Wall clock time and date at job start Tue Mar 31 2020 13:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47019 * 239.99835 * 3 2 1 5 5 H 1.48497 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46772 * 119.99920 * 3 2 1 7 7 C 1.38654 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99957 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.35765 * 117.00153 * 185.09791 * 9 7 2 11 11 C 1.39060 * 119.98395 * 174.43298 * 10 9 7 12 12 C 1.38268 * 120.29842 * 180.02562 * 11 10 9 13 13 C 1.37940 * 120.25508 * 359.97438 * 12 11 10 14 14 C 1.39969 * 119.95653 * 0.02562 * 13 12 11 15 15 C 1.46999 * 120.14973 * 180.02562 * 14 13 12 16 16 C 1.35602 * 119.99948 * 322.80604 * 15 14 13 17 17 O 1.35368 * 126.23050 * 171.95680 * 16 15 14 18 18 C 1.35083 * 111.83867 * 179.97438 * 17 16 15 19 19 C 1.38949 * 131.36158 * 179.97438 * 18 17 16 20 20 C 1.38542 * 120.00292 * 180.02562 * 19 18 17 21 21 O 1.35737 * 119.70796 * 180.02562 * 20 19 18 22 22 C 1.39242 * 120.58147 * 0.02562 * 20 19 18 23 23 C 1.36614 * 120.15040 * 359.97438 * 22 20 19 24 24 C 1.39557 * 119.88654 * 0.04232 * 23 22 20 25 25 C 1.47207 * 126.22575 * 351.65393 * 16 15 14 26 26 O 1.21853 * 127.75504 * 359.96665 * 25 16 15 27 27 C 1.38501 * 119.97626 * 354.45506 * 10 9 7 28 28 H 0.96999 * 119.99597 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.85126 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.87149 * 179.70394 * 12 11 10 31 31 H 1.07999 * 120.01986 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.00662 * 142.80820 * 15 14 13 33 33 H 1.07999 * 119.99482 * 0.05924 * 19 18 17 34 34 H 0.96699 * 113.99217 * 90.00758 * 21 20 19 35 35 H 1.07998 * 119.92756 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.05618 * 180.02562 * 23 22 20 37 37 H 1.08005 * 120.13055 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1054 11 6 1.4336 -4.7352 0.2274 12 6 2.1760 -5.8965 0.3373 13 6 3.5543 -5.8440 0.3264 14 6 4.2058 -4.6112 0.2041 15 6 5.6745 -4.5503 0.1914 16 6 6.3945 -5.3842 0.9819 17 8 7.7385 -5.5442 0.9614 18 6 8.1507 -6.4506 1.8743 19 6 9.4188 -6.9194 2.1950 20 6 9.5747 -7.8696 3.1910 21 8 10.8163 -8.3230 3.4998 22 6 8.4690 -8.3637 3.8781 23 6 7.2153 -7.9133 3.5751 24 6 7.0433 -6.9565 2.5738 25 6 5.8574 -6.2757 2.0230 26 8 4.6935 -6.4201 2.3539 27 6 3.4532 -3.4377 0.0935 28 1 -0.4849 0.8401 0.0004 29 1 0.3548 -4.7839 0.2371 30 1 1.6747 -6.8480 0.4366 31 1 4.1304 -6.7534 0.4129 32 1 6.1801 -3.8415 -0.4475 33 1 10.2829 -6.5425 1.6681 34 1 11.2614 -7.8116 4.1892 35 1 8.6026 -9.1046 4.6524 36 1 6.3588 -8.2972 4.1092 37 1 3.9489 -2.4827 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730151710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:19 Heat of formation + Delta-G solvation = -55.326192 kcal Electronic energy + Delta-G solvation = -25339.144309 eV Core-core repulsion = 21399.982004 eV Total energy + Delta-G solvation = -3939.162305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.35516 -40.85653 -40.17388 -39.56615 -38.25797 -37.19205 -34.66967 -34.06671 -32.09123 -31.34331 -30.96731 -29.98601 -27.38805 -26.56331 -24.44390 -23.50025 -23.23017 -22.34063 -21.29782 -19.96128 -19.54551 -18.82934 -18.30288 -17.94202 -17.56119 -16.90414 -16.84999 -16.37526 -16.12057 -15.98668 -15.64005 -15.56587 -15.40181 -15.08002 -14.96055 -14.72711 -14.31479 -14.14861 -14.08850 -13.55635 -13.23004 -13.05579 -12.99029 -12.60851 -12.52327 -12.36345 -12.14384 -11.77964 -11.33948 -11.02911 -10.94690 -10.67691 -10.10551 -9.77460 -9.27508 -8.85574 -8.45992 -6.14797 -1.17943 -0.12828 0.20024 0.64788 0.81438 1.35659 1.40698 1.46455 1.51816 1.69319 2.18164 2.43481 2.54612 2.81468 3.10256 3.14252 3.39682 3.47884 3.55374 3.72817 3.98041 3.99713 4.14638 4.19729 4.24445 4.35472 4.48128 4.57474 4.69428 4.77419 4.90592 5.02129 5.08557 5.12164 5.13332 5.16037 5.38185 5.51983 5.60350 5.62767 5.85482 6.00878 6.07158 6.18348 6.74497 6.98216 7.77588 8.76912 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.002723 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.914568 B =10282.189193 C =11173.227085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.107 3.893 11 C -0.179 4.179 12 C -0.078 4.078 13 C -0.129 4.129 14 C -0.047 4.047 15 C 0.003 3.997 16 C -0.057 4.057 17 O -0.217 6.217 18 C 0.144 3.856 19 C -0.172 4.172 20 C 0.195 3.805 21 O -0.494 6.494 22 C -0.176 4.176 23 C 0.003 3.997 24 C -0.296 4.296 25 C 0.398 3.602 26 O -0.430 6.430 27 C -0.204 4.204 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.425 0.575 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.852 -15.506 7.124 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.136 6.136 10 C 0.057 3.943 11 C -0.198 4.198 12 C -0.096 4.096 13 C -0.148 4.148 14 C -0.048 4.048 15 C -0.017 4.017 16 C -0.101 4.101 17 O -0.125 6.125 18 C 0.098 3.902 19 C -0.190 4.190 20 C 0.149 3.851 21 O -0.310 6.310 22 C -0.194 4.194 23 C -0.015 4.015 24 C -0.298 4.298 25 C 0.279 3.721 26 O -0.308 6.308 27 C -0.223 4.223 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.288 0.712 35 H 0.189 0.811 36 H 0.169 0.831 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.897 -15.700 6.720 27.770 hybrid contribution -0.063 1.362 0.202 1.379 sum 21.834 -14.338 6.923 27.023 Atomic orbital electron populations 1.70182 1.08022 1.28845 1.48806 1.26572 0.96832 1.02690 0.95847 0.84677 0.77436 0.74339 0.79974 1.17870 1.19723 1.18316 1.21773 0.92541 0.81411 1.53400 0.87989 1.83973 1.35544 1.12354 1.81717 1.19680 0.91180 0.88205 0.95266 1.20656 1.00328 0.90382 1.08437 1.20912 0.93548 0.97394 0.97764 1.21127 0.94589 0.96294 1.02787 1.18417 0.91027 0.93223 1.02096 1.21686 0.91191 0.94281 0.94496 1.21541 0.81922 1.04159 1.02451 1.84290 1.20493 1.55082 1.52632 1.19609 0.94791 0.88125 0.87647 1.20521 0.93971 1.01319 1.03237 1.18202 0.86069 0.89323 0.91458 1.84711 1.26084 1.57640 1.62525 1.21409 0.90716 1.03968 1.03293 1.20549 0.98944 0.90543 0.91441 1.21151 0.94860 1.07535 1.06208 1.20934 0.88518 0.80334 0.82338 1.90801 1.20007 1.59489 1.60506 1.21295 0.93001 0.98609 1.09425 0.91853 0.86144 0.83084 0.85703 0.81128 0.82019 0.71215 0.81114 0.83132 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 3 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.42 -24.11 9.48 67.92 0.64 -23.46 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.81 9.76 -22.85 -0.22 -14.03 16 10 C 0.11 5.39 6.64 22.53 0.15 5.54 16 11 C -0.18 -7.84 9.99 22.47 0.22 -7.61 16 12 C -0.08 -2.86 10.02 22.21 0.22 -2.63 16 13 C -0.13 -4.65 6.94 22.62 0.16 -4.49 16 14 C -0.05 -1.76 5.42 -20.17 -0.11 -1.87 16 15 C 0.00 0.08 9.89 23.96 0.24 0.31 16 16 C -0.06 -1.65 6.89 24.02 0.17 -1.48 16 17 O -0.22 -5.57 10.57 -21.19 -0.22 -5.80 16 18 C 0.14 3.20 7.28 22.97 0.17 3.36 16 19 C -0.17 -2.66 10.00 22.51 0.23 -2.44 16 20 C 0.20 2.36 6.69 22.58 0.15 2.51 16 21 O -0.49 -3.76 13.48 -90.61 -1.22 -4.98 16 22 C -0.18 -2.09 9.93 22.13 0.22 -1.87 16 23 C 0.00 0.06 10.04 22.21 0.22 0.28 16 24 C -0.30 -7.06 6.34 -20.01 -0.13 -7.19 16 25 C 0.40 12.05 6.87 27.05 0.19 12.24 16 26 O -0.43 -15.22 13.93 -4.84 -0.07 -15.28 16 27 C -0.20 -9.02 8.91 22.72 0.20 -8.82 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 30 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.13 4.09 6.08 -2.91 -0.02 4.07 16 32 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.43 -1.18 9.06 -74.06 -0.67 -1.85 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.13 5.68 5.63 -2.91 -0.02 5.66 16 Total: -1.00 -77.26 331.71 4.48 -72.78 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.49 Total: 17.34 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.40 Total: -38.41 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.30 Total: -56.33 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.74 Total: -40.09 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.26 4.48 -72.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.457 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds