Wall clock time and date at job start Tue Mar 31 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48494 * 109.47565 * 270.00019 * 3 2 1 5 5 H 1.48499 * 109.47343 * 30.00380 * 3 2 1 6 6 H 1.48510 * 109.47242 * 149.99879 * 3 2 1 7 7 C 1.37878 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99251 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00435 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99578 * 270.00153 * 10 9 7 12 12 C 1.52998 * 109.46842 * 269.99434 * 11 10 9 13 13 C 1.53004 * 117.50137 * 243.62386 * 12 11 10 14 14 C 1.53002 * 60.00057 * 252.51161 * 13 12 11 15 15 C 1.34773 * 120.00089 * 89.99644 * 10 9 7 16 16 S 1.71204 * 120.00149 * 0.02562 * 15 10 9 17 17 N 1.34780 * 119.99943 * 180.27763 * 15 10 9 18 18 C 1.39945 * 120.00154 * 175.39149 * 17 15 10 19 19 C 1.38866 * 120.05664 * 225.46442 * 18 17 15 20 20 C 1.38115 * 119.93958 * 179.76281 * 19 18 17 21 21 C 1.38385 * 120.05469 * 0.48510 * 20 19 18 22 22 Cl 1.73600 * 119.93909 * 179.74083 * 21 20 19 23 23 C 1.38377 * 120.11842 * 359.76596 * 21 20 19 24 24 C 1.38107 * 120.06078 * 0.02562 * 23 21 20 25 25 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47121 * 59.99469 * 9 7 2 27 27 H 1.09000 * 109.46883 * 300.00301 * 9 7 2 28 28 H 1.08995 * 109.47214 * 29.99649 * 11 10 9 29 29 H 1.09003 * 109.47057 * 149.99599 * 11 10 9 30 30 H 1.09002 * 115.55333 * 29.33381 * 12 11 10 31 31 H 1.08996 * 117.49447 * 0.02562 * 13 12 11 32 32 H 1.08999 * 117.49955 * 145.01937 * 13 12 11 33 33 H 1.08996 * 117.49965 * 252.51398 * 14 13 12 34 34 H 1.08998 * 117.49919 * 107.48432 * 14 13 12 35 35 H 0.97004 * 119.99462 * 355.39313 * 17 15 10 36 36 H 1.07997 * 120.03398 * 359.97438 * 19 18 17 37 37 H 1.07994 * 119.96980 * 180.22899 * 20 19 18 38 38 H 1.08004 * 119.97049 * 179.97438 * 23 21 20 39 39 H 1.08002 * 120.03294 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1292 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2671 1.2668 12 6 5.6884 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1086 -3.5721 3.0758 15 6 4.2250 -3.2092 -1.1691 16 16 3.9407 -2.4004 -2.6510 17 7 4.6690 -4.4818 -1.1703 18 6 4.8107 -5.1723 -2.3793 19 6 4.3460 -6.4758 -2.4943 20 6 4.4828 -7.1534 -3.6901 21 6 5.0912 -6.5378 -4.7698 22 17 5.2676 -7.3945 -6.2693 23 6 5.5598 -5.2407 -4.6562 24 6 5.4218 -4.5572 -3.4641 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8894 28 1 3.5625 -2.8838 2.0266 29 1 4.0767 -4.3362 1.1353 30 1 6.1282 -2.0833 1.3870 31 1 6.1902 -5.2153 1.5385 32 1 7.6595 -4.1008 1.5316 33 1 6.8250 -2.9870 3.6523 34 1 5.3556 -4.1016 3.6596 35 1 4.8902 -4.9190 -0.3331 36 1 3.8751 -6.9583 -1.6506 37 1 4.1183 -8.1658 -3.7812 38 1 6.0347 -4.7627 -5.5003 39 1 5.7880 -3.5450 -3.3758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728790748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:07 Heat of formation + Delta-G solvation = 60.852640 kcal Electronic energy + Delta-G solvation = -22433.057537 eV Core-core repulsion = 19107.378991 eV Total energy + Delta-G solvation = -3325.678546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44327 -39.98888 -38.00187 -37.42039 -36.33033 -34.59330 -32.10440 -31.10274 -30.10359 -28.60856 -25.36235 -24.25944 -23.34544 -23.16091 -22.87104 -21.33580 -19.63587 -19.16054 -19.09987 -17.75372 -17.04221 -16.75461 -16.45313 -16.12374 -15.89671 -15.34179 -15.15558 -14.71849 -14.56976 -14.48607 -14.22170 -14.03465 -13.57727 -13.28666 -13.16884 -12.78752 -12.53858 -12.47016 -12.38345 -12.35361 -12.17522 -12.02041 -11.78138 -11.75876 -11.37855 -11.01848 -10.80522 -10.43096 -10.07014 -9.24369 -8.88873 -8.31326 -8.11612 -6.35109 -0.12693 0.38874 0.51996 0.94600 1.17923 1.33230 1.42208 1.44357 1.60116 2.20598 2.32986 2.66612 2.82864 3.05582 3.62035 3.74070 3.83933 3.93524 3.96947 4.06001 4.25310 4.31060 4.38506 4.48689 4.53973 4.64695 4.75904 4.84077 4.89173 4.99493 5.05089 5.14484 5.21354 5.22859 5.25230 5.32196 5.40715 5.61317 5.64746 5.91901 6.22015 6.31416 6.63046 7.25980 8.85624 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.003952 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.219801 B = 7083.550899 C = 8639.810256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.222 3.778 10 N -0.527 5.527 11 C 0.118 3.882 12 C -0.196 4.196 13 C -0.170 4.170 14 C -0.152 4.152 15 C 0.578 3.422 16 S -0.722 6.722 17 N -0.621 5.621 18 C 0.121 3.879 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.037 4.037 22 Cl -0.069 7.069 23 C -0.114 4.114 24 C -0.069 4.069 25 H 0.267 0.733 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.420 0.580 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.798 -16.350 2.761 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.158 1.158 7 C -0.557 4.557 8 H 0.048 0.952 9 C 0.100 3.900 10 N -0.229 5.229 11 C -0.006 4.006 12 C -0.215 4.215 13 C -0.207 4.207 14 C -0.189 4.189 15 C 0.216 3.784 16 S -0.588 6.588 17 N -0.251 5.251 18 C 0.027 3.973 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.064 4.064 22 Cl -0.040 7.040 23 C -0.135 4.135 24 C -0.092 4.092 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.263 0.737 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.419 -15.675 1.854 22.776 hybrid contribution -0.257 0.620 0.627 0.918 sum 16.162 -15.055 2.481 22.227 Atomic orbital electron populations 1.70021 1.08151 1.28168 1.51925 1.25611 0.95439 1.02759 0.93868 0.85853 0.80007 0.79068 0.78857 1.20571 1.20375 1.15828 1.21125 0.90300 0.93213 1.51070 0.95180 1.19925 0.93742 0.77002 0.99362 1.47315 1.56743 1.15477 1.03332 1.21732 0.96610 0.97649 0.84610 1.22620 0.94356 1.00033 1.04539 1.23222 0.99773 0.95815 1.01861 1.23051 1.03433 1.02754 0.89707 1.21701 0.80629 0.85035 0.91026 1.93337 1.77616 1.70808 1.17058 1.42042 1.63792 1.09396 1.09871 1.17690 1.00738 0.92666 0.86203 1.21115 0.99393 0.93010 0.99339 1.21015 0.99438 1.01562 0.90490 1.21071 1.03273 0.93626 0.88461 1.98359 1.96429 1.76750 1.32493 1.20960 1.01406 0.92816 0.98283 1.21440 0.95829 0.99562 0.92358 0.92358 0.92352 0.92942 0.88204 0.88524 0.88566 0.87218 0.87967 0.87582 0.87142 0.73696 0.82390 0.82078 0.84091 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.02 1.25 5.47 84.66 0.46 1.72 16 3 Si 0.94 43.71 27.47 68.60 1.88 45.59 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 7 C -0.52 -28.91 9.94 25.60 0.25 -28.66 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.22 9.97 3.99 85.63 0.34 10.31 16 10 N -0.53 -19.08 2.46 -714.18 -1.75 -20.83 16 11 C 0.12 2.96 5.42 86.38 0.47 3.43 16 12 C -0.20 -3.83 6.01 -10.79 -0.06 -3.90 16 13 C -0.17 -2.25 9.88 30.60 0.30 -1.94 16 14 C -0.15 -2.06 10.25 30.60 0.31 -1.75 16 15 C 0.58 21.46 7.56 179.05 1.35 22.81 16 16 S -0.72 -34.41 24.26 -56.49 -1.37 -35.78 16 17 N -0.62 -16.71 5.15 -189.96 -0.98 -17.69 16 18 C 0.12 3.23 5.92 38.15 0.23 3.46 16 19 C -0.11 -2.24 9.97 22.39 0.22 -2.01 16 20 C -0.11 -2.07 9.82 22.28 0.22 -1.85 16 21 C -0.04 -0.84 6.32 22.34 0.14 -0.70 16 22 Cl -0.07 -1.41 28.95 -2.72 -0.08 -1.49 16 23 C -0.11 -2.92 9.82 22.27 0.22 -2.70 16 24 C -0.07 -2.02 7.87 22.39 0.18 -1.85 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.06 2.40 7.13 -2.39 -0.02 2.39 16 27 H 0.05 2.60 6.00 -2.39 -0.01 2.59 16 28 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 29 H 0.10 1.86 6.16 -2.39 -0.01 1.84 16 30 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.11 1.06 7.69 -2.39 -0.02 1.05 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 8.06 5.96 -92.71 -0.55 7.50 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.13 4.61 6.13 -7.51 -0.05 4.56 16 Total: -1.00 -75.78 351.50 3.08 -72.70 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.44 Total: 19.57 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.64 Total: -3.64 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -2.43 Total: -96.95 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 16 Polarization: -34.41 SS G_CDS: -1.37 Total: -35.78 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -75.78 3.08 -72.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.551 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds