Wall clock time and date at job start Tue Mar 31 2020 13:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47019 * 239.99835 * 3 2 1 5 5 H 1.48497 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46772 * 119.99920 * 3 2 1 7 7 C 1.38654 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99957 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.35765 * 117.00153 * 185.09791 * 9 7 2 11 11 C 1.39060 * 119.98395 * 174.43298 * 10 9 7 12 12 C 1.38268 * 120.29842 * 180.02562 * 11 10 9 13 13 C 1.37940 * 120.25508 * 359.97438 * 12 11 10 14 14 C 1.39969 * 119.95653 * 0.02562 * 13 12 11 15 15 C 1.46999 * 120.14973 * 180.02562 * 14 13 12 16 16 C 1.35602 * 119.99948 * 322.80604 * 15 14 13 17 17 O 1.35368 * 126.23050 * 171.95680 * 16 15 14 18 18 C 1.35083 * 111.83867 * 179.97438 * 17 16 15 19 19 C 1.38949 * 131.36158 * 179.97438 * 18 17 16 20 20 C 1.38542 * 120.00292 * 180.02562 * 19 18 17 21 21 O 1.35737 * 119.70796 * 180.02562 * 20 19 18 22 22 C 1.39242 * 120.58147 * 0.02562 * 20 19 18 23 23 C 1.36614 * 120.15040 * 359.97438 * 22 20 19 24 24 C 1.39557 * 119.88654 * 0.04232 * 23 22 20 25 25 C 1.47207 * 126.22575 * 351.65393 * 16 15 14 26 26 O 1.21853 * 127.75504 * 359.96665 * 25 16 15 27 27 C 1.38501 * 119.97626 * 354.45506 * 10 9 7 28 28 H 0.96999 * 119.99597 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.85126 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.87149 * 179.70394 * 12 11 10 31 31 H 1.07999 * 120.01986 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.00662 * 142.80820 * 15 14 13 33 33 H 1.07999 * 119.99482 * 0.05924 * 19 18 17 34 34 H 0.96699 * 113.99217 * 90.00758 * 21 20 19 35 35 H 1.07998 * 119.92756 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.05618 * 180.02562 * 23 22 20 37 37 H 1.08005 * 120.13055 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1054 11 6 1.4336 -4.7352 0.2274 12 6 2.1760 -5.8965 0.3373 13 6 3.5543 -5.8440 0.3264 14 6 4.2058 -4.6112 0.2041 15 6 5.6745 -4.5503 0.1914 16 6 6.3945 -5.3842 0.9819 17 8 7.7385 -5.5442 0.9614 18 6 8.1507 -6.4506 1.8743 19 6 9.4188 -6.9194 2.1950 20 6 9.5747 -7.8696 3.1910 21 8 10.8163 -8.3230 3.4998 22 6 8.4690 -8.3637 3.8781 23 6 7.2153 -7.9133 3.5751 24 6 7.0433 -6.9565 2.5738 25 6 5.8574 -6.2757 2.0230 26 8 4.6935 -6.4201 2.3539 27 6 3.4532 -3.4377 0.0935 28 1 -0.4849 0.8401 0.0004 29 1 0.3548 -4.7839 0.2371 30 1 1.6747 -6.8480 0.4366 31 1 4.1304 -6.7534 0.4129 32 1 6.1801 -3.8415 -0.4475 33 1 10.2829 -6.5425 1.6681 34 1 11.2614 -7.8116 4.1892 35 1 8.6026 -9.1046 4.6524 36 1 6.3588 -8.2972 4.1092 37 1 3.9489 -2.4827 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730151710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:20 Heat of formation + Delta-G solvation = -33.306804 kcal Electronic energy + Delta-G solvation = -25338.189477 eV Core-core repulsion = 21399.982004 eV Total energy + Delta-G solvation = -3938.207473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33795 -39.55359 -39.09448 -38.26585 -36.75170 -36.29946 -33.20403 -32.20224 -31.20619 -30.46039 -29.42691 -28.49616 -25.72585 -25.19706 -23.47087 -22.34816 -21.67813 -21.21768 -20.06582 -18.85111 -18.01284 -17.55140 -17.15836 -16.87767 -16.38775 -15.94914 -15.34535 -15.19054 -14.83919 -14.57397 -14.39146 -14.26536 -14.03706 -13.71665 -13.62690 -13.37205 -13.30950 -12.70685 -12.50328 -12.40135 -12.19264 -11.71893 -11.49966 -11.17346 -10.98943 -10.85244 -10.78481 -10.47677 -9.83517 -9.70326 -9.44888 -9.27767 -8.86109 -8.68031 -7.83766 -7.20062 -6.45550 -4.05644 -0.10084 0.78111 1.12390 2.10822 2.37498 2.41494 2.85866 3.11991 3.13653 3.16021 3.26795 3.62251 3.75245 3.95317 4.25410 4.50682 4.55099 4.64807 4.76665 4.99503 5.05738 5.12717 5.26542 5.32515 5.52142 5.55572 5.68857 5.80396 5.83609 5.86196 5.95400 6.04634 6.13932 6.26849 6.62352 6.70803 6.85323 6.99860 7.09375 7.15444 7.22733 7.34243 7.36022 7.69609 7.97532 8.99572 9.68696 10.72375 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.002723 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.914568 B =10282.189193 C =11173.227085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.142 3.858 11 C -0.165 4.165 12 C -0.086 4.086 13 C -0.140 4.140 14 C -0.055 4.055 15 C 0.022 3.978 16 C -0.073 4.073 17 O -0.214 6.214 18 C 0.162 3.838 19 C -0.172 4.172 20 C 0.175 3.825 21 O -0.493 6.493 22 C -0.188 4.188 23 C 0.006 3.994 24 C -0.271 4.271 25 C 0.406 3.594 26 O -0.396 6.396 27 C -0.195 4.195 28 H 0.270 0.730 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.399 0.601 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.636 -13.524 5.943 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.089 3.911 11 C -0.184 4.184 12 C -0.104 4.104 13 C -0.158 4.158 14 C -0.056 4.056 15 C 0.002 3.998 16 C -0.117 4.117 17 O -0.122 6.122 18 C 0.116 3.884 19 C -0.191 4.191 20 C 0.130 3.870 21 O -0.304 6.304 22 C -0.206 4.206 23 C -0.013 4.013 24 C -0.273 4.273 25 C 0.284 3.716 26 O -0.270 6.270 27 C -0.214 4.214 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.257 0.743 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.611 -13.667 5.521 22.965 hybrid contribution 0.885 1.206 0.399 1.548 sum 18.496 -12.461 5.920 23.074 Atomic orbital electron populations 1.70028 1.05935 1.27770 1.46019 1.25265 0.95831 0.98766 0.96535 0.85806 0.78738 0.79874 0.79172 1.19479 1.20260 1.19519 1.21226 0.91663 0.80880 1.53295 0.89249 1.84010 1.33921 1.11232 1.79005 1.19166 0.89867 0.88368 0.93696 1.20438 0.99854 0.90288 1.07826 1.20531 0.93368 0.96962 0.99562 1.20775 0.94407 0.95695 1.04967 1.18214 0.89179 0.94147 1.04017 1.21760 0.92878 0.92541 0.92576 1.21512 0.80987 1.05558 1.03606 1.84303 1.21691 1.54313 1.51869 1.19294 0.93862 0.87788 0.87488 1.20228 0.94551 1.01346 1.03005 1.18147 0.85105 0.91000 0.92747 1.84759 1.27051 1.57245 1.61368 1.21081 0.91786 1.04372 1.03393 1.20311 0.97484 0.91271 0.92210 1.21207 0.96223 1.05666 1.04190 1.20493 0.88176 0.80439 0.82443 1.90834 1.18662 1.58185 1.59346 1.21247 0.93753 0.97546 1.08899 0.91961 0.86211 0.86622 0.87480 0.83695 0.83820 0.74283 0.84136 0.84229 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.67 55.48 0.76 -24.40 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.88 9.48 30.89 0.29 -10.58 16 8 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 9 O -0.18 -5.01 9.76 0.02 0.00 -5.01 16 10 C 0.14 3.40 6.64 -39.18 -0.26 3.14 16 11 C -0.16 -3.48 9.99 -39.27 -0.39 -3.87 16 12 C -0.09 -1.59 10.02 -39.68 -0.40 -1.99 16 13 C -0.14 -2.56 6.94 -39.04 -0.27 -2.83 16 14 C -0.06 -1.03 5.42 -105.10 -0.57 -1.60 16 15 C 0.02 0.33 9.89 -36.98 -0.37 -0.03 16 16 C -0.07 -1.10 6.89 -36.88 -0.25 -1.36 16 17 O -0.21 -2.93 10.57 0.48 0.01 -2.93 16 18 C 0.16 1.99 7.28 -38.50 -0.28 1.71 16 19 C -0.17 -1.64 10.00 -39.21 -0.39 -2.03 16 20 C 0.18 1.45 6.69 -39.10 -0.26 1.19 16 21 O -0.49 -3.13 13.48 -18.92 -0.25 -3.39 16 22 C -0.19 -1.53 9.93 -39.79 -0.39 -1.92 16 23 C 0.01 0.06 10.04 -39.68 -0.40 -0.34 16 24 C -0.27 -3.49 6.34 -104.85 -0.66 -4.15 16 25 C 0.41 6.34 6.87 -32.20 -0.22 6.12 16 26 O -0.40 -7.09 13.93 5.05 0.07 -7.02 16 27 C -0.20 -4.17 8.91 -38.88 -0.35 -4.51 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 1.83 6.08 -52.49 -0.32 1.51 16 32 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.40 0.51 9.06 45.56 0.41 0.92 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -33.19 331.71 -6.86 -40.06 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -2.15 Total: 4.45 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -5.27 Total: -22.06 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.76 Total: -24.40 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.18 Total: -18.34 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.19 -6.86 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.750 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds