Wall clock time and date at job start Tue Mar 31 2020 13:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31592 * 122.23188 * 2 1 4 4 C 1.29947 * 117.13733 * 179.97438 * 3 2 1 5 5 N 1.38895 * 125.36192 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99695 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00601 * 359.72962 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 H 1.08995 * 115.55516 * 325.38391 * 8 6 5 10 10 C 1.53121 * 117.51291 * 111.11769 * 8 6 5 11 11 C 1.52460 * 117.51587 * 179.58208 * 8 6 5 12 12 C 1.53251 * 128.58667 * 134.94812 * 11 8 6 13 13 C 1.53882 * 86.88542 * 194.88650 * 12 11 8 14 14 C 1.53256 * 128.58496 * 10.14904 * 11 8 6 15 15 S 1.76135 * 109.27131 * 0.26170 * 4 3 2 16 16 C 1.34656 * 122.23123 * 179.97438 * 2 1 3 17 17 S 1.76203 * 125.92765 * 359.97438 * 16 2 1 18 18 C 1.76199 * 99.99986 * 179.97438 * 17 16 2 19 19 H 1.08001 * 120.00156 * 359.97438 * 18 17 16 20 20 C 1.38428 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31806 * 120.00224 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46943 * 89.99751 * 22 20 18 24 24 H 1.48493 * 109.46936 * 210.00121 * 22 20 18 25 25 H 1.48507 * 109.46789 * 329.99756 * 22 20 18 26 26 H 1.08998 * 109.46792 * 90.02908 * 1 2 3 27 27 H 1.08996 * 109.47411 * 210.02640 * 1 2 3 28 28 H 1.09005 * 109.47142 * 330.02728 * 1 2 3 29 29 H 0.96998 * 119.99779 * 0.02562 * 5 4 3 30 30 H 1.09005 * 117.50941 * 214.89825 * 10 8 6 31 31 H 1.08996 * 117.51453 * 0.02562 * 10 8 6 32 32 H 1.08995 * 113.64868 * 309.38924 * 12 11 8 33 33 H 1.09005 * 113.64177 * 80.38857 * 12 11 8 34 34 H 1.08996 * 113.59367 * 270.39722 * 13 12 11 35 35 H 1.09000 * 113.58886 * 139.56844 * 13 12 11 36 36 H 1.08999 * 113.64800 * 279.61137 * 14 11 8 37 37 H 1.09007 * 113.64700 * 50.61317 * 14 11 8 38 38 H 0.96994 * 120.00366 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0546 0.0001 6 6 5.7298 1.8099 0.0012 7 8 6.1356 0.6669 0.0076 8 6 6.7077 2.9566 0.0014 9 1 6.3975 3.8392 -0.5579 10 6 7.5380 3.1779 1.2687 11 6 8.1935 2.6151 0.0125 12 6 9.3200 3.2213 -0.8314 13 6 10.1782 2.0203 -0.3968 14 6 8.8622 1.2506 -0.1872 15 16 3.9346 -0.7100 -0.0065 16 6 2.2252 -1.1391 0.0005 17 16 1.5696 -2.7746 0.0019 18 6 3.0665 -3.7042 0.0012 19 1 4.0187 -3.1945 -0.0003 20 6 3.0220 -5.0877 0.0025 21 7 1.8600 -5.7098 0.0047 22 14 4.6090 -6.0732 0.0024 23 1 5.0303 -6.3330 1.4025 24 1 4.3894 -7.3650 -0.6963 25 1 5.6687 -5.3049 -0.6990 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8903 0.5134 29 1 4.0799 2.9687 -0.0003 30 1 7.7745 4.2062 1.5425 31 1 7.3771 2.4940 2.1020 32 1 9.1041 3.2407 -1.8996 33 1 9.6829 4.1774 -0.4540 34 1 10.7344 2.1922 0.5247 35 1 10.7979 1.6148 -1.1966 36 1 8.8582 0.6268 0.7066 37 1 8.5188 0.7214 -1.0761 38 1 1.8288 -6.6793 0.0053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610738226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:43 Heat of formation + Delta-G solvation = 47.100328 kcal Electronic energy + Delta-G solvation = -21907.191829 eV Core-core repulsion = 18582.960644 eV Total energy + Delta-G solvation = -3324.231185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66257 -39.04776 -38.23733 -34.66692 -33.91735 -32.80930 -30.48792 -27.11396 -25.89128 -25.76964 -25.41762 -23.30176 -22.53833 -20.90870 -19.61478 -18.59492 -17.90009 -17.62786 -16.79252 -15.88202 -15.51667 -15.40170 -15.18187 -15.09245 -14.85653 -14.02968 -13.88348 -13.18343 -13.01451 -12.66569 -12.59381 -12.31892 -12.03416 -11.87447 -11.76885 -11.66423 -11.37416 -11.25656 -11.06520 -10.80962 -10.54522 -10.46930 -10.32259 -10.25160 -10.00718 -9.75239 -9.51105 -9.04489 -8.72588 -8.63768 -7.77842 -6.58795 -6.48308 -4.26380 1.40220 1.90962 2.38495 2.55946 2.86952 3.09313 3.10714 3.17927 3.37061 3.43512 3.68623 3.99014 4.12733 4.35468 4.47215 4.54456 4.69090 4.83768 4.84098 5.05282 5.15089 5.25426 5.29334 5.39267 5.48307 5.62610 5.68337 5.69275 5.99448 5.99743 6.11092 6.17551 6.24442 6.24700 6.47640 6.52132 6.99827 7.23424 7.34429 8.04782 8.05614 8.54313 8.89802 10.47074 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003951 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.740734 B = 7085.823543 C = 9117.334224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.189 3.811 5 N -0.613 5.613 6 C 0.535 3.465 7 O -0.500 6.500 8 C -0.174 4.174 9 H 0.127 0.873 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.098 4.098 13 C -0.142 4.142 14 C -0.085 4.085 15 S 0.200 5.800 16 C -0.252 4.252 17 S 0.147 5.853 18 C -0.556 4.556 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.414 0.586 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.612 17.174 0.110 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.198 5.198 4 C -0.182 4.182 5 N -0.262 5.262 6 C 0.320 3.680 7 O -0.374 6.374 8 C -0.195 4.195 9 H 0.145 0.855 10 C -0.157 4.157 11 C -0.123 4.123 12 C -0.135 4.135 13 C -0.179 4.179 14 C -0.123 4.123 15 S 0.444 5.556 16 C -0.489 4.489 17 S 0.397 5.603 18 C -0.705 4.705 19 H 0.106 0.894 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.748 3.252 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.251 0.749 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.390 15.535 0.100 18.689 hybrid contribution 0.904 0.520 -0.026 1.044 sum 11.295 16.055 0.074 19.630 Atomic orbital electron populations 1.20116 0.88085 1.02093 1.01772 1.19033 0.96688 0.84608 1.11979 1.65818 1.02858 1.32386 1.18782 1.23798 0.89866 0.92962 1.11532 1.42369 1.04350 1.08013 1.71439 1.19853 0.81318 0.90281 0.76507 1.90695 1.76973 1.22200 1.47508 1.21982 0.92566 0.99145 1.05807 0.85479 1.22851 0.99600 1.02609 0.90638 1.22352 0.89811 0.99988 1.00185 1.22514 0.93770 0.97947 0.99269 1.22807 0.96553 0.97017 1.01550 1.22380 0.93205 0.93649 1.03037 1.85824 1.01739 0.95453 1.72585 1.28765 1.01335 1.06697 1.12087 1.83063 1.11033 0.84438 1.81738 1.23258 0.93582 0.94038 1.59576 0.89357 1.25018 0.98236 0.96656 0.92945 1.70010 1.24392 1.10299 1.44968 0.86043 0.81306 0.78789 0.79013 1.19621 1.20266 1.18904 0.91893 0.91051 0.91955 0.74871 0.87357 0.87760 0.89509 0.91220 0.90146 0.91172 0.90980 0.89128 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.01 0.36 -0.73 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.15 16 3 N -0.48 -9.71 10.55 -9.78 -0.10 -9.82 16 4 C 0.19 3.69 8.40 -87.19 -0.73 2.96 16 5 N -0.61 -9.10 5.40 -11.78 -0.06 -9.16 16 6 C 0.53 7.71 7.58 -10.98 -0.08 7.62 16 7 O -0.50 -9.02 12.66 5.55 0.07 -8.95 16 8 C -0.17 -1.72 6.19 -91.98 -0.57 -2.29 16 9 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 10 C -0.12 -1.02 10.24 -26.94 -0.28 -1.30 16 11 C -0.12 -1.18 2.88 -154.80 -0.45 -1.63 16 12 C -0.10 -0.75 8.10 -26.14 -0.21 -0.96 16 13 C -0.14 -1.17 8.08 -25.81 -0.21 -1.37 16 14 C -0.09 -0.95 6.47 -26.14 -0.17 -1.12 16 15 S 0.20 4.46 18.35 -107.50 -1.97 2.49 16 16 C -0.25 -5.90 6.67 29.46 0.20 -5.70 16 17 S 0.15 3.73 20.74 -107.50 -2.23 1.50 16 18 C -0.56 -15.28 9.26 30.80 0.29 -14.99 16 19 H 0.09 2.41 5.97 -52.49 -0.31 2.10 16 20 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 21 N -0.86 -23.96 13.22 55.47 0.73 -23.22 16 22 Si 0.92 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.41 4.70 8.82 -40.82 -0.36 4.34 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 38 H 0.28 7.12 8.32 -40.82 -0.34 6.78 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -31.44 347.84 -10.70 -42.13 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.84 Total: 1.53 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.51 Total: -17.54 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.57 Total: -42.20 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -4.20 Total: 3.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.44 -10.70 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.234 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds