Wall clock time and date at job start Tue Mar 31 2020 14:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48505 * 109.47188 * 270.00304 * 3 2 1 5 5 H 1.48496 * 109.47062 * 30.00292 * 3 2 1 6 6 H 1.48501 * 109.47182 * 150.00683 * 3 2 1 7 7 C 1.37871 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00156 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47532 * 180.02562 * 9 7 2 11 11 C 1.46508 * 119.99746 * 270.00327 * 10 9 7 12 12 C 1.52997 * 109.46986 * 269.99482 * 11 10 9 13 13 C 1.52996 * 117.50271 * 243.62392 * 12 11 10 14 14 C 1.53002 * 60.00296 * 252.51475 * 13 12 11 15 15 C 1.34771 * 120.00382 * 89.99649 * 10 9 7 16 16 S 1.71200 * 119.99856 * 0.02562 * 15 10 9 17 17 N 1.34783 * 120.00462 * 180.02562 * 15 10 9 18 18 C 1.39952 * 120.00252 * 185.46512 * 17 15 10 19 19 C 1.38856 * 120.07147 * 44.35147 * 18 17 15 20 20 C 1.38118 * 119.93782 * 180.02562 * 19 18 17 21 21 C 1.38302 * 120.09197 * 0.02562 * 20 19 18 22 22 C 1.38261 * 120.14974 * 0.02562 * 21 20 19 23 23 C 1.38227 * 120.05866 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.04486 * 180.02562 * 23 22 21 25 25 H 0.97000 * 119.99840 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46646 * 60.00276 * 9 7 2 27 27 H 1.09004 * 109.46946 * 300.00749 * 9 7 2 28 28 H 1.09000 * 109.46970 * 30.00106 * 11 10 9 29 29 H 1.09007 * 109.46773 * 149.99929 * 11 10 9 30 30 H 1.08997 * 115.54946 * 29.33612 * 12 11 10 31 31 H 1.09007 * 117.49396 * 359.97438 * 13 12 11 32 32 H 1.08999 * 117.50386 * 145.02558 * 13 12 11 33 33 H 1.09000 * 117.49168 * 252.51350 * 14 13 12 34 34 H 1.08994 * 117.50370 * 107.48848 * 14 13 12 35 35 H 0.97002 * 119.99143 * 5.46121 * 17 15 10 36 36 H 1.07999 * 120.03637 * 0.04452 * 19 18 17 37 37 H 1.08005 * 119.95455 * 180.28120 * 20 19 18 38 38 H 1.07997 * 119.92256 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.96894 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2694 12 6 1.7483 -5.3005 -1.7110 13 6 2.3402 -6.7086 -1.7994 14 6 2.0087 -5.9365 -3.0781 15 6 2.6409 -4.1249 1.1666 16 16 2.0843 -3.4746 2.6492 17 7 3.5171 -5.1490 1.1666 18 6 3.8842 -5.7559 2.3731 19 6 2.9164 -6.0625 3.3204 20 6 3.2818 -6.6609 4.5104 21 6 4.6101 -6.9547 4.7596 22 6 5.5769 -6.6501 3.8194 23 6 5.2182 -6.0511 2.6264 24 17 6.4323 -5.6695 1.4458 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8904 27 1 0.6246 -2.5570 0.8897 28 1 2.6868 -3.3876 -2.0289 29 1 3.6885 -4.5594 -1.1390 30 1 0.7114 -5.2095 -1.3876 31 1 3.3928 -6.8290 -1.5433 32 1 1.6927 -7.5444 -1.5340 33 1 1.1431 -6.2643 -3.6537 34 1 2.8430 -5.5491 -3.6627 35 1 3.8932 -5.4654 0.3303 36 1 1.8788 -5.8335 3.1269 37 1 2.5287 -6.9036 5.2455 38 1 4.8928 -7.4223 5.6912 39 1 6.6133 -6.8811 4.0169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728792836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:10 Heat of formation + Delta-G solvation = 58.159856 kcal Electronic energy + Delta-G solvation = -22773.427004 eV Core-core repulsion = 19447.631690 eV Total energy + Delta-G solvation = -3325.795314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43159 -39.94767 -37.88851 -37.49352 -36.55020 -34.63060 -31.72710 -30.97334 -29.89227 -28.49079 -25.60793 -24.22484 -23.35905 -23.26010 -22.88071 -21.37000 -19.72657 -19.13211 -18.63379 -17.61396 -17.01909 -16.77451 -16.43065 -16.03971 -16.00296 -15.34633 -15.16889 -14.80204 -14.68321 -14.55618 -13.94068 -13.83782 -13.41136 -13.06564 -12.91265 -12.75397 -12.64090 -12.49385 -12.42877 -12.37197 -12.24563 -12.15598 -11.95296 -11.80409 -11.39859 -11.04727 -10.62823 -10.59367 -9.81847 -9.29272 -8.82251 -8.21679 -8.11131 -6.32459 -0.08599 0.31164 0.63485 0.97077 1.07328 1.35696 1.40398 1.48928 1.65194 2.19620 2.40636 2.73610 2.80258 3.11793 3.58937 3.71204 3.82691 3.90144 4.01823 4.12250 4.24922 4.36214 4.40965 4.48170 4.51377 4.70667 4.74856 4.90773 4.95021 5.10285 5.10532 5.17710 5.20663 5.24092 5.33715 5.54512 5.58336 5.69160 5.81408 5.96905 6.01181 6.31137 6.71247 7.34009 8.86320 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004790 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.278249 B = 5843.729648 C = 6838.468837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.258 3.742 10 N -0.529 5.529 11 C 0.120 3.880 12 C -0.195 4.195 13 C -0.169 4.169 14 C -0.149 4.149 15 C 0.578 3.422 16 S -0.719 6.719 17 N -0.626 5.626 18 C 0.130 3.870 19 C -0.077 4.077 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.107 4.107 23 C -0.056 4.056 24 Cl -0.070 7.070 25 H 0.267 0.733 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.413 0.587 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 -19.735 -1.001 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.065 0.935 9 C 0.137 3.863 10 N -0.230 5.230 11 C -0.004 4.004 12 C -0.215 4.215 13 C -0.206 4.206 14 C -0.186 4.186 15 C 0.217 3.783 16 S -0.587 6.587 17 N -0.256 5.256 18 C 0.035 3.965 19 C -0.099 4.099 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.085 4.085 24 Cl -0.041 7.041 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.255 0.745 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.554 -19.053 -0.333 21.783 hybrid contribution 0.415 1.080 -1.231 1.690 sum 10.969 -17.973 -1.564 21.114 Atomic orbital electron populations 1.70017 1.07214 1.28007 1.50759 1.25583 0.95614 1.02249 0.94469 0.85541 0.78263 0.79183 0.78562 1.18837 1.20781 1.20465 1.21301 0.92660 0.91208 1.51465 0.93510 1.19410 0.87089 0.81403 0.98367 1.47655 1.40639 1.31656 1.03086 1.21660 0.96885 0.96861 0.85028 1.22577 0.99873 0.94400 1.04652 1.23175 1.02013 0.93355 1.02048 1.23056 1.04354 1.01623 0.89580 1.21722 0.82966 0.82379 0.91268 1.93253 1.74306 1.74293 1.16870 1.42108 1.42671 1.31051 1.09762 1.17307 0.91886 0.99187 0.88103 1.21279 0.99459 0.94825 0.94383 1.21374 0.97950 0.97624 0.96100 1.21523 0.91578 0.98561 0.99867 1.21182 1.02031 0.98801 0.90674 1.20973 0.86868 1.06695 0.93987 1.98353 1.54610 1.93382 1.57742 0.92452 0.94780 0.93966 0.88151 0.89252 0.89085 0.87762 0.87928 0.87425 0.87004 0.74460 0.86011 0.83152 0.81334 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 13.29 21.45 0.28 -54.43 16 2 C 0.02 1.18 5.46 84.65 0.46 1.64 16 3 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 7 C -0.53 -29.53 9.39 25.60 0.24 -29.29 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.19 4.92 85.64 0.42 13.62 16 10 N -0.53 -21.39 2.46 -714.16 -1.75 -23.14 16 11 C 0.12 3.54 5.50 86.38 0.48 4.01 16 12 C -0.20 -4.79 6.01 -10.79 -0.06 -4.85 16 13 C -0.17 -3.00 10.18 30.59 0.31 -2.69 16 14 C -0.15 -2.58 10.25 30.60 0.31 -2.27 16 15 C 0.58 23.63 7.46 179.05 1.34 24.97 16 16 S -0.72 -36.35 24.67 -56.49 -1.39 -37.75 16 17 N -0.63 -19.72 4.76 -189.90 -0.90 -20.63 16 18 C 0.13 3.88 5.83 38.16 0.22 4.10 16 19 C -0.08 -2.32 7.88 22.39 0.18 -2.14 16 20 C -0.11 -2.48 10.04 22.26 0.22 -2.26 16 21 C -0.10 -1.69 10.04 22.29 0.22 -1.47 16 22 C -0.11 -2.08 9.82 22.27 0.22 -1.86 16 23 C -0.06 -1.40 6.34 22.44 0.14 -1.26 16 24 Cl -0.07 -1.62 28.16 -2.72 -0.08 -1.70 16 25 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.03 1.77 8.07 -2.39 -0.02 1.76 16 27 H 0.04 2.50 6.58 -2.39 -0.02 2.49 16 28 H 0.10 3.06 8.07 -2.39 -0.02 3.04 16 29 H 0.09 2.16 6.02 -2.38 -0.01 2.14 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.10 1.57 7.92 -2.38 -0.02 1.55 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 10.71 6.00 -92.71 -0.56 10.15 16 36 H 0.12 4.32 6.53 -2.91 -0.02 4.30 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -73.08 355.37 3.40 -69.68 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.52 Total: 20.31 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 4.70 Total: 0.26 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -2.37 Total: -98.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: -36.35 SS G_CDS: -1.39 Total: -37.75 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -73.08 3.40 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728792836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.839 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds