Wall clock time and date at job start Tue Mar 31 2020 14:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31400 * 1 3 3 Si 1.86800 * 119.99360 * 2 1 4 4 H 1.48504 * 109.46999 * 275.95374 * 3 2 1 5 5 H 1.48497 * 109.47484 * 35.95544 * 3 2 1 6 6 H 1.48504 * 109.46908 * 155.95924 * 3 2 1 7 7 C 1.38949 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 334.86860 * 7 2 1 9 9 N 1.36945 * 119.99777 * 154.86399 * 7 2 1 10 10 C 1.34784 * 119.99352 * 132.42452 * 9 7 2 11 11 O 1.21633 * 119.99297 * 176.35496 * 10 9 7 12 12 C 1.47351 * 120.00188 * 356.35680 * 10 9 7 13 13 C 1.40175 * 119.94556 * 334.01000 * 12 10 9 14 14 C 1.36260 * 120.38047 * 179.73321 * 13 12 10 15 15 C 1.39891 * 120.05390 * 0.52140 * 14 13 12 16 16 N 1.35797 * 133.51025 * 179.73357 * 15 14 13 17 17 C 1.30786 * 108.80146 * 180.02562 * 16 15 14 18 18 O 1.35097 * 124.92066 * 180.02562 * 17 16 15 19 19 O 1.34325 * 110.15879 * 359.97438 * 17 16 15 20 20 C 1.35313 * 108.12699 * 0.02562 * 19 17 16 21 21 C 1.38076 * 133.76031 * 180.02562 * 20 19 17 22 22 C 1.39697 * 120.00227 * 312.42971 * 9 7 2 23 23 C 1.38982 * 120.08148 * 315.65967 * 22 9 7 24 24 C 1.38072 * 119.92135 * 180.23357 * 23 22 9 25 25 C 1.38321 * 120.07603 * 359.47009 * 24 23 22 26 26 C 1.38308 * 120.15944 * 0.55163 * 25 24 23 27 27 C 1.38074 * 120.08159 * 359.70379 * 26 25 24 28 28 H 0.96997 * 120.00686 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.80862 * 359.97438 * 13 12 10 30 30 H 1.08001 * 119.97698 * 180.27521 * 14 13 12 31 31 H 0.96702 * 114.00369 * 359.95058 * 18 17 16 32 32 H 1.07999 * 120.18073 * 0.02562 * 21 20 19 33 33 H 1.08003 * 120.03917 * 359.95773 * 23 22 9 34 34 H 1.07996 * 119.95996 * 179.72771 * 24 23 22 35 35 H 1.07998 * 119.91631 * 180.25883 * 25 24 23 36 36 H 1.08008 * 119.95761 * 179.72069 * 26 25 24 37 37 H 1.08005 * 120.03751 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.3695 2.1191 -1.3926 5 1 1.5138 2.6131 0.8220 6 1 3.6027 1.4073 0.5704 7 6 2.0088 -1.2033 0.0005 8 1 1.5456 -2.0942 0.3981 9 7 3.2810 -1.2595 -0.5032 10 6 4.2563 -1.8726 0.1965 11 8 5.3702 -1.9809 -0.2797 12 6 3.9730 -2.4117 1.5383 13 6 2.9429 -1.8585 2.3115 14 6 2.6697 -2.3536 3.5512 15 6 3.4255 -3.4128 4.0647 16 7 3.3976 -4.0997 5.2359 17 6 4.3358 -5.0106 5.2127 18 8 4.5957 -5.8788 6.2146 19 8 5.0028 -4.9587 4.0479 20 6 4.4640 -3.9696 3.2980 21 6 4.7345 -3.4699 2.0395 22 6 3.5679 -0.6814 -1.7422 23 6 2.7072 -0.8732 -2.8164 24 6 2.9965 -0.3043 -4.0408 25 6 4.1356 0.4648 -4.1960 26 6 4.9947 0.6574 -3.1293 27 6 4.7145 0.0872 -1.9034 28 1 -0.4851 0.8400 -0.0004 29 1 2.3598 -1.0376 1.9207 30 1 1.8717 -1.9253 4.1395 31 1 4.0176 -5.7770 6.9831 32 1 5.5304 -3.8949 1.4461 33 1 1.8154 -1.4702 -2.6948 34 1 2.3304 -0.4565 -4.8771 35 1 4.3572 0.9120 -5.1537 36 1 5.8856 1.2549 -3.2553 37 1 5.3860 0.2378 -1.0710 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604517608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:45 Heat of formation + Delta-G solvation = 2.549323 kcal Electronic energy + Delta-G solvation = -26588.408389 eV Core-core repulsion = 22684.048506 eV Total energy + Delta-G solvation = -3904.359884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.41980 -41.78035 -39.75563 -39.17342 -38.23957 -36.93416 -35.64714 -34.18653 -31.88235 -31.74866 -31.49052 -29.84087 -27.22183 -25.50098 -24.60452 -23.59767 -23.25168 -22.94745 -21.38371 -20.17486 -19.78696 -19.45815 -18.54354 -18.36383 -17.70203 -17.23197 -16.94091 -16.31248 -16.14159 -15.86418 -15.52517 -15.20078 -15.00328 -14.80311 -14.76960 -14.58037 -14.37784 -14.16262 -13.84166 -13.53635 -13.50889 -13.04253 -12.87505 -12.52965 -12.47055 -12.09910 -12.06362 -11.97738 -11.70537 -11.19146 -10.84259 -10.45991 -9.91004 -9.77458 -9.39212 -9.04861 -8.63440 -6.27858 -0.64109 0.15998 0.45344 0.48629 0.55646 1.09674 1.23483 1.32171 1.41165 1.86639 2.17698 2.24705 2.49280 2.61041 2.81352 3.13489 3.28195 3.69897 3.85150 4.01462 4.08849 4.12634 4.17391 4.34551 4.37748 4.63244 4.67224 4.73195 4.76710 4.86862 4.90574 5.15830 5.19217 5.37911 5.41251 5.55201 5.59092 5.63185 5.66125 5.93043 5.99012 6.06830 6.30961 6.54087 6.80482 7.17592 7.55181 8.45465 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.004015 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.262270 B = 6972.806778 C = 7853.253888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.074 3.926 3 Si 0.883 3.117 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.415 5.415 10 C 0.524 3.476 11 O -0.588 6.588 12 C -0.107 4.107 13 C -0.059 4.059 14 C -0.089 4.089 15 C 0.065 3.935 16 N -0.533 5.533 17 C 0.460 3.540 18 O -0.400 6.400 19 O -0.210 6.210 20 C -0.027 4.027 21 C -0.032 4.032 22 C 0.132 3.868 23 C -0.139 4.139 24 C -0.109 4.109 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.155 4.155 28 H 0.286 0.714 29 H 0.170 0.830 30 H 0.158 0.842 31 H 0.463 0.537 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -2.897 4.478 6.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.482 4.482 8 H 0.112 0.888 9 N -0.128 5.128 10 C 0.317 3.683 11 O -0.473 6.473 12 C -0.110 4.110 13 C -0.078 4.078 14 C -0.108 4.108 15 C -0.047 4.047 16 N -0.285 5.285 17 C 0.212 3.788 18 O -0.206 6.206 19 O -0.105 6.105 20 C -0.076 4.076 21 C -0.052 4.052 22 C 0.039 3.961 23 C -0.159 4.159 24 C -0.127 4.127 25 C -0.159 4.159 26 C -0.131 4.131 27 C -0.176 4.176 28 H 0.097 0.903 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.328 0.672 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.680 -3.114 4.510 7.207 hybrid contribution 0.249 0.449 0.225 0.561 sum 4.930 -2.665 4.735 7.337 Atomic orbital electron populations 1.69813 1.07038 1.29731 1.42255 1.25547 0.95012 0.99569 0.93508 0.86541 0.80452 0.82505 0.79783 1.19173 1.19409 1.19213 1.18744 0.88219 0.97034 1.44182 0.88753 1.41263 1.09030 1.48901 1.13603 1.18663 0.83616 0.80869 0.85102 1.90665 1.23076 1.62264 1.71252 1.19445 0.98715 0.98115 0.94746 1.22126 0.93786 1.00049 0.91821 1.20179 1.00379 0.94859 0.95379 1.19848 0.96592 0.98189 0.90112 1.71120 1.23166 1.11160 1.23036 1.22510 0.84758 0.88352 0.83198 1.84672 1.60737 1.49207 1.25936 1.84315 1.52983 1.48275 1.24897 1.19605 0.99191 0.93126 0.95628 1.19712 0.99735 0.95005 0.90736 1.18353 0.95723 0.95664 0.86345 1.21181 1.00392 1.02081 0.92292 1.21345 0.97974 0.96947 0.96473 1.21447 0.94574 1.00091 0.99810 1.21289 1.00523 0.99417 0.91886 1.21151 0.97796 0.99254 0.99382 0.90327 0.81323 0.82467 0.67185 0.83890 0.86427 0.83098 0.82429 0.83453 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.63 13.96 21.66 0.30 -42.33 16 2 C 0.07 3.59 4.61 84.93 0.39 3.98 16 3 Si 0.88 39.56 25.96 68.60 1.78 41.34 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.36 -17.19 5.40 84.07 0.45 -16.74 16 8 H 0.09 4.83 7.15 -2.91 -0.02 4.80 16 9 N -0.42 -19.72 2.17 -462.40 -1.00 -20.73 16 10 C 0.52 24.66 7.16 86.64 0.62 25.28 16 11 O -0.59 -29.32 15.01 -4.14 -0.06 -29.39 16 12 C -0.11 -4.44 5.61 -20.06 -0.11 -4.56 16 13 C -0.06 -2.30 7.94 22.28 0.18 -2.12 16 14 C -0.09 -3.03 10.03 22.21 0.22 -2.81 16 15 C 0.06 2.19 7.23 39.50 0.29 2.47 16 16 N -0.53 -15.51 11.36 -422.39 -4.80 -20.31 16 17 C 0.46 11.78 9.54 130.40 1.24 13.02 16 18 O -0.40 -6.17 13.62 -61.45 -0.84 -7.00 16 19 O -0.21 -6.56 10.79 9.31 0.10 -6.46 16 20 C -0.03 -0.94 7.40 22.80 0.17 -0.77 16 21 C -0.03 -1.20 9.60 22.58 0.22 -0.98 16 22 C 0.13 5.97 3.26 38.24 0.12 6.10 16 23 C -0.14 -5.78 9.27 22.41 0.21 -5.57 16 24 C -0.11 -3.60 10.04 22.25 0.22 -3.37 16 25 C -0.14 -4.21 10.04 22.31 0.22 -3.98 16 26 C -0.11 -3.81 10.04 22.25 0.22 -3.59 16 27 C -0.16 -6.59 7.65 22.41 0.17 -6.41 16 28 H 0.29 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.17 7.17 4.77 -2.91 -0.01 7.16 16 30 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.46 1.70 9.06 -74.06 -0.67 1.03 16 32 H 0.14 5.16 7.85 -2.91 -0.02 5.14 16 33 H 0.12 5.09 7.78 -2.91 -0.02 5.07 16 34 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.10 4.64 7.19 -2.91 -0.02 4.62 16 Total: -1.00 -63.58 323.34 0.81 -62.77 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.48 Total: 22.16 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.84 Total: -0.05 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -5.50 Total: -83.37 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.80 Total: -42.85 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.78 Total: 41.34 kcal Total: -63.58 0.81 -62.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604517608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds