Wall clock time and date at job start Tue Mar 31 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48498 * 109.47596 * 274.68415 * 3 2 1 5 5 H 1.48508 * 109.47046 * 34.68835 * 3 2 1 6 6 H 1.48502 * 109.47005 * 154.67992 * 3 2 1 7 7 C 1.39904 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 197.47811 * 7 2 1 9 9 C 1.41136 * 120.00001 * 17.48074 * 7 2 1 10 10 C 1.40879 * 120.16367 * 25.18001 * 9 7 2 11 11 C 1.36354 * 119.82846 * 180.27887 * 10 9 7 12 12 C 1.39505 * 120.16928 * 359.45994 * 11 10 9 13 13 N 1.39123 * 119.83723 * 180.27428 * 12 11 10 14 14 C 1.34776 * 119.99824 * 33.29142 * 13 12 11 15 15 O 1.21605 * 120.00289 * 5.21140 * 14 13 12 16 16 C 1.47469 * 119.99957 * 185.21046 * 14 13 12 17 17 C 1.40124 * 119.93466 * 359.72764 * 16 14 13 18 18 C 1.36285 * 120.38222 * 179.73384 * 17 16 14 19 19 C 1.39863 * 120.04488 * 0.52079 * 18 17 16 20 20 N 1.35812 * 133.51302 * 179.76191 * 19 18 17 21 21 C 1.30783 * 108.79614 * 179.97438 * 20 19 18 22 22 O 1.35102 * 124.92371 * 180.02562 * 21 20 19 23 23 O 1.34325 * 110.16258 * 359.97438 * 21 20 19 24 24 C 1.35314 * 108.12219 * 0.02562 * 23 21 20 25 25 C 1.38092 * 133.76295 * 180.02562 * 24 23 21 26 26 C 1.39518 * 120.32901 * 0.25463 * 12 11 10 27 27 C 1.36360 * 120.16369 * 0.02562 * 26 12 11 28 28 H 0.96995 * 120.00474 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.08448 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.91320 * 179.73553 * 11 10 9 31 31 H 0.97003 * 119.99993 * 213.28517 * 13 12 11 32 32 H 1.07997 * 119.80741 * 359.97027 * 17 16 14 33 33 H 1.07997 * 119.97512 * 180.29482 * 18 17 16 34 34 H 0.96702 * 113.99547 * 359.97079 * 22 21 20 35 35 H 1.08001 * 120.18187 * 359.97438 * 25 24 23 36 36 H 1.07998 * 119.91613 * 180.02562 * 26 12 11 37 37 H 1.07994 * 120.08174 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3911 2.1038 -1.3953 5 1 1.4930 2.6221 0.7968 6 1 3.5861 1.4138 0.5988 7 6 2.0083 -1.2116 -0.0005 8 1 3.0509 -1.2332 0.2804 9 6 1.3516 -2.4055 -0.3682 10 6 0.2244 -2.3623 -1.2122 11 6 -0.4083 -3.5195 -1.5585 12 6 0.0646 -4.7449 -1.0884 13 7 -0.5828 -5.9218 -1.4507 14 6 -1.1586 -6.0279 -2.6647 15 8 -1.0316 -5.1330 -3.4782 16 6 -1.9426 -7.2292 -3.0064 17 6 -2.0833 -8.2621 -2.0700 18 6 -2.8103 -9.3740 -2.3742 19 6 -3.4126 -9.4947 -3.6307 20 7 -4.1736 -10.4563 -4.2144 21 6 -4.4867 -10.0696 -5.4239 22 8 -5.2376 -10.7806 -6.2932 23 8 -3.9544 -8.8624 -5.6763 24 6 -3.2721 -8.4651 -4.5774 25 6 -2.5396 -7.3373 -4.2638 26 6 1.1839 -4.7961 -0.2571 27 6 1.8236 -3.6467 0.1023 28 1 -0.4850 0.8400 0.0004 29 1 -0.1401 -1.4148 -1.5807 30 1 -1.2751 -3.4877 -2.2020 31 1 -0.6197 -6.6660 -0.8297 32 1 -1.6160 -8.1749 -1.1003 33 1 -2.9184 -10.1640 -1.6458 34 1 -5.5407 -11.6311 -5.9469 35 1 -2.4288 -6.5432 -4.9874 36 1 1.5446 -5.7483 0.1026 37 1 2.6901 -3.6879 0.7456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604326592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:58 Heat of formation + Delta-G solvation = -26.299922 kcal Electronic energy + Delta-G solvation = -24964.637420 eV Core-core repulsion = 21059.026540 eV Total energy + Delta-G solvation = -3905.610881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.50940 -41.47316 -39.65017 -39.13384 -38.36518 -36.27507 -35.74327 -34.77863 -31.97436 -31.61700 -31.27337 -30.21217 -27.03090 -25.21166 -24.85522 -23.36440 -23.19710 -22.74446 -21.51511 -20.11867 -19.55599 -19.23175 -19.01060 -18.43639 -18.24059 -17.13061 -16.99854 -16.19697 -16.04179 -15.76758 -15.69871 -15.14037 -14.99780 -14.89213 -14.74383 -14.44686 -13.99466 -13.85123 -13.67555 -13.61677 -13.25663 -12.90224 -12.79978 -12.73376 -12.40361 -12.18088 -11.79818 -11.70528 -11.49926 -11.22571 -10.92034 -10.67245 -10.08732 -9.48105 -9.44020 -8.84794 -8.59494 -6.26005 -0.76955 0.00568 0.43833 0.77753 1.06208 1.17064 1.39150 1.49053 1.53066 1.88610 2.12646 2.21343 2.40755 2.59621 2.78879 3.18713 3.61436 3.65756 3.75936 3.88508 3.92408 4.13796 4.46442 4.47830 4.51605 4.77582 4.80962 4.97467 5.04412 5.05323 5.12078 5.19800 5.27143 5.33014 5.43204 5.69246 5.85322 5.87958 6.07570 6.11577 6.34663 6.48172 6.66404 6.69980 6.93553 7.01017 7.32423 8.33424 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.035743 B = 0.002184 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.184688 B =12819.773062 C =13353.685094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.492 4.492 8 H 0.081 0.919 9 C 0.073 3.927 10 C -0.182 4.182 11 C -0.099 4.099 12 C 0.005 3.995 13 N -0.628 5.628 14 C 0.545 3.455 15 O -0.572 6.572 16 C -0.118 4.118 17 C -0.062 4.062 18 C -0.067 4.067 19 C 0.067 3.933 20 N -0.531 5.531 21 C 0.464 3.536 22 O -0.402 6.402 23 O -0.215 6.215 24 C -0.026 4.026 25 C -0.028 4.028 26 C -0.094 4.094 27 C -0.223 4.223 28 H 0.287 0.713 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.420 0.580 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.464 0.536 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 -21.404 -4.149 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.071 3.929 10 C -0.202 4.202 11 C -0.119 4.119 12 C -0.088 4.088 13 N -0.273 5.273 14 C 0.335 3.665 15 O -0.452 6.452 16 C -0.122 4.122 17 C -0.082 4.082 18 C -0.086 4.086 19 C -0.046 4.046 20 N -0.283 5.283 21 C 0.216 3.784 22 O -0.208 6.208 23 O -0.110 6.110 24 C -0.075 4.075 25 C -0.048 4.048 26 C -0.114 4.114 27 C -0.243 4.243 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.259 0.741 32 H 0.194 0.806 33 H 0.196 0.804 34 H 0.330 0.670 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.677 -20.793 -4.948 23.068 hybrid contribution -0.025 0.990 -0.381 1.061 sum -8.702 -19.802 -5.329 22.277 Atomic orbital electron populations 1.69907 1.09120 1.30516 1.35543 1.26820 0.95488 1.04755 0.91351 0.85177 0.79338 0.75949 0.79160 1.19222 1.19264 1.17694 1.19833 0.98365 0.92351 1.41556 0.90058 1.18027 0.91892 0.93733 0.89289 1.20862 1.00634 0.96546 1.02148 1.20470 0.99185 0.92335 0.99937 1.17166 0.98548 0.84870 1.08217 1.42639 1.53496 1.15630 1.15521 1.18409 0.79868 0.86599 0.81662 1.90797 1.61936 1.42641 1.49834 1.19436 1.02049 0.95759 0.94930 1.21248 0.96541 0.90729 0.99668 1.20257 0.95788 0.99353 0.93153 1.20063 0.98009 0.89783 0.96718 1.71196 1.22442 1.29414 1.05242 1.22589 0.88792 0.81336 0.85663 1.84697 1.62312 1.37233 1.36563 1.84361 1.56702 1.31677 1.38236 1.19726 1.02471 0.99451 0.85805 1.19766 0.93928 0.94365 0.96710 1.20415 0.93367 0.98533 0.99081 1.20829 1.04222 0.92445 1.06777 0.90225 0.88687 0.88992 0.74104 0.80561 0.80423 0.67017 0.84576 0.84228 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.31 10.97 21.82 0.24 -44.07 16 2 C 0.03 1.57 5.14 85.24 0.44 2.01 16 3 Si 0.98 38.79 29.59 68.60 2.03 40.82 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.49 -26.57 9.03 23.39 0.21 -26.36 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.07 3.98 5.57 -21.27 -0.12 3.86 16 10 C -0.18 -10.13 8.63 22.48 0.19 -9.93 16 11 C -0.10 -5.03 8.57 22.14 0.19 -4.84 16 12 C 0.01 0.23 6.29 38.60 0.24 0.47 16 13 N -0.63 -19.97 5.25 -306.02 -1.61 -21.58 16 14 C 0.55 18.62 7.48 86.68 0.65 19.27 16 15 O -0.57 -25.33 13.97 -4.05 -0.06 -25.39 16 16 C -0.12 -3.00 5.88 -20.06 -0.12 -3.12 16 17 C -0.06 -1.03 9.46 22.27 0.21 -0.82 16 18 C -0.07 -1.03 10.03 22.21 0.22 -0.81 16 19 C 0.07 1.40 7.23 39.49 0.29 1.69 16 20 N -0.53 -10.13 11.36 -422.41 -4.80 -14.93 16 21 C 0.46 8.35 9.54 130.40 1.24 9.60 16 22 O -0.40 -3.86 13.62 -61.49 -0.84 -4.69 16 23 O -0.21 -5.13 10.79 9.31 0.10 -5.03 16 24 C -0.03 -0.64 7.40 22.80 0.17 -0.47 16 25 C -0.03 -0.74 9.60 22.57 0.22 -0.53 16 26 C -0.09 -3.79 9.89 22.14 0.22 -3.57 16 27 C -0.22 -10.44 9.74 22.48 0.22 -10.22 16 28 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 29 H 0.10 5.63 6.19 -2.91 -0.02 5.61 16 30 H 0.09 4.77 6.38 -2.91 -0.02 4.75 16 31 H 0.42 8.95 6.82 -92.71 -0.63 8.32 16 32 H 0.18 1.65 6.38 -2.91 -0.02 1.63 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.46 -1.05 9.06 -74.06 -0.67 -1.72 16 35 H 0.14 3.95 7.64 -2.91 -0.02 3.93 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -75.53 329.19 -0.58 -76.10 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.12 Total: 22.53 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.47 Total: -23.77 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -6.17 Total: -80.58 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.79 Total: -35.11 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -75.53 -0.58 -76.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604326592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.805 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds