Wall clock time and date at job start Tue Mar 31 2020 13:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31591 * 122.23152 * 2 1 4 4 C 1.29945 * 117.13459 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.35991 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00253 * 180.02562 * 5 4 3 7 7 O 1.21292 * 119.99460 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00357 * 180.02562 * 6 5 4 9 9 H 1.09002 * 115.56025 * 34.41582 * 8 6 5 10 10 C 1.53127 * 117.51226 * 248.67961 * 8 6 5 11 11 C 1.52457 * 59.85507 * 252.50955 * 10 8 6 12 12 C 1.53260 * 128.58153 * 117.60045 * 11 10 8 13 13 C 1.53891 * 86.88190 * 114.94319 * 12 11 10 14 14 C 1.53254 * 128.58674 * 242.39211 * 11 10 8 15 15 S 1.76134 * 109.27482 * 0.26285 * 4 3 2 16 16 C 1.34655 * 122.22774 * 179.97438 * 2 1 3 17 17 S 1.76203 * 125.93490 * 0.02562 * 16 2 1 18 18 C 1.76194 * 100.00165 * 179.97438 * 17 16 2 19 19 H 1.08000 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31813 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46868 * 60.00376 * 22 20 18 24 24 H 1.48508 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47208 * 300.00208 * 22 20 18 26 26 H 1.09002 * 109.46932 * 90.02894 * 1 2 3 27 27 H 1.09006 * 109.47342 * 210.02856 * 1 2 3 28 28 H 1.08999 * 109.47260 * 330.02426 * 1 2 3 29 29 H 0.96996 * 120.00434 * 0.02562 * 5 4 3 30 30 H 1.09000 * 117.50768 * 359.96425 * 10 8 6 31 31 H 1.09001 * 117.51049 * 145.06235 * 10 8 6 32 32 H 1.08997 * 113.64865 * 229.43900 * 12 11 10 33 33 H 1.09000 * 113.64351 * 0.44768 * 12 11 10 34 34 H 1.08999 * 113.58704 * 270.38851 * 13 12 11 35 35 H 1.09005 * 113.58920 * 139.57529 * 13 12 11 36 36 H 1.08998 * 113.64435 * 359.56373 * 14 11 10 37 37 H 1.09005 * 113.64495 * 130.47144 * 14 11 10 38 38 H 0.96996 * 120.00264 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0002 7 8 6.1355 0.6669 0.0002 8 6 6.7077 2.9566 0.0003 9 1 6.3956 3.8408 0.5561 10 6 7.5425 3.1744 -1.2648 11 6 8.1937 2.6160 -0.0045 12 6 8.8625 1.2525 0.2020 13 6 10.1773 2.0235 0.4139 14 6 9.3169 3.2255 0.8416 15 16 3.9346 -0.7100 -0.0065 16 6 2.2251 -1.1391 0.0005 17 16 1.5697 -2.7747 0.0006 18 6 3.0665 -3.7042 0.0006 19 1 4.0187 -3.1945 0.0009 20 6 3.0221 -5.0878 0.0012 21 7 1.8600 -5.7099 0.0023 22 14 4.6090 -6.0732 0.0004 23 1 5.3996 -5.7392 1.2123 24 1 4.2909 -7.5238 0.0019 25 1 5.3979 -5.7401 -1.2127 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.0800 2.9686 -0.0003 30 1 7.3846 2.4879 -2.0965 31 1 7.7794 4.2019 -1.5409 32 1 8.5163 0.7259 1.0913 33 1 8.8620 0.6259 -0.6899 34 1 10.7367 2.1929 -0.5061 35 1 10.7945 1.6210 1.2172 36 1 9.6806 4.1805 0.4625 37 1 9.0964 3.2495 1.9088 38 1 1.8289 -6.6793 0.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610738227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:45 Heat of formation + Delta-G solvation = 47.109334 kcal Electronic energy + Delta-G solvation = -21905.883073 eV Core-core repulsion = 18581.652279 eV Total energy + Delta-G solvation = -3324.230794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66182 -39.04788 -38.23751 -34.66646 -33.91756 -32.80796 -30.48769 -27.11350 -25.89257 -25.76847 -25.41828 -23.30248 -22.53814 -20.90890 -19.61498 -18.59563 -17.89973 -17.62837 -16.79319 -15.88082 -15.51592 -15.40161 -15.18024 -15.08980 -14.86255 -14.02302 -13.88858 -13.18373 -13.01511 -12.66370 -12.59496 -12.31941 -12.03287 -11.87507 -11.76933 -11.66436 -11.38679 -11.23919 -11.06259 -10.81530 -10.54321 -10.47123 -10.32385 -10.26617 -10.00840 -9.75441 -9.50126 -9.04682 -8.72415 -8.64143 -7.77854 -6.58613 -6.48316 -4.26300 1.40217 1.90944 2.38416 2.55868 2.86999 3.09235 3.13096 3.15966 3.36342 3.43553 3.68550 3.99193 4.12661 4.35417 4.47155 4.54378 4.68999 4.83826 4.84116 5.05259 5.14993 5.25472 5.29269 5.39267 5.48269 5.62512 5.68246 5.69221 5.99431 5.99695 6.10981 6.17574 6.24412 6.24665 6.47630 6.52159 6.99831 7.23391 7.34221 8.04745 8.05343 8.54335 8.89761 10.47207 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003950 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.482920 B = 7087.617487 C = 9118.161630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.189 3.811 5 N -0.613 5.613 6 C 0.535 3.465 7 O -0.500 6.500 8 C -0.174 4.174 9 H 0.127 0.873 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.086 4.086 13 C -0.142 4.142 14 C -0.098 4.098 15 S 0.200 5.800 16 C -0.252 4.252 17 S 0.148 5.852 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.083 3.917 21 N -0.864 5.864 22 Si 0.924 3.076 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.414 0.586 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 17.161 -0.100 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.198 5.198 4 C -0.182 4.182 5 N -0.262 5.262 6 C 0.320 3.680 7 O -0.374 6.374 8 C -0.195 4.195 9 H 0.145 0.855 10 C -0.157 4.157 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.179 4.179 14 C -0.135 4.135 15 S 0.444 5.556 16 C -0.489 4.489 17 S 0.398 5.602 18 C -0.705 4.705 19 H 0.106 0.894 20 C -0.128 4.128 21 N -0.497 5.497 22 Si 0.749 3.251 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.251 0.749 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.382 15.518 -0.104 18.671 hybrid contribution 0.913 0.530 0.029 1.056 sum 11.295 16.048 -0.076 19.625 Atomic orbital electron populations 1.20116 0.88086 1.02093 1.01770 1.19031 0.96687 0.84608 1.11992 1.65818 1.02856 1.32383 1.18777 1.23793 0.89864 0.92953 1.11545 1.42370 1.04350 1.08012 1.71442 1.19853 0.81317 0.90278 0.76505 1.90694 1.76982 1.22193 1.47511 1.21981 0.92522 0.99137 1.05861 0.85479 1.22850 0.99589 1.02639 0.90627 1.22352 0.89839 1.00000 1.00140 1.22380 0.93218 0.93659 1.03016 1.22806 0.96548 0.97000 1.01564 1.22514 0.93793 0.97929 0.99264 1.85815 1.01755 0.95470 1.72599 1.28766 1.01330 1.06700 1.12086 1.83057 1.11001 0.84421 1.81718 1.23217 0.93571 0.94044 1.59693 0.89413 1.25017 0.98243 0.96645 0.92933 1.70005 1.24425 1.10370 1.44884 0.86090 0.81215 0.78103 0.79698 1.19222 1.20360 1.19219 0.91892 0.91053 0.91957 0.74875 0.87760 0.87360 0.89124 0.90980 0.90144 0.91171 0.91229 0.89508 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.01 0.36 -0.73 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.16 16 3 N -0.48 -9.71 10.55 -9.79 -0.10 -9.82 16 4 C 0.19 3.69 8.40 -87.19 -0.73 2.96 16 5 N -0.61 -9.10 5.40 -11.78 -0.06 -9.16 16 6 C 0.53 7.70 7.58 -10.98 -0.08 7.62 16 7 O -0.50 -9.01 12.66 5.55 0.07 -8.94 16 8 C -0.17 -1.72 6.19 -91.98 -0.57 -2.29 16 9 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 10 C -0.12 -1.02 10.24 -26.94 -0.28 -1.30 16 11 C -0.12 -1.18 2.88 -154.80 -0.45 -1.63 16 12 C -0.09 -0.95 6.47 -26.13 -0.17 -1.11 16 13 C -0.14 -1.16 8.08 -25.81 -0.21 -1.37 16 14 C -0.10 -0.75 8.10 -26.14 -0.21 -0.96 16 15 S 0.20 4.45 18.35 -107.50 -1.97 2.47 16 16 C -0.25 -5.90 6.67 29.46 0.20 -5.70 16 17 S 0.15 3.75 20.74 -107.50 -2.23 1.52 16 18 C -0.56 -15.30 9.26 30.80 0.29 -15.02 16 19 H 0.09 2.39 5.97 -52.49 -0.31 2.08 16 20 C 0.08 2.22 5.49 -17.49 -0.10 2.13 16 21 N -0.86 -23.97 13.22 55.47 0.73 -23.24 16 22 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.26 7.38 -51.93 -0.38 0.88 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.41 4.70 8.82 -40.82 -0.36 4.34 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.28 7.15 8.32 -40.82 -0.34 6.81 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -31.41 347.86 -10.70 -42.11 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.84 Total: 1.56 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.51 Total: -17.56 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.57 Total: -42.22 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -4.20 Total: 4.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.41 -10.70 -42.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.215 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds