H 1.08007 * 119.97507 * 179.70361 * 20 19 17 37 37 H 1.07999 * 119.98606 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0790 -4.8022 0.0012 12 6 0.6242 -5.4794 -1.0789 13 7 -0.2265 -6.4186 -0.6042 14 6 -0.9617 -7.3966 -1.4099 15 6 -0.6613 -8.8072 -0.8990 16 6 -1.4181 -9.8133 -1.7275 17 6 -2.6915 -10.2040 -1.3497 18 9 -3.2562 -9.6840 -0.2380 19 6 -3.3882 -11.1236 -2.1150 20 6 -2.8077 -11.6600 -3.2491 21 6 -1.5342 -11.2747 -3.6227 22 6 -0.8388 -10.3508 -2.8624 23 17 0.7602 -9.8663 -3.3335 24 7 -0.2790 -6.3048 0.6769 25 7 0.4856 -5.3474 1.0690 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6849 -3.7145 -0.8894 30 1 0.8903 -5.3079 -2.1114 31 1 -2.0313 -7.2018 -1.3309 32 1 -0.6533 -7.3142 -2.4521 33 1 0.4083 -9.0020 -0.9780 34 1 -0.9697 -8.8896 0.1432 35 1 -4.3833 -11.4253 -1.8236 36 1 -3.3496 -12.3810 -3.8432 37 1 -1.0814 -11.6946 -4.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603244476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:40 Heat of formation + Delta-G solvation = 85.329142 kcal Electronic energy + Delta-G solvation = -23479.801498 eV Core-core repulsion = 19621.263908 eV Total energy + Delta-G solvation = -3858.537590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.43142 -42.89685 -39.92349 -37.03221 -36.01148 -34.66834 -32.90559 -31.75532 -31.03554 -29.89995 -29.12113 -25.75094 -25.19373 -23.45892 -22.79482 -22.20432 -21.43757 -20.33776 -18.31278 -17.47180 -17.42358 -17.02219 -16.41620 -16.12488 -15.95060 -15.31758 -14.66105 -14.60061 -14.53813 -14.03243 -13.95306 -13.89967 -13.51510 -13.19525 -12.87012 -12.65632 -12.56107 -12.01881 -11.98575 -11.90837 -11.67788 -11.31687 -11.17367 -10.84843 -10.76060 -10.38206 -10.09841 -9.88977 -9.68983 -9.41483 -9.30635 -8.83876 -8.77591 -6.87295 -5.69636 -2.99211 0.33467 0.41007 1.45736 1.90092 2.44435 2.79733 2.97626 3.49192 3.53201 3.54703 3.63175 3.96707 4.08706 4.21244 4.31493 4.50658 4.57581 4.66322 4.74982 4.79782 4.91753 5.08354 5.23186 5.34406 5.41554 5.50814 5.52678 5.56866 5.58149 5.68506 5.92464 6.08682 6.22709 6.46779 6.71468 6.80467 6.85333 7.74428 8.47674 8.90634 9.59194 10.15505 10.51582 11.53125 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002336 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.731319 B =11982.092327 C =12499.963781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.006 4.006 12 C -0.042 4.042 13 N -0.299 5.299 14 C 0.129 3.871 15 C -0.098 4.098 16 C -0.112 4.112 17 C 0.122 3.878 18 F -0.124 7.124 19 C -0.147 4.147 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.006 4.006 23 Cl -0.047 7.047 24 N -0.095 5.095 25 N -0.253 5.253 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.188 0.812 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 -29.692 -11.282 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.144 4.144 12 C -0.193 4.193 13 N -0.093 5.093 14 C 0.007 3.993 15 C -0.136 4.136 16 C -0.115 4.115 17 C 0.102 3.898 18 F -0.102 7.102 19 C -0.166 4.166 20 C -0.096 4.096 21 C -0.138 4.138 22 C -0.033 4.033 23 Cl -0.018 7.018 24 N -0.074 5.074 25 N -0.121 5.121 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.205 0.795 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.132 -30.047 -9.981 32.250 hybrid contribution 0.428 1.348 -1.001 1.732 sum -5.704 -28.699 -10.982 31.254 Atomic orbital electron populations 1.69678 1.05169 1.25728 1.57544 1.24764 0.95525 0.97717 1.02988 0.86228 0.78450 0.83405 0.77849 1.21265 1.21756 1.21188 1.19189 0.91060 0.83855 1.42928 0.90943 1.42305 1.05990 0.99263 1.89506 1.18941 0.90059 0.81398 0.99212 1.22465 1.02609 1.00874 0.88434 1.23419 0.98702 0.95094 1.02056 1.47187 1.30988 1.24329 1.06798 1.21872 0.97487 0.85628 0.94327 1.20845 1.01631 0.90514 1.00587 1.19499 0.94264 1.00989 0.96717 1.17368 0.91287 0.95904 0.85221 1.91581 1.84280 1.85068 1.49295 1.21319 1.01552 0.97739 0.96026 1.21022 0.94245 0.98701 0.95625 1.21157 0.94947 0.97228 1.00428 1.20640 0.88421 0.98678 0.95600 1.98416 1.21648 1.90712 1.91043 1.78239 1.19766 1.16931 0.92446 1.75100 1.06610 1.04014 1.26329 0.93485 0.78098 0.94348 0.94509 0.79496 0.88388 0.87668 0.88665 0.88019 0.83768 0.83786 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.48 5.59 -61.09 -0.34 -19.82 16 10 C 0.23 5.05 6.82 -5.20 -0.04 5.02 16 11 C -0.01 -0.12 6.61 -82.78 -0.55 -0.66 16 12 C -0.04 -0.67 11.50 -17.05 -0.20 -0.86 16 13 N -0.30 -4.44 3.44 -61.26 -0.21 -4.65 16 14 C 0.13 1.31 6.44 -4.05 -0.03 1.29 16 15 C -0.10 -0.92 4.90 -27.88 -0.14 -1.05 16 16 C -0.11 -0.89 5.14 -104.52 -0.54 -1.43 16 17 C 0.12 0.95 7.24 -39.43 -0.29 0.67 16 18 F -0.12 -1.20 16.47 2.25 0.04 -1.16 16 19 C -0.15 -0.81 10.03 -39.51 -0.40 -1.20 16 20 C -0.08 -0.32 10.04 -39.60 -0.40 -0.72 16 21 C -0.12 -0.60 9.83 -39.54 -0.39 -0.98 16 22 C -0.01 -0.04 6.31 -39.50 -0.25 -0.29 16 23 Cl -0.05 -0.35 27.30 -51.86 -1.42 -1.77 16 24 N -0.09 -1.74 12.91 60.35 0.78 -0.96 16 25 N -0.25 -5.35 12.41 33.29 0.41 -4.94 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.39 11.16 7.66 -40.82 -0.31 10.85 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.09 0.90 6.91 -51.93 -0.36 0.54 16 34 H 0.10 1.09 7.61 -51.93 -0.40 0.69 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.19 8.06 -52.48 -0.42 -0.23 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -34.98 345.46 -7.27 -42.25 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.99 Total: 4.31 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.44 Total: -7.78 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 1.36 Total: -58.88 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.42 Total: -1.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.98 -7.27 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603244476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.574 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds