Wall clock time and date at job start Tue Mar 31 2020 13:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99453 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99276 * 3 2 1 5 5 H 1.48495 * 109.47820 * 29.99948 * 3 2 1 6 6 H 1.48503 * 109.46930 * 150.00222 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99646 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.35350 * 126.75487 * 125.01232 * 10 9 7 12 12 N 1.35307 * 106.17738 * 179.97438 * 11 10 9 13 13 C 1.46504 * 125.86774 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47114 * 124.99835 * 13 12 11 15 15 C 1.38420 * 120.02639 * 269.73294 * 14 13 12 16 16 F 1.35099 * 120.01194 * 359.97438 * 15 14 13 17 17 C 1.38475 * 119.96962 * 179.70154 * 15 14 13 18 18 C 1.38205 * 120.02889 * 0.58724 * 17 15 14 19 19 N 1.48016 * 119.97592 * 179.70142 * 18 17 15 20 20 O 1.21802 * 119.99895 * 179.97438 * 19 18 17 21 21 O 1.21799 * 120.00250 * 359.97438 * 19 18 17 22 22 C 1.38213 * 120.04704 * 359.68513 * 18 17 15 23 23 C 1.38416 * 120.02283 * 89.99812 * 14 13 12 24 24 F 1.35106 * 120.01211 * 359.97438 * 23 14 13 25 25 N 1.28719 * 108.26459 * 0.02562 * 12 11 10 26 26 N 1.28634 * 110.17554 * 359.97438 * 25 12 11 27 27 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47132 * 60.00016 * 9 7 2 29 29 H 1.09000 * 109.47099 * 299.99231 * 9 7 2 30 30 H 1.08003 * 126.90812 * 0.02562 * 11 10 9 31 31 H 1.08997 * 109.47010 * 245.00154 * 13 12 11 32 32 H 1.08996 * 109.46830 * 5.00379 * 13 12 11 33 33 H 1.07998 * 119.98595 * 180.31289 * 17 15 14 34 34 H 1.08005 * 119.98362 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0023 11 6 4.8709 -3.1715 -0.8852 12 7 5.0362 -4.4563 -0.4944 13 6 5.8821 -5.4527 -1.1563 14 6 6.8531 -6.0298 -0.1585 15 6 8.0937 -5.4424 0.0201 16 9 8.4350 -4.3518 -0.7004 17 6 8.9825 -5.9699 0.9417 18 6 8.6361 -7.0896 1.6742 19 7 9.5897 -7.6563 2.6541 20 8 9.2847 -8.6428 3.3002 21 8 10.6794 -7.1363 2.8144 22 6 7.3998 -7.6802 1.4925 23 6 6.5070 -7.1508 0.5760 24 9 5.2983 -7.7279 0.3991 25 7 4.3226 -4.6527 0.5587 26 7 3.7008 -3.5737 0.8808 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 5.3309 -2.6873 -1.7340 31 1 5.2574 -6.2502 -1.5584 32 1 6.4340 -4.9791 -1.9681 33 1 9.9486 -5.5089 1.0849 34 1 7.1300 -8.5548 2.0658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603249446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:40 Heat of formation + Delta-G solvation = 21.762848 kcal Electronic energy + Delta-G solvation = -26177.073560 eV Core-core repulsion = 21751.610058 eV Total energy + Delta-G solvation = -4425.463501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.56504 -50.51485 -44.17165 -43.50415 -40.52795 -37.90260 -36.68961 -35.30142 -33.49494 -33.04670 -32.14651 -30.13531 -29.44400 -26.83709 -25.17924 -24.69968 -23.90223 -22.74156 -21.73066 -21.04591 -20.19624 -18.95380 -18.87706 -18.79789 -18.50345 -18.27879 -17.95591 -17.24250 -17.18575 -16.76023 -16.73530 -16.31273 -15.71678 -15.64269 -15.14831 -14.53497 -14.41221 -14.12579 -13.98445 -13.80594 -13.64253 -13.43152 -12.90134 -12.87208 -12.58842 -12.49397 -12.45316 -12.42241 -11.92272 -11.66157 -11.49371 -11.07310 -10.96919 -10.74269 -10.46133 -9.93992 -8.24782 -6.30364 -1.77002 -0.75625 -0.25984 -0.10057 0.63048 1.24326 1.40844 1.45578 1.56505 1.68064 1.75640 2.21639 2.40589 2.46666 2.63185 2.86763 3.07700 3.09585 3.45184 3.49579 3.71902 3.92681 4.00273 4.04275 4.08692 4.19234 4.35776 4.36628 4.63329 4.75158 5.01145 5.02694 5.27195 5.33693 5.59744 5.67589 6.23228 6.31060 6.75358 7.31661 7.61108 8.93013 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.002824 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.836583 B = 9912.105062 C =10247.031975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.254 1.254 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.519 4.519 8 H 0.018 0.982 9 C 0.066 3.934 10 C -0.007 4.007 11 C -0.036 4.036 12 N -0.293 5.293 13 C 0.148 3.852 14 C -0.139 4.139 15 C 0.166 3.834 16 F -0.101 7.101 17 C -0.097 4.097 18 C 0.017 3.983 19 N 0.026 4.974 20 O -0.156 6.156 21 O -0.146 6.146 22 C -0.099 4.099 23 C 0.168 3.832 24 F -0.107 7.107 25 N -0.117 5.117 26 N -0.305 5.305 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.238 0.762 31 H 0.137 0.863 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.661 -14.679 -5.383 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.557 4.557 8 H 0.036 0.964 9 C 0.027 3.973 10 C -0.144 4.144 11 C -0.186 4.186 12 N -0.088 5.088 13 C 0.029 3.971 14 C -0.142 4.142 15 C 0.145 3.855 16 F -0.079 7.079 17 C -0.116 4.116 18 C -0.066 4.066 19 N 0.547 4.453 20 O -0.372 6.372 21 O -0.365 6.365 22 C -0.119 4.119 23 C 0.147 3.853 24 F -0.084 7.084 25 N -0.095 5.095 26 N -0.172 5.172 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.254 0.746 31 H 0.155 0.845 32 H 0.188 0.812 33 H 0.212 0.788 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 23.575 -15.350 -4.844 28.546 hybrid contribution -0.173 1.079 -0.379 1.157 sum 23.401 -14.271 -5.224 27.903 Atomic orbital electron populations 1.70090 1.08680 1.28274 1.52600 1.26085 0.95679 1.03770 0.93924 0.85545 0.79390 0.77236 0.79762 1.17873 1.21544 1.16481 1.21133 0.91159 0.92804 1.50606 0.96359 1.17989 0.94042 0.86725 0.98565 1.22433 0.98865 0.98608 0.94544 1.23911 1.05030 0.84779 1.04865 1.47448 1.31253 1.10095 1.19979 1.21232 0.90811 0.92283 0.92801 1.20251 0.95718 0.96737 1.01486 1.16496 0.91615 0.85274 0.92108 1.91660 1.91894 1.49602 1.74736 1.21074 1.03066 0.94064 0.93433 1.20352 0.91254 0.98653 0.96342 1.43524 1.01315 1.00060 1.00364 1.94600 1.82189 1.15300 1.45117 1.94581 1.08577 1.62176 1.71149 1.21061 0.90469 1.02495 0.97859 1.16638 0.81568 0.91867 0.95194 1.91667 1.40465 1.82725 1.93587 1.78151 1.07612 1.20641 1.03133 1.75044 1.19190 0.97303 1.25614 0.92457 0.94847 0.91901 0.74594 0.84536 0.81204 0.78818 0.79345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.99 13.96 21.45 0.30 -60.69 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.96 42.73 27.47 68.60 1.88 44.62 16 4 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.52 -30.59 9.64 25.60 0.25 -30.34 16 8 H 0.02 1.24 7.98 -2.91 -0.02 1.21 16 9 C 0.07 3.04 4.62 29.10 0.13 3.17 16 10 C -0.01 -0.28 6.44 41.60 0.27 -0.01 16 11 C -0.04 -1.04 11.49 83.49 0.96 -0.08 16 12 N -0.29 -7.76 3.43 -351.46 -1.21 -8.96 16 13 C 0.15 2.02 6.23 85.63 0.53 2.56 16 14 C -0.14 -1.92 5.26 -19.78 -0.10 -2.02 16 15 C 0.17 1.99 7.24 22.37 0.16 2.15 16 16 F -0.10 -1.18 16.47 44.97 0.74 -0.44 16 17 C -0.10 -1.11 9.53 22.32 0.21 -0.89 16 18 C 0.02 0.24 6.85 36.36 0.25 0.49 16 19 N 0.03 0.48 4.45 -46.50 -0.21 0.27 16 20 O -0.16 -3.18 18.45 18.88 0.35 -2.83 16 21 O -0.15 -2.84 18.45 18.89 0.35 -2.49 16 22 C -0.10 -1.33 9.53 22.32 0.21 -1.12 16 23 C 0.17 2.54 7.24 22.37 0.16 2.71 16 24 F -0.11 -1.96 16.48 44.97 0.74 -1.22 16 25 N -0.12 -4.33 12.92 37.02 0.48 -3.85 16 26 N -0.30 -14.08 12.40 -48.60 -0.60 -14.68 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.03 1.55 7.20 -2.39 -0.02 1.54 16 29 H 0.06 2.49 7.55 -2.39 -0.02 2.47 16 30 H 0.24 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.14 1.50 7.64 -2.39 -0.02 1.48 16 32 H 0.17 0.89 7.56 -2.39 -0.02 0.87 16 33 H 0.19 1.51 7.61 -2.91 -0.02 1.49 16 34 H 0.19 2.04 7.61 -2.91 -0.02 2.02 16 Total: -1.00 -81.57 324.30 7.46 -74.11 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: 1.13 Total: -1.00 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.50 Total: -22.84 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.24 Total: -87.91 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: 0.70 Total: -5.32 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 1.48 Total: -1.66 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Total: -81.57 7.46 -74.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603249446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.878 kcal (2) G-P(sol) polarization free energy of solvation -81.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds