Wall clock time and date at job start Tue Mar 31 2020 13:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31591 * 122.23152 * 2 1 4 4 C 1.29945 * 117.13459 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.35991 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00253 * 180.02562 * 5 4 3 7 7 O 1.21292 * 119.99460 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00357 * 180.02562 * 6 5 4 9 9 H 1.09002 * 115.56025 * 34.41582 * 8 6 5 10 10 C 1.53127 * 117.51226 * 248.67961 * 8 6 5 11 11 C 1.52457 * 59.85507 * 252.50955 * 10 8 6 12 12 C 1.53260 * 128.58153 * 117.60045 * 11 10 8 13 13 C 1.53891 * 86.88190 * 114.94319 * 12 11 10 14 14 C 1.53254 * 128.58674 * 242.39211 * 11 10 8 15 15 S 1.76134 * 109.27482 * 0.26285 * 4 3 2 16 16 C 1.34655 * 122.22774 * 179.97438 * 2 1 3 17 17 S 1.76203 * 125.93490 * 0.02562 * 16 2 1 18 18 C 1.76194 * 100.00165 * 179.97438 * 17 16 2 19 19 H 1.08000 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31813 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46868 * 60.00376 * 22 20 18 24 24 H 1.48508 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47208 * 300.00208 * 22 20 18 26 26 H 1.09002 * 109.46932 * 90.02894 * 1 2 3 27 27 H 1.09006 * 109.47342 * 210.02856 * 1 2 3 28 28 H 1.08999 * 109.47260 * 330.02426 * 1 2 3 29 29 H 0.96996 * 120.00434 * 0.02562 * 5 4 3 30 30 H 1.09000 * 117.50768 * 359.96425 * 10 8 6 31 31 H 1.09001 * 117.51049 * 145.06235 * 10 8 6 32 32 H 1.08997 * 113.64865 * 229.43900 * 12 11 10 33 33 H 1.09000 * 113.64351 * 0.44768 * 12 11 10 34 34 H 1.08999 * 113.58704 * 270.38851 * 13 12 11 35 35 H 1.09005 * 113.58920 * 139.57529 * 13 12 11 36 36 H 1.08998 * 113.64435 * 359.56373 * 14 11 10 37 37 H 1.09005 * 113.64495 * 130.47144 * 14 11 10 38 38 H 0.96996 * 120.00264 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0002 7 8 6.1355 0.6669 0.0002 8 6 6.7077 2.9566 0.0003 9 1 6.3956 3.8408 0.5561 10 6 7.5425 3.1744 -1.2648 11 6 8.1937 2.6160 -0.0045 12 6 8.8625 1.2525 0.2020 13 6 10.1773 2.0235 0.4139 14 6 9.3169 3.2255 0.8416 15 16 3.9346 -0.7100 -0.0065 16 6 2.2251 -1.1391 0.0005 17 16 1.5697 -2.7747 0.0006 18 6 3.0665 -3.7042 0.0006 19 1 4.0187 -3.1945 0.0009 20 6 3.0221 -5.0878 0.0012 21 7 1.8600 -5.7099 0.0023 22 14 4.6090 -6.0732 0.0004 23 1 5.3996 -5.7392 1.2123 24 1 4.2909 -7.5238 0.0019 25 1 5.3979 -5.7401 -1.2127 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.0800 2.9686 -0.0003 30 1 7.3846 2.4879 -2.0965 31 1 7.7794 4.2019 -1.5409 32 1 8.5163 0.7259 1.0913 33 1 8.8620 0.6259 -0.6899 34 1 10.7367 2.1929 -0.5061 35 1 10.7945 1.6210 1.2172 36 1 9.6806 4.1805 0.4625 37 1 9.0964 3.2495 1.9088 38 1 1.8289 -6.6793 0.0031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610738227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:45 Heat of formation + Delta-G solvation = 28.774661 kcal Electronic energy + Delta-G solvation = -21906.678124 eV Core-core repulsion = 18581.652279 eV Total energy + Delta-G solvation = -3325.025845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76344 -40.41833 -39.48459 -36.08828 -34.82923 -34.70271 -32.03417 -28.81219 -27.73624 -26.78723 -26.49122 -24.03117 -23.80656 -22.30439 -21.07171 -19.88772 -19.25329 -19.01388 -18.15100 -17.44853 -17.08489 -16.77377 -16.37194 -16.08903 -16.00855 -15.58038 -15.33946 -14.94799 -14.39649 -13.93820 -13.58380 -13.43150 -13.30345 -13.24960 -13.08659 -13.03360 -12.88863 -12.47143 -12.35079 -12.31296 -12.12559 -12.05221 -11.39872 -11.34609 -11.10679 -11.04644 -10.79532 -10.69747 -10.48850 -10.47531 -9.53340 -8.58765 -8.37683 -6.31151 -0.24335 0.21059 0.82017 1.13861 1.25201 1.34122 1.38292 1.48543 1.65005 1.98524 2.13410 2.70570 2.80352 3.08279 3.25419 3.60490 3.65554 3.76971 3.84682 3.95892 4.01076 4.42548 4.50022 4.59333 4.69375 4.79724 4.83628 4.86626 4.90167 4.95426 5.00971 5.06479 5.10706 5.15860 5.27795 5.37928 5.46748 5.51886 5.97859 6.00709 6.80714 6.85730 6.87472 8.48947 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003950 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.482920 B = 7087.617487 C = 9118.161630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.484 5.484 4 C 0.228 3.772 5 N -0.601 5.601 6 C 0.531 3.469 7 O -0.536 6.536 8 C -0.174 4.174 9 H 0.165 0.835 10 C -0.102 4.102 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.134 4.134 14 C -0.083 4.083 15 S 0.156 5.844 16 C -0.283 4.283 17 S 0.099 5.901 18 C -0.577 4.577 19 H 0.079 0.921 20 C 0.037 3.963 21 N -0.896 5.896 22 Si 0.984 3.016 23 H -0.266 1.266 24 H -0.262 1.262 25 H -0.265 1.265 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.436 0.564 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 20.754 -0.170 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.206 5.206 4 C -0.145 4.145 5 N -0.253 5.253 6 C 0.319 3.681 7 O -0.411 6.411 8 C -0.195 4.195 9 H 0.183 0.817 10 C -0.139 4.139 11 C -0.134 4.134 12 C -0.141 4.141 13 C -0.171 4.171 14 C -0.120 4.120 15 S 0.401 5.599 16 C -0.519 4.519 17 S 0.347 5.653 18 C -0.726 4.726 19 H 0.097 0.903 20 C -0.171 4.171 21 N -0.530 5.530 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.186 1.186 25 H -0.190 1.190 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.277 0.723 30 H 0.107 0.893 31 H 0.164 0.836 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.983 19.181 -0.174 22.617 hybrid contribution 0.521 -0.282 0.033 0.593 sum 12.504 18.899 -0.141 22.662 Atomic orbital electron populations 1.20247 0.85649 1.03144 1.03100 1.19713 0.98439 0.84173 1.08094 1.66037 1.02697 1.31340 1.20574 1.24160 0.90225 0.93080 1.07023 1.42587 1.03981 1.07865 1.70871 1.20920 0.81388 0.91168 0.74602 1.90702 1.77354 1.24409 1.48671 1.22105 0.91228 0.98241 1.07900 0.81734 1.22996 0.97423 1.04207 0.89305 1.22538 0.89985 0.99208 1.01638 1.22381 0.96275 0.94505 1.00925 1.22800 0.95354 0.96663 1.02304 1.22475 0.91947 0.98476 0.99120 1.86023 1.02281 0.98213 1.73425 1.28588 1.01698 1.06024 1.15545 1.82855 1.11156 0.86196 1.85112 1.23411 0.93864 0.94882 1.60414 0.90275 1.25866 1.01373 0.97373 0.92457 1.70083 1.26147 1.10784 1.46000 0.85204 0.77337 0.77387 0.79573 1.19033 1.18627 1.19009 0.90303 0.91369 0.89467 0.72290 0.89328 0.83577 0.91659 0.93290 0.89064 0.90728 0.88689 0.89210 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.24 0.71 -1.42 16 2 C 0.04 1.57 6.73 41.77 0.28 1.85 16 3 N -0.48 -18.94 10.55 -184.87 -1.95 -20.89 16 4 C 0.23 8.62 8.40 179.15 1.50 10.13 16 5 N -0.60 -16.45 5.40 -309.57 -1.67 -18.12 16 6 C 0.53 14.41 7.58 87.65 0.66 15.08 16 7 O -0.54 -19.43 12.66 -3.07 -0.04 -19.47 16 8 C -0.17 -2.85 6.19 -11.68 -0.07 -2.93 16 9 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 10 C -0.10 -1.37 10.24 30.46 0.31 -1.06 16 11 C -0.13 -2.21 2.88 -52.37 -0.15 -2.36 16 12 C -0.10 -2.27 6.47 30.98 0.20 -2.07 16 13 C -0.13 -1.93 8.08 31.19 0.25 -1.68 16 14 C -0.08 -0.97 8.10 30.98 0.25 -0.72 16 15 S 0.16 7.12 18.35 -56.49 -1.04 6.09 16 16 C -0.28 -13.59 6.67 67.00 0.45 -13.14 16 17 S 0.10 5.29 20.74 -56.49 -1.17 4.11 16 18 C -0.58 -33.21 9.26 67.87 0.63 -32.58 16 19 H 0.08 4.55 5.97 -2.91 -0.02 4.53 16 20 C 0.04 2.03 5.49 84.74 0.46 2.50 16 21 N -0.90 -51.32 13.22 21.59 0.29 -51.04 16 22 Si 0.98 43.75 29.55 68.60 2.03 45.78 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.41 7.38 -2.38 -0.02 2.39 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.44 8.31 8.82 -92.71 -0.82 7.49 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.28 14.91 8.32 -92.71 -0.77 14.14 16 Total: -1.00 -71.91 347.86 2.22 -69.69 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.28 Total: 12.26 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 5.50 Total: -28.41 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.34 Total: -90.05 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.47 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 12.41 SS G_CDS: -2.21 Total: 10.20 kcal Total: -71.91 2.22 -69.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610738227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.465 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds