Wall clock time and date at job start Tue Mar 31 2020 14:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99550 * 3 2 1 5 5 H 1.48506 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47016 * 119.99647 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.52997 * 109.47042 * 125.00329 * 14 13 12 16 16 C 1.50709 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.38454 * 120.01991 * 269.72552 * 16 15 14 18 18 F 1.35102 * 120.01822 * 359.97418 * 17 16 15 19 19 C 1.38447 * 119.96417 * 179.70013 * 17 16 15 20 20 C 1.38229 * 119.99446 * 0.56803 * 19 17 16 21 21 C 1.38195 * 120.04300 * 359.73195 * 20 19 17 22 22 C 1.38296 * 120.01585 * 89.99198 * 16 15 14 23 23 Cl 1.73600 * 120.00359 * 359.97438 * 22 16 15 24 24 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 25 25 N 1.28636 * 110.17709 * 0.02562 * 24 13 12 26 26 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00636 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46926 * 59.99522 * 10 9 7 29 29 H 1.09001 * 109.47077 * 300.00394 * 10 9 7 30 30 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 31 31 H 1.09005 * 109.46746 * 244.99906 * 14 13 12 32 32 H 1.08999 * 109.47160 * 4.99611 * 14 13 12 33 33 H 1.09005 * 109.47005 * 299.99419 * 15 14 13 34 34 H 1.08999 * 109.47730 * 59.99630 * 15 14 13 35 35 H 1.07992 * 120.00298 * 180.29542 * 19 17 16 36 36 H 1.08007 * 119.97507 * 179.70361 * 20 19 17 37 37 H 1.07999 * 119.98606 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0790 -4.8022 0.0012 12 6 0.6242 -5.4794 -1.0789 13 7 -0.2265 -6.4186 -0.6042 14 6 -0.9617 -7.3966 -1.4099 15 6 -0.6613 -8.8072 -0.8990 16 6 -1.4181 -9.8133 -1.7275 17 6 -2.6915 -10.2040 -1.3497 18 9 -3.2562 -9.6840 -0.2380 19 6 -3.3882 -11.1236 -2.1150 20 6 -2.8077 -11.6600 -3.2491 21 6 -1.5342 -11.2747 -3.6227 22 6 -0.8388 -10.3508 -2.8624 23 17 0.7602 -9.8663 -3.3335 24 7 -0.2790 -6.3048 0.6769 25 7 0.4856 -5.3474 1.0690 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6849 -3.7145 -0.8894 30 1 0.8903 -5.3079 -2.1114 31 1 -2.0313 -7.2018 -1.3309 32 1 -0.6533 -7.3142 -2.4521 33 1 0.4083 -9.0020 -0.9780 34 1 -0.9697 -8.8896 0.1432 35 1 -4.3833 -11.4253 -1.8236 36 1 -3.3496 -12.3810 -3.8432 37 1 -1.0814 -11.6946 -4.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603244476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:39 Heat of formation + Delta-G solvation = 63.020878 kcal Electronic energy + Delta-G solvation = -23480.768857 eV Core-core repulsion = 19621.263908 eV Total energy + Delta-G solvation = -3859.504949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.06124 -44.25507 -40.41150 -37.54014 -37.19906 -36.35930 -34.01134 -33.48195 -31.62091 -31.47514 -29.98337 -27.59110 -26.05184 -24.77057 -23.93100 -23.00796 -22.65013 -21.63711 -19.33748 -18.85032 -18.33150 -18.00738 -17.44292 -16.82344 -16.72932 -16.51300 -15.92823 -15.82587 -15.64149 -15.29115 -15.09911 -14.60844 -14.52675 -14.44237 -14.26763 -13.70396 -13.63459 -13.09227 -12.99960 -12.74502 -12.64942 -12.50127 -12.46574 -12.32328 -12.12142 -11.88583 -11.87384 -11.79265 -11.11793 -10.94285 -10.22793 -9.94738 -9.78562 -9.02001 -7.92692 -5.23481 -0.12634 -0.05626 0.61101 0.95421 1.36414 1.45469 1.51350 1.54319 1.60413 2.34911 2.60126 3.13503 3.29866 3.35136 3.40567 3.51703 3.61450 3.79726 3.87287 3.99824 4.06244 4.19271 4.19981 4.24721 4.38082 4.39478 4.60574 4.70882 4.82875 4.89315 5.00938 5.07358 5.14007 5.18307 5.19727 5.50920 5.62182 5.66471 6.26657 7.33252 7.50067 8.04523 8.30851 9.31194 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002336 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.731319 B =11982.092327 C =12499.963781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.740 5.740 10 C 0.236 3.764 11 C -0.038 4.038 12 C -0.018 4.018 13 N -0.284 5.284 14 C 0.122 3.878 15 C -0.089 4.089 16 C -0.123 4.123 17 C 0.098 3.902 18 F -0.143 7.143 19 C -0.145 4.145 20 C -0.065 4.065 21 C -0.114 4.114 22 C -0.014 4.014 23 Cl -0.055 7.055 24 N -0.111 5.111 25 N -0.297 5.297 26 H 0.251 0.749 27 H 0.370 0.630 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.228 0.772 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -31.327 -13.800 34.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.103 0.897 9 N -0.382 5.382 10 C 0.108 3.892 11 C -0.176 4.176 12 C -0.170 4.170 13 N -0.078 5.078 14 C 0.002 3.998 15 C -0.127 4.127 16 C -0.125 4.125 17 C 0.078 3.922 18 F -0.121 7.121 19 C -0.164 4.164 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.041 4.041 23 Cl -0.026 7.026 24 N -0.090 5.090 25 N -0.164 5.164 26 H 0.059 0.941 27 H 0.201 0.799 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.244 0.756 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.875 -31.743 -12.497 34.616 hybrid contribution 0.311 1.651 -0.295 1.706 sum -5.564 -30.092 -12.791 33.167 Atomic orbital electron populations 1.69861 1.06936 1.26171 1.59522 1.25678 0.96408 1.01454 1.03580 0.85103 0.77054 0.78526 0.78399 1.19661 1.22387 1.20470 1.19676 0.91819 0.84781 1.41298 0.89705 1.42517 1.05464 1.00716 1.89532 1.18970 0.90313 0.80194 0.99674 1.22315 1.03962 1.01674 0.89661 1.23874 0.96920 0.93471 1.02745 1.47530 1.30003 1.24173 1.06095 1.22312 0.97407 0.85038 0.95057 1.20670 1.01664 0.90524 0.99825 1.19342 0.94466 1.01427 0.97300 1.17681 0.91768 0.97276 0.85459 1.91532 1.84578 1.85583 1.50428 1.21620 1.02182 0.96658 0.95901 1.21450 0.93787 0.98188 0.94878 1.21505 0.95111 0.96089 1.00569 1.20739 0.88257 0.99427 0.95698 1.98413 1.22287 1.90891 1.91026 1.78149 1.19883 1.16713 0.94237 1.75032 1.08010 1.05384 1.27980 0.94068 0.79878 0.95312 0.91834 0.75582 0.87842 0.84732 0.88934 0.90069 0.82012 0.80265 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.74 -40.07 5.59 -347.18 -1.94 -42.02 16 10 C 0.24 10.22 6.82 85.63 0.58 10.80 16 11 C -0.04 -1.48 6.61 41.59 0.28 -1.21 16 12 C -0.02 -0.55 11.50 83.49 0.96 0.41 16 13 N -0.28 -8.23 3.44 -347.74 -1.20 -9.43 16 14 C 0.12 2.34 6.44 86.38 0.56 2.90 16 15 C -0.09 -1.64 4.90 29.85 0.15 -1.50 16 16 C -0.12 -1.83 5.14 -19.80 -0.10 -1.94 16 17 C 0.10 1.45 7.24 22.37 0.16 1.61 16 18 F -0.14 -2.83 16.47 44.97 0.74 -2.09 16 19 C -0.14 -1.24 10.03 22.32 0.22 -1.02 16 20 C -0.07 -0.30 10.04 22.26 0.22 -0.07 16 21 C -0.11 -0.78 9.83 22.30 0.22 -0.56 16 22 C -0.01 -0.17 6.31 22.32 0.14 -0.03 16 23 Cl -0.06 -0.72 27.30 -2.72 -0.07 -0.80 16 24 N -0.11 -4.15 12.91 37.02 0.48 -3.67 16 25 N -0.30 -12.91 12.41 -48.60 -0.60 -13.51 16 26 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.37 21.97 7.66 -92.71 -0.71 21.26 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.23 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.13 1.81 8.07 -2.39 -0.02 1.79 16 33 H 0.09 1.73 6.91 -2.38 -0.02 1.71 16 34 H 0.08 1.82 7.61 -2.39 -0.02 1.81 16 35 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 37 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -77.76 345.46 4.82 -72.94 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.41 Total: 19.38 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.70 Total: -8.04 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -2.98 Total: -130.51 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.74 Total: -2.09 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.80 kcal Total: -77.76 4.82 -72.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603244476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.957 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds