Wall clock time and date at job start Tue Mar 31 2020 14:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48494 * 109.47565 * 270.00019 * 3 2 1 5 5 H 1.48499 * 109.47343 * 30.00380 * 3 2 1 6 6 H 1.48510 * 109.47242 * 149.99879 * 3 2 1 7 7 C 1.37878 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99251 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00435 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99578 * 270.00153 * 10 9 7 12 12 C 1.52998 * 109.46842 * 269.99434 * 11 10 9 13 13 C 1.53004 * 117.50137 * 243.62386 * 12 11 10 14 14 C 1.53002 * 60.00057 * 252.51161 * 13 12 11 15 15 C 1.34773 * 120.00089 * 89.99644 * 10 9 7 16 16 S 1.71204 * 120.00149 * 0.02562 * 15 10 9 17 17 N 1.34780 * 119.99943 * 180.27763 * 15 10 9 18 18 C 1.39945 * 120.00154 * 175.39149 * 17 15 10 19 19 C 1.38866 * 120.05664 * 225.46442 * 18 17 15 20 20 C 1.38115 * 119.93958 * 179.76281 * 19 18 17 21 21 C 1.38385 * 120.05469 * 0.48510 * 20 19 18 22 22 Cl 1.73600 * 119.93909 * 179.74083 * 21 20 19 23 23 C 1.38377 * 120.11842 * 359.76596 * 21 20 19 24 24 C 1.38107 * 120.06078 * 0.02562 * 23 21 20 25 25 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47121 * 59.99469 * 9 7 2 27 27 H 1.09000 * 109.46883 * 300.00301 * 9 7 2 28 28 H 1.08995 * 109.47214 * 29.99649 * 11 10 9 29 29 H 1.09003 * 109.47057 * 149.99599 * 11 10 9 30 30 H 1.09002 * 115.55333 * 29.33381 * 12 11 10 31 31 H 1.08996 * 117.49447 * 0.02562 * 13 12 11 32 32 H 1.08999 * 117.49955 * 145.01937 * 13 12 11 33 33 H 1.08996 * 117.49965 * 252.51398 * 14 13 12 34 34 H 1.08998 * 117.49919 * 107.48432 * 14 13 12 35 35 H 0.97004 * 119.99462 * 355.39313 * 17 15 10 36 36 H 1.07997 * 120.03398 * 359.97438 * 19 18 17 37 37 H 1.07994 * 119.96980 * 180.22899 * 20 19 18 38 38 H 1.08004 * 119.97049 * 179.97438 * 23 21 20 39 39 H 1.08002 * 120.03294 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2671 1.2668 12 6 5.6884 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1086 -3.5721 3.0758 15 6 4.2250 -3.2092 -1.1691 16 16 3.9407 -2.4004 -2.6510 17 7 4.6690 -4.4818 -1.1703 18 6 4.8107 -5.1723 -2.3793 19 6 4.3460 -6.4758 -2.4943 20 6 4.4828 -7.1534 -3.6901 21 6 5.0912 -6.5378 -4.7698 22 17 5.2676 -7.3945 -6.2693 23 6 5.5598 -5.2407 -4.6562 24 6 5.4218 -4.5572 -3.4641 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8894 28 1 3.5625 -2.8838 2.0266 29 1 4.0767 -4.3362 1.1353 30 1 6.1282 -2.0833 1.3870 31 1 6.1902 -5.2153 1.5385 32 1 7.6595 -4.1008 1.5316 33 1 6.8250 -2.9870 3.6523 34 1 5.3556 -4.1016 3.6596 35 1 4.8902 -4.9190 -0.3331 36 1 3.8751 -6.9583 -1.6506 37 1 4.1183 -8.1658 -3.7812 38 1 6.0347 -4.7627 -5.5003 39 1 5.7880 -3.5450 -3.3758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728790748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:08 Heat of formation + Delta-G solvation = 77.955642 kcal Electronic energy + Delta-G solvation = -22432.315895 eV Core-core repulsion = 19107.378991 eV Total energy + Delta-G solvation = -3324.936904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22503 -38.87260 -37.07956 -36.41576 -35.01516 -32.56579 -31.10246 -29.67875 -28.75655 -27.20215 -23.81457 -23.06075 -22.63725 -21.82846 -21.79177 -20.21392 -18.38007 -17.88664 -17.04492 -16.64739 -15.75498 -15.54264 -15.28748 -14.90679 -14.39215 -14.09155 -14.04211 -13.64380 -13.49879 -13.11622 -12.81827 -12.43444 -12.26153 -12.06416 -11.83525 -11.76261 -11.49819 -11.40953 -11.01179 -10.84070 -10.79940 -10.66507 -10.45348 -10.27896 -10.19246 -9.66352 -9.09148 -9.04197 -8.63671 -8.04744 -7.17117 -6.41928 -6.13675 -4.13883 1.00854 1.38243 1.92575 2.13127 2.42972 3.05292 3.26806 3.30652 3.36834 3.38807 3.65695 3.70280 4.35527 4.47484 4.60929 4.74092 4.78792 4.89893 4.91803 5.18515 5.27307 5.31250 5.36917 5.38086 5.50785 5.55604 5.63242 5.84447 5.87052 5.99149 6.01954 6.12352 6.28494 6.39395 6.50161 6.66925 6.85336 7.01587 7.29146 7.44849 7.63132 8.36807 8.85242 9.43487 10.99267 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.003952 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.219801 B = 7083.550899 C = 8639.810256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.081 3.919 3 Si 0.874 3.126 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.209 3.791 10 N -0.525 5.525 11 C 0.121 3.879 12 C -0.174 4.174 13 C -0.184 4.184 14 C -0.167 4.167 15 C 0.557 3.443 16 S -0.623 6.623 17 N -0.650 5.650 18 C 0.147 3.853 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.035 4.035 22 Cl -0.081 7.081 23 C -0.107 4.107 24 C -0.055 4.055 25 H 0.266 0.734 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.401 0.599 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.835 -14.198 1.219 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.122 4.122 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.092 0.908 9 C 0.089 3.911 10 N -0.227 5.227 11 C -0.005 4.005 12 C -0.194 4.194 13 C -0.221 4.221 14 C -0.204 4.204 15 C 0.200 3.800 16 S -0.487 6.487 17 N -0.280 5.280 18 C 0.053 3.947 19 C -0.140 4.140 20 C -0.130 4.130 21 C -0.062 4.062 22 Cl -0.052 7.052 23 C -0.128 4.128 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.241 0.759 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.398 -13.433 0.274 19.693 hybrid contribution 0.330 0.177 1.127 1.188 sum 14.727 -13.255 1.401 19.864 Atomic orbital electron populations 1.69871 1.06189 1.27129 1.49771 1.24713 0.94680 0.98732 0.94078 0.86892 0.79935 0.83882 0.79232 1.19375 1.21119 1.19237 1.20963 0.87892 0.95049 1.52384 0.90787 1.20351 0.96873 0.74462 0.99435 1.47442 1.57234 1.16363 1.01707 1.21438 0.94905 0.96847 0.87311 1.22859 0.95672 0.99241 1.01633 1.23084 0.99992 0.96374 1.02613 1.22932 1.03514 1.03576 0.90394 1.22268 0.81026 0.84005 0.92710 1.93161 1.73752 1.68430 1.13392 1.42266 1.65884 1.11270 1.08578 1.17447 0.99148 0.91634 0.86519 1.20832 1.00628 0.94314 0.98190 1.20652 1.00636 1.00481 0.91261 1.20925 1.03799 0.93870 0.87611 1.98351 1.96518 1.77212 1.33154 1.20871 1.01147 0.92201 0.98597 1.21599 0.94860 1.00196 0.91264 0.92395 0.94486 0.91197 0.87357 0.91146 0.86857 0.89025 0.88557 0.88436 0.88345 0.75943 0.85281 0.84930 0.84758 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.22 9.94 -34.44 -0.34 -14.56 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.21 4.68 3.99 -5.20 -0.02 4.65 16 10 N -0.53 -9.59 2.46 -177.09 -0.43 -10.02 16 11 C 0.12 1.63 5.42 -4.04 -0.02 1.61 16 12 C -0.17 -1.92 6.01 -90.62 -0.54 -2.46 16 13 C -0.18 -1.55 9.88 -26.73 -0.26 -1.82 16 14 C -0.17 -1.43 10.25 -26.73 -0.27 -1.70 16 15 C 0.56 10.33 7.56 -86.92 -0.66 9.67 16 16 S -0.62 -14.24 24.26 -107.50 -2.61 -16.85 16 17 N -0.65 -9.22 5.15 -11.39 -0.06 -9.28 16 18 C 0.15 2.06 5.92 -83.69 -0.50 1.56 16 19 C -0.12 -1.40 9.97 -39.39 -0.39 -1.79 16 20 C -0.11 -1.25 9.82 -39.57 -0.39 -1.64 16 21 C -0.03 -0.42 6.32 -39.48 -0.25 -0.67 16 22 Cl -0.08 -0.90 28.95 -51.86 -1.50 -2.40 16 23 C -0.11 -1.39 9.82 -39.58 -0.39 -1.78 16 24 C -0.06 -0.81 7.87 -39.39 -0.31 -1.12 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 27 H 0.07 1.71 6.00 -51.93 -0.31 1.39 16 28 H 0.11 1.53 8.07 -51.93 -0.42 1.12 16 29 H 0.07 0.78 6.16 -51.93 -0.32 0.47 16 30 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.09 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.45 5.96 -40.82 -0.24 4.20 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.16 2.55 6.13 -45.25 -0.28 2.27 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -32.61 351.50 -12.54 -45.15 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.89 Total: 5.78 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -4.45 Total: -7.85 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.28 Total: -45.40 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -14.24 SS G_CDS: -2.61 Total: -16.85 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.61 -12.54 -45.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.102 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds