Wall clock time and date at job start Tue Mar 31 2020 13:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99453 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99276 * 3 2 1 5 5 H 1.48495 * 109.47820 * 29.99948 * 3 2 1 6 6 H 1.48503 * 109.46930 * 150.00222 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99646 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.35350 * 126.75487 * 125.01232 * 10 9 7 12 12 N 1.35307 * 106.17738 * 179.97438 * 11 10 9 13 13 C 1.46504 * 125.86774 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47114 * 124.99835 * 13 12 11 15 15 C 1.38420 * 120.02639 * 269.73294 * 14 13 12 16 16 F 1.35099 * 120.01194 * 359.97438 * 15 14 13 17 17 C 1.38475 * 119.96962 * 179.70154 * 15 14 13 18 18 C 1.38205 * 120.02889 * 0.58724 * 17 15 14 19 19 N 1.48016 * 119.97592 * 179.70142 * 18 17 15 20 20 O 1.21802 * 119.99895 * 179.97438 * 19 18 17 21 21 O 1.21799 * 120.00250 * 359.97438 * 19 18 17 22 22 C 1.38213 * 120.04704 * 359.68513 * 18 17 15 23 23 C 1.38416 * 120.02283 * 89.99812 * 14 13 12 24 24 F 1.35106 * 120.01211 * 359.97438 * 23 14 13 25 25 N 1.28719 * 108.26459 * 0.02562 * 12 11 10 26 26 N 1.28634 * 110.17554 * 359.97438 * 25 12 11 27 27 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47132 * 60.00016 * 9 7 2 29 29 H 1.09000 * 109.47099 * 299.99231 * 9 7 2 30 30 H 1.08003 * 126.90812 * 0.02562 * 11 10 9 31 31 H 1.08997 * 109.47010 * 245.00154 * 13 12 11 32 32 H 1.08996 * 109.46830 * 5.00379 * 13 12 11 33 33 H 1.07998 * 119.98595 * 180.31289 * 17 15 14 34 34 H 1.08005 * 119.98362 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0023 11 6 4.8709 -3.1715 -0.8852 12 7 5.0362 -4.4563 -0.4944 13 6 5.8821 -5.4527 -1.1563 14 6 6.8531 -6.0298 -0.1585 15 6 8.0937 -5.4424 0.0201 16 9 8.4350 -4.3518 -0.7004 17 6 8.9825 -5.9699 0.9417 18 6 8.6361 -7.0896 1.6742 19 7 9.5897 -7.6563 2.6541 20 8 9.2847 -8.6428 3.3002 21 8 10.6794 -7.1363 2.8144 22 6 7.3998 -7.6802 1.4925 23 6 6.5070 -7.1508 0.5760 24 9 5.2983 -7.7279 0.3991 25 7 4.3226 -4.6527 0.5587 26 7 3.7008 -3.5737 0.8808 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 5.3309 -2.6873 -1.7340 31 1 5.2574 -6.2502 -1.5584 32 1 6.4340 -4.9791 -1.9681 33 1 9.9486 -5.5089 1.0849 34 1 7.1300 -8.5548 2.0658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603249446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:40 Heat of formation + Delta-G solvation = 44.331128 kcal Electronic energy + Delta-G solvation = -26176.094926 eV Core-core repulsion = 21751.610058 eV Total energy + Delta-G solvation = -4424.484867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.082 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.97088 -49.81568 -42.85219 -42.75423 -39.87415 -37.13970 -35.63826 -33.48348 -32.32424 -31.54417 -31.40419 -28.98487 -28.00143 -26.00531 -24.13689 -23.31643 -23.00041 -21.52824 -20.36470 -20.29828 -19.46922 -18.15905 -18.12158 -17.64763 -17.46168 -17.20097 -16.76098 -16.56260 -16.40503 -16.10130 -15.81237 -14.93497 -14.50548 -14.15939 -13.93840 -13.76648 -13.24722 -13.12662 -13.01955 -12.77034 -12.26004 -12.16979 -12.10410 -11.82655 -11.65931 -11.28713 -10.80759 -10.72861 -10.29153 -10.18968 -10.02197 -9.86280 -9.67328 -9.39944 -8.60862 -8.42820 -6.05455 -4.04318 -1.07118 -0.16116 0.48418 0.58997 1.87250 2.01702 2.60877 2.84284 3.08834 3.20419 3.27527 3.31836 3.36148 3.37464 3.46778 3.68418 4.04414 4.21543 4.41004 4.53946 4.60655 4.63345 4.71414 4.88857 4.93587 5.25957 5.40607 5.51856 5.72290 5.75000 5.96339 6.71441 6.81191 6.96572 7.03027 7.11030 7.65682 8.50685 8.99075 9.04488 9.53097 11.07940 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.002824 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.836583 B = 9912.105062 C =10247.031975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.043 3.957 11 C -0.073 4.073 12 N -0.310 5.310 13 C 0.162 3.838 14 C -0.138 4.138 15 C 0.161 3.839 16 F -0.104 7.104 17 C -0.108 4.108 18 C 0.022 3.978 19 N 0.025 4.975 20 O -0.138 6.138 21 O -0.140 6.140 22 C -0.106 4.106 23 C 0.178 3.822 24 F -0.096 7.096 25 N -0.102 5.102 26 N -0.245 5.245 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.186 0.814 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.177 0.823 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.451 -15.532 -3.611 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.094 0.906 9 C 0.020 3.980 10 C -0.093 4.093 11 C -0.221 4.221 12 N -0.106 5.106 13 C 0.040 3.960 14 C -0.141 4.141 15 C 0.140 3.860 16 F -0.082 7.082 17 C -0.128 4.128 18 C -0.061 4.061 19 N 0.549 4.451 20 O -0.357 6.357 21 O -0.358 6.358 22 C -0.126 4.126 23 C 0.157 3.843 24 F -0.074 7.074 25 N -0.081 5.081 26 N -0.112 5.112 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.203 0.797 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.194 0.806 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.337 -16.124 -3.085 26.136 hybrid contribution 0.796 1.517 -0.877 1.924 sum 21.133 -14.607 -3.962 25.994 Atomic orbital electron populations 1.69897 1.06249 1.26912 1.50718 1.24974 0.94769 0.98894 0.94636 0.86830 0.80465 0.83832 0.78508 1.20178 1.21164 1.18913 1.20892 0.88038 0.94902 1.50950 0.90562 1.18179 0.97874 0.84289 0.97655 1.22554 0.95628 0.99148 0.92017 1.23391 1.07902 0.84972 1.05827 1.47042 1.32612 1.09428 1.21470 1.20594 0.90757 0.92468 0.92213 1.20269 0.95506 0.96789 1.01516 1.16599 0.91913 0.85346 0.92122 1.91648 1.91946 1.49776 1.74835 1.20894 1.02520 0.94886 0.94481 1.20361 0.91414 0.98071 0.96284 1.43337 1.01215 1.00251 1.00310 1.94599 1.82028 1.14707 1.44328 1.94593 1.08055 1.62243 1.70954 1.20965 0.90887 1.02389 0.98350 1.16566 0.81765 0.91390 0.94620 1.91689 1.39781 1.82458 1.93439 1.78282 1.06742 1.21724 1.01330 1.75128 1.16952 0.95852 1.23295 0.92600 0.94335 0.94974 0.79658 0.86248 0.85497 0.80567 0.80421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.51 -14.57 9.64 -34.44 -0.33 -14.90 16 8 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16 9 C 0.06 1.39 4.62 -29.04 -0.13 1.25 16 10 C 0.04 0.91 6.44 -82.78 -0.53 0.38 16 11 C -0.07 -1.17 11.49 -17.05 -0.20 -1.36 16 12 N -0.31 -4.52 3.43 -62.44 -0.21 -4.74 16 13 C 0.16 1.41 6.23 -5.19 -0.03 1.38 16 14 C -0.14 -1.15 5.26 -104.49 -0.55 -1.70 16 15 C 0.16 1.24 7.24 -39.43 -0.29 0.95 16 16 F -0.10 -0.83 16.47 2.25 0.04 -0.79 16 17 C -0.11 -0.76 9.53 -39.51 -0.38 -1.14 16 18 C 0.02 0.17 6.85 -79.97 -0.55 -0.37 16 19 N 0.02 0.24 4.45 33.95 0.15 0.39 16 20 O -0.14 -1.44 18.45 -29.46 -0.54 -1.98 16 21 O -0.14 -1.45 18.45 -29.46 -0.54 -2.00 16 22 C -0.11 -0.79 9.53 -39.51 -0.38 -1.17 16 23 C 0.18 1.49 7.24 -39.43 -0.29 1.21 16 24 F -0.10 -0.93 16.48 2.25 0.04 -0.89 16 25 N -0.10 -1.92 12.92 60.35 0.78 -1.14 16 26 N -0.24 -5.54 12.40 33.29 0.41 -5.13 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.04 0.92 7.20 -51.93 -0.37 0.55 16 29 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 30 H 0.19 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.12 0.86 7.64 -51.93 -0.40 0.46 16 32 H 0.13 0.70 7.56 -51.93 -0.39 0.30 16 33 H 0.18 0.96 7.61 -52.49 -0.40 0.56 16 34 H 0.18 1.05 7.61 -52.48 -0.40 0.65 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -34.83 324.30 -5.00 -39.83 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -2.36 Total: -4.21 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.75 Total: -13.59 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 1.90 Total: -37.51 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -1.09 Total: -3.98 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.07 Total: -1.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.83 -5.00 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603249446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.162 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds