Wall clock time and date at job start Tue Mar 31 2020 13:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31592 * 122.23188 * 2 1 4 4 C 1.29947 * 117.13733 * 179.97438 * 3 2 1 5 5 N 1.38895 * 125.36192 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99695 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00601 * 359.72962 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 H 1.08995 * 115.55516 * 325.38391 * 8 6 5 10 10 C 1.53121 * 117.51291 * 111.11769 * 8 6 5 11 11 C 1.52460 * 117.51587 * 179.58208 * 8 6 5 12 12 C 1.53251 * 128.58667 * 134.94812 * 11 8 6 13 13 C 1.53882 * 86.88542 * 194.88650 * 12 11 8 14 14 C 1.53256 * 128.58496 * 10.14904 * 11 8 6 15 15 S 1.76135 * 109.27131 * 0.26170 * 4 3 2 16 16 C 1.34656 * 122.23123 * 179.97438 * 2 1 3 17 17 S 1.76203 * 125.92765 * 359.97438 * 16 2 1 18 18 C 1.76199 * 99.99986 * 179.97438 * 17 16 2 19 19 H 1.08001 * 120.00156 * 359.97438 * 18 17 16 20 20 C 1.38428 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31806 * 120.00224 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46943 * 89.99751 * 22 20 18 24 24 H 1.48493 * 109.46936 * 210.00121 * 22 20 18 25 25 H 1.48507 * 109.46789 * 329.99756 * 22 20 18 26 26 H 1.08998 * 109.46792 * 90.02908 * 1 2 3 27 27 H 1.08996 * 109.47411 * 210.02640 * 1 2 3 28 28 H 1.09005 * 109.47142 * 330.02728 * 1 2 3 29 29 H 0.96998 * 119.99779 * 0.02562 * 5 4 3 30 30 H 1.09005 * 117.50941 * 214.89825 * 10 8 6 31 31 H 1.08996 * 117.51453 * 0.02562 * 10 8 6 32 32 H 1.08995 * 113.64868 * 309.38924 * 12 11 8 33 33 H 1.09005 * 113.64177 * 80.38857 * 12 11 8 34 34 H 1.08996 * 113.59367 * 270.39722 * 13 12 11 35 35 H 1.09000 * 113.58886 * 139.56844 * 13 12 11 36 36 H 1.08999 * 113.64800 * 279.61137 * 14 11 8 37 37 H 1.09007 * 113.64700 * 50.61317 * 14 11 8 38 38 H 0.96994 * 120.00366 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0546 0.0001 6 6 5.7298 1.8099 0.0012 7 8 6.1356 0.6669 0.0076 8 6 6.7077 2.9566 0.0014 9 1 6.3975 3.8392 -0.5579 10 6 7.5380 3.1779 1.2687 11 6 8.1935 2.6151 0.0125 12 6 9.3200 3.2213 -0.8314 13 6 10.1782 2.0203 -0.3968 14 6 8.8622 1.2506 -0.1872 15 16 3.9346 -0.7100 -0.0065 16 6 2.2252 -1.1391 0.0005 17 16 1.5696 -2.7746 0.0019 18 6 3.0665 -3.7042 0.0012 19 1 4.0187 -3.1945 -0.0003 20 6 3.0220 -5.0877 0.0025 21 7 1.8600 -5.7098 0.0047 22 14 4.6090 -6.0732 0.0024 23 1 5.0303 -6.3330 1.4025 24 1 4.3894 -7.3650 -0.6963 25 1 5.6687 -5.3049 -0.6990 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8903 0.5134 29 1 4.0799 2.9687 -0.0003 30 1 7.7745 4.2062 1.5425 31 1 7.3771 2.4940 2.1020 32 1 9.1041 3.2407 -1.8996 33 1 9.6829 4.1774 -0.4540 34 1 10.7344 2.1922 0.5247 35 1 10.7979 1.6148 -1.1966 36 1 8.8582 0.6268 0.7066 37 1 8.5188 0.7214 -1.0761 38 1 1.8288 -6.6793 0.0053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610738226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:42 Heat of formation + Delta-G solvation = 28.735405 kcal Electronic energy + Delta-G solvation = -21907.988191 eV Core-core repulsion = 18582.960644 eV Total energy + Delta-G solvation = -3325.027547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76507 -40.41882 -39.48518 -36.08954 -34.83073 -34.70354 -32.03467 -28.81296 -27.73775 -26.78711 -26.49137 -24.03187 -23.80684 -22.30486 -21.07209 -19.88832 -19.25413 -19.01408 -18.15108 -17.44981 -17.08821 -16.77724 -16.37054 -16.09023 -16.00443 -15.58147 -15.34361 -14.94747 -14.39959 -13.94246 -13.57083 -13.43255 -13.30055 -13.25655 -13.08917 -13.03116 -12.89593 -12.47200 -12.35148 -12.31254 -12.12494 -12.05229 -11.39737 -11.35064 -11.10667 -11.04518 -10.79621 -10.69716 -10.48501 -10.47730 -9.53413 -8.58940 -8.37673 -6.31224 -0.24394 0.21030 0.82067 1.13863 1.25254 1.32415 1.38930 1.49350 1.65204 1.98405 2.13206 2.70575 2.80175 3.08257 3.25392 3.60425 3.65577 3.76877 3.84652 3.95840 4.01052 4.42516 4.49978 4.59327 4.69330 4.79720 4.83611 4.86575 4.90082 4.95425 5.00992 5.06438 5.10624 5.15777 5.28103 5.37868 5.46737 5.51846 5.97867 6.00922 6.80682 6.85791 6.87426 8.48994 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003951 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.740734 B = 7085.823543 C = 9117.334224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.484 5.484 4 C 0.228 3.772 5 N -0.601 5.601 6 C 0.531 3.469 7 O -0.536 6.536 8 C -0.174 4.174 9 H 0.165 0.835 10 C -0.102 4.102 11 C -0.133 4.133 12 C -0.083 4.083 13 C -0.134 4.134 14 C -0.103 4.103 15 S 0.156 5.844 16 C -0.283 4.283 17 S 0.099 5.901 18 C -0.577 4.577 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.896 5.896 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.262 1.262 25 H -0.269 1.269 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.436 0.564 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.181 20.753 0.146 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.206 5.206 4 C -0.145 4.145 5 N -0.253 5.253 6 C 0.319 3.681 7 O -0.411 6.411 8 C -0.195 4.195 9 H 0.183 0.817 10 C -0.139 4.139 11 C -0.134 4.134 12 C -0.120 4.120 13 C -0.171 4.171 14 C -0.141 4.141 15 S 0.400 5.600 16 C -0.518 4.518 17 S 0.346 5.654 18 C -0.725 4.725 19 H 0.097 0.903 20 C -0.171 4.171 21 N -0.530 5.530 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.187 1.187 25 H -0.193 1.193 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.277 0.723 30 H 0.164 0.836 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.971 19.184 0.139 22.613 hybrid contribution 0.518 -0.291 -0.024 0.595 sum 12.489 18.893 0.115 22.648 Atomic orbital electron populations 1.20246 0.85643 1.03150 1.03100 1.19715 0.98440 0.84171 1.08083 1.66037 1.02695 1.31342 1.20574 1.24162 0.90226 0.93079 1.07017 1.42586 1.03979 1.07865 1.70866 1.20922 0.81391 0.91171 0.74602 1.90703 1.77348 1.24422 1.48674 1.22106 0.91263 0.98244 1.07856 0.81730 1.22998 0.97424 1.04184 0.89306 1.22538 0.89969 0.99183 1.01691 1.22476 0.91914 0.98501 0.99122 1.22800 0.95349 0.96684 1.02295 1.22380 0.96280 0.94503 1.00926 1.86036 1.02286 0.98215 1.73424 1.28586 1.01688 1.06026 1.15548 1.82858 1.11177 0.86205 1.85120 1.23441 0.93850 0.94874 1.60321 0.90284 1.25867 1.01369 0.97380 0.92469 1.70085 1.26106 1.10751 1.46070 0.85148 0.77244 0.77675 0.79366 1.18771 1.18664 1.19327 0.90310 0.91363 0.89458 0.72283 0.83563 0.89327 0.89217 0.88670 0.89059 0.90735 0.93295 0.91683 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.24 0.71 -1.42 16 2 C 0.04 1.57 6.73 41.77 0.28 1.85 16 3 N -0.48 -18.95 10.55 -184.87 -1.95 -20.90 16 4 C 0.23 8.63 8.40 179.15 1.50 10.13 16 5 N -0.60 -16.46 5.40 -309.57 -1.67 -18.14 16 6 C 0.53 14.43 7.58 87.66 0.66 15.10 16 7 O -0.54 -19.48 12.66 -3.06 -0.04 -19.51 16 8 C -0.17 -2.86 6.19 -11.68 -0.07 -2.93 16 9 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 10 C -0.10 -1.37 10.24 30.46 0.31 -1.06 16 11 C -0.13 -2.22 2.88 -52.37 -0.15 -2.37 16 12 C -0.08 -0.97 8.10 30.98 0.25 -0.72 16 13 C -0.13 -1.94 8.08 31.19 0.25 -1.69 16 14 C -0.10 -2.28 6.47 30.98 0.20 -2.08 16 15 S 0.16 7.12 18.35 -56.49 -1.04 6.09 16 16 C -0.28 -13.59 6.67 67.00 0.45 -13.14 16 17 S 0.10 5.26 20.74 -56.49 -1.17 4.09 16 18 C -0.58 -33.17 9.26 67.87 0.63 -32.54 16 19 H 0.08 4.56 5.97 -2.91 -0.02 4.54 16 20 C 0.04 2.02 5.49 84.74 0.47 2.49 16 21 N -0.90 -51.28 13.22 21.59 0.29 -51.00 16 22 Si 0.98 43.78 29.55 68.60 2.03 45.81 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.41 7.37 -2.39 -0.02 2.39 16 28 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.44 8.31 8.82 -92.71 -0.82 7.49 16 30 H 0.15 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.73 8.05 -2.38 -0.02 1.71 16 38 H 0.28 14.85 8.32 -92.71 -0.77 14.08 16 Total: -1.00 -72.00 347.84 2.22 -69.78 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.28 Total: 12.15 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 5.50 Total: -28.37 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -3.34 Total: -90.03 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 12.39 SS G_CDS: -2.21 Total: 10.18 kcal Total: -72.00 2.22 -69.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.515 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds