Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48498 * 109.47596 * 274.68415 * 3 2 1 5 5 H 1.48508 * 109.47046 * 34.68835 * 3 2 1 6 6 H 1.48502 * 109.47005 * 154.67992 * 3 2 1 7 7 C 1.39904 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 197.47811 * 7 2 1 9 9 C 1.41136 * 120.00001 * 17.48074 * 7 2 1 10 10 C 1.40879 * 120.16367 * 25.18001 * 9 7 2 11 11 C 1.36354 * 119.82846 * 180.27887 * 10 9 7 12 12 C 1.39505 * 120.16928 * 359.45994 * 11 10 9 13 13 N 1.39123 * 119.83723 * 180.27428 * 12 11 10 14 14 C 1.34776 * 119.99824 * 33.29142 * 13 12 11 15 15 O 1.21605 * 120.00289 * 5.21140 * 14 13 12 16 16 C 1.47469 * 119.99957 * 185.21046 * 14 13 12 17 17 C 1.40124 * 119.93466 * 359.72764 * 16 14 13 18 18 C 1.36285 * 120.38222 * 179.73384 * 17 16 14 19 19 C 1.39863 * 120.04488 * 0.52079 * 18 17 16 20 20 N 1.35812 * 133.51302 * 179.76191 * 19 18 17 21 21 C 1.30783 * 108.79614 * 179.97438 * 20 19 18 22 22 O 1.35102 * 124.92371 * 180.02562 * 21 20 19 23 23 O 1.34325 * 110.16258 * 359.97438 * 21 20 19 24 24 C 1.35314 * 108.12219 * 0.02562 * 23 21 20 25 25 C 1.38092 * 133.76295 * 180.02562 * 24 23 21 26 26 C 1.39518 * 120.32901 * 0.25463 * 12 11 10 27 27 C 1.36360 * 120.16369 * 0.02562 * 26 12 11 28 28 H 0.96995 * 120.00474 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.08448 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.91320 * 179.73553 * 11 10 9 31 31 H 0.97003 * 119.99993 * 213.28517 * 13 12 11 32 32 H 1.07997 * 119.80741 * 359.97027 * 17 16 14 33 33 H 1.07997 * 119.97512 * 180.29482 * 18 17 16 34 34 H 0.96702 * 113.99547 * 359.97079 * 22 21 20 35 35 H 1.08001 * 120.18187 * 359.97438 * 25 24 23 36 36 H 1.07998 * 119.91613 * 180.02562 * 26 12 11 37 37 H 1.07994 * 120.08174 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3911 2.1038 -1.3953 5 1 1.4930 2.6221 0.7968 6 1 3.5861 1.4138 0.5988 7 6 2.0083 -1.2116 -0.0005 8 1 3.0509 -1.2332 0.2804 9 6 1.3516 -2.4055 -0.3682 10 6 0.2244 -2.3623 -1.2122 11 6 -0.4083 -3.5195 -1.5585 12 6 0.0646 -4.7449 -1.0884 13 7 -0.5828 -5.9218 -1.4507 14 6 -1.1586 -6.0279 -2.6647 15 8 -1.0316 -5.1330 -3.4782 16 6 -1.9426 -7.2292 -3.0064 17 6 -2.0833 -8.2621 -2.0700 18 6 -2.8103 -9.3740 -2.3742 19 6 -3.4126 -9.4947 -3.6307 20 7 -4.1736 -10.4563 -4.2144 21 6 -4.4867 -10.0696 -5.4239 22 8 -5.2376 -10.7806 -6.2932 23 8 -3.9544 -8.8624 -5.6763 24 6 -3.2721 -8.4651 -4.5774 25 6 -2.5396 -7.3373 -4.2638 26 6 1.1839 -4.7961 -0.2571 27 6 1.8236 -3.6467 0.1023 28 1 -0.4850 0.8400 0.0004 29 1 -0.1401 -1.4148 -1.5807 30 1 -1.2751 -3.4877 -2.2020 31 1 -0.6197 -6.6660 -0.8297 32 1 -1.6160 -8.1749 -1.1003 33 1 -2.9184 -10.1640 -1.6458 34 1 -5.5407 -11.6311 -5.9469 35 1 -2.4288 -6.5432 -4.9874 36 1 1.5446 -5.7483 0.1026 37 1 2.6901 -3.6879 0.7456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604326592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = -0.835827 kcal Electronic energy + Delta-G solvation = -24963.533214 eV Core-core repulsion = 21059.026540 eV Total energy + Delta-G solvation = -3904.506675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.65615 -40.09155 -38.81040 -37.91757 -37.02153 -34.87359 -34.59378 -33.05851 -31.07534 -30.22363 -29.49764 -28.72697 -25.43410 -24.14434 -23.84310 -22.36943 -21.62517 -21.15730 -20.05417 -19.38136 -18.42830 -18.01726 -17.60278 -17.35816 -16.87878 -15.82057 -15.39001 -15.04912 -14.80387 -14.67930 -14.27451 -14.13565 -13.95708 -13.77257 -13.20113 -13.06167 -12.76366 -12.63812 -12.08549 -11.92180 -11.82860 -11.49429 -11.28473 -11.14869 -11.10480 -10.91471 -10.70706 -9.99583 -9.72471 -9.53763 -9.22430 -9.13762 -8.96524 -8.58077 -7.56307 -7.03737 -6.77205 -4.32977 0.17165 0.86133 1.16134 1.86525 2.57845 2.93781 3.05868 3.06225 3.07885 3.10278 3.21106 3.57915 3.75830 3.91174 4.02574 4.38458 4.60050 4.63075 4.74278 4.93071 4.95382 5.24621 5.61670 5.66480 5.70254 5.88166 5.93805 6.10033 6.13050 6.35110 6.45757 6.72774 6.93844 7.00426 7.11188 7.17573 7.24264 7.55095 7.62604 7.89972 8.02285 8.14439 8.26245 8.58192 8.66318 8.84783 8.95823 10.14431 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.035743 B = 0.002184 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.184688 B =12819.773062 C =13353.685094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.156 4.156 11 C -0.084 4.084 12 C -0.011 4.011 13 N -0.638 5.638 14 C 0.542 3.458 15 O -0.523 6.523 16 C -0.104 4.104 17 C -0.079 4.079 18 C -0.076 4.076 19 C 0.068 3.932 20 N -0.526 5.526 21 C 0.454 3.546 22 O -0.413 6.413 23 O -0.197 6.197 24 C -0.007 4.007 25 C -0.020 4.020 26 C -0.101 4.101 27 C -0.215 4.215 28 H 0.282 0.718 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.394 0.606 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.442 0.558 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 -18.307 -5.230 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.176 4.176 11 C -0.103 4.103 12 C -0.103 4.103 13 N -0.280 5.280 14 C 0.329 3.671 15 O -0.400 6.400 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.045 4.045 20 N -0.277 5.277 21 C 0.205 3.795 22 O -0.215 6.215 23 O -0.090 6.090 24 C -0.056 4.056 25 C -0.039 4.039 26 C -0.121 4.121 27 C -0.235 4.235 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.229 0.771 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.302 0.698 35 H 0.170 0.830 36 H 0.109 0.891 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.599 -17.604 -6.047 20.504 hybrid contribution 0.137 0.330 0.104 0.372 sum -8.462 -17.274 -5.942 20.132 Atomic orbital electron populations 1.69839 1.07606 1.29373 1.34518 1.25947 0.94761 1.01450 0.92275 0.86279 0.80549 0.80559 0.79226 1.19272 1.20274 1.18538 1.19584 0.98038 0.91250 1.39615 0.90268 1.17688 0.91351 0.92121 0.88468 1.20977 0.99243 0.96776 1.00555 1.20427 0.99203 0.91254 0.99465 1.17113 0.98909 0.84285 1.09976 1.42818 1.53994 1.16338 1.14885 1.17837 0.80780 0.86124 0.82366 1.90812 1.60414 1.40481 1.48316 1.19819 1.00946 0.96188 0.93852 1.20977 0.97406 0.92144 0.99409 1.19880 0.97244 0.98914 0.93466 1.19622 0.98439 0.90206 0.96212 1.71144 1.21893 1.29679 1.04976 1.22307 0.89629 0.82012 0.85545 1.84655 1.63505 1.36127 1.37223 1.84394 1.56254 1.30458 1.37930 1.19782 1.01615 0.99111 0.85058 1.19868 0.93248 0.94185 0.96644 1.20027 0.94505 0.97241 1.00332 1.20539 1.03636 0.92547 1.06817 0.90747 0.86210 0.87927 0.77091 0.83920 0.83901 0.69807 0.82991 0.89063 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.23 10.97 55.55 0.61 -19.62 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.89 9.03 -37.86 -0.34 -12.23 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.11 2.80 5.57 -106.80 -0.59 2.21 16 10 C -0.16 -4.11 8.63 -39.26 -0.34 -4.45 16 11 C -0.08 -2.04 8.57 -39.79 -0.34 -2.38 16 12 C -0.01 -0.23 6.29 -83.60 -0.53 -0.76 16 13 N -0.64 -10.79 5.25 -10.70 -0.06 -10.85 16 14 C 0.54 9.38 7.48 -12.50 -0.09 9.29 16 15 O -0.52 -11.18 13.97 5.27 0.07 -11.11 16 16 C -0.10 -1.39 5.88 -104.92 -0.62 -2.01 16 17 C -0.08 -0.80 9.46 -39.58 -0.37 -1.18 16 18 C -0.08 -0.74 10.03 -39.68 -0.40 -1.14 16 19 C 0.07 0.79 7.23 -84.62 -0.61 0.18 16 20 N -0.53 -5.71 11.36 -12.72 -0.14 -5.85 16 21 C 0.45 4.52 9.54 52.32 0.50 5.02 16 22 O -0.41 -2.50 13.62 -40.31 -0.55 -3.05 16 23 O -0.20 -2.41 10.79 -20.52 -0.22 -2.63 16 24 C -0.01 -0.09 7.40 -38.76 -0.29 -0.37 16 25 C -0.02 -0.26 9.60 -39.12 -0.38 -0.64 16 26 C -0.10 -2.14 9.89 -39.78 -0.39 -2.54 16 27 C -0.22 -5.10 9.74 -39.26 -0.38 -5.48 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.12 3.28 6.19 -52.48 -0.32 2.96 16 30 H 0.10 2.51 6.38 -52.48 -0.33 2.18 16 31 H 0.39 5.00 6.82 -40.82 -0.28 4.72 16 32 H 0.14 1.05 6.38 -52.49 -0.33 0.72 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.44 0.18 9.06 45.56 0.41 0.59 16 35 H 0.15 2.04 7.64 -52.49 -0.40 1.64 16 36 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.58 329.19 -7.70 -40.28 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -2.08 Total: 9.13 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -5.27 Total: -14.72 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.41 Total: -36.32 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.70 Total: -16.79 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.58 -7.70 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604326592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.444 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds