Wall clock time and date at job start Tue Mar 31 2020 13:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47227 * 30.00104 * 3 2 1 6 6 H 1.48502 * 109.47312 * 150.00247 * 3 2 1 7 7 C 1.38651 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00305 * 0.02562 * 7 2 1 9 9 O 1.34837 * 119.99546 * 179.97438 * 7 2 1 10 10 C 1.35764 * 116.99697 * 174.96001 * 9 7 2 11 11 C 1.39066 * 119.97680 * 185.70578 * 10 9 7 12 12 C 1.38273 * 120.29293 * 180.02562 * 11 10 9 13 13 C 1.37936 * 120.25774 * 359.97438 * 12 11 10 14 14 C 1.39975 * 119.95558 * 359.97438 * 13 12 11 15 15 C 1.47004 * 120.14697 * 179.97438 * 14 13 12 16 16 C 1.35595 * 120.00209 * 185.89788 * 15 14 13 17 17 O 1.35368 * 126.22577 * 354.80059 * 16 15 14 18 18 C 1.35088 * 111.83783 * 179.75266 * 17 16 15 19 19 C 1.38946 * 131.35703 * 179.58607 * 18 17 16 20 20 C 1.38537 * 120.00138 * 180.34565 * 19 18 17 21 21 O 1.35733 * 119.70974 * 180.25106 * 20 19 18 22 22 C 1.39247 * 120.58060 * 0.27636 * 20 19 18 23 23 C 1.36604 * 120.15005 * 359.97438 * 22 20 19 24 24 C 1.39561 * 119.89204 * 359.97438 * 23 22 20 25 25 C 1.47201 * 126.23048 * 174.77356 * 16 15 14 26 26 O 1.21851 * 127.75274 * 0.02958 * 25 16 15 27 27 C 1.38508 * 119.98059 * 5.97738 * 10 9 7 28 28 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.85707 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.86544 * 179.97438 * 12 11 10 31 31 H 1.08003 * 120.02114 * 180.02562 * 13 12 11 32 32 H 1.08003 * 120.00001 * 5.90568 * 15 14 13 33 33 H 1.07996 * 119.99627 * 0.62098 * 19 18 17 34 34 H 0.96704 * 113.99635 * 90.00232 * 21 20 19 35 35 H 1.07997 * 119.92621 * 179.97438 * 22 20 19 36 36 H 1.08003 * 120.05667 * 180.02562 * 23 22 20 37 37 H 1.08003 * 120.12494 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4056 0.1069 11 6 5.3571 -2.4697 0.2323 12 6 5.9917 -3.6934 0.3410 13 6 5.2573 -4.8609 0.3265 14 6 3.8641 -4.8087 0.2018 15 6 3.0773 -6.0504 0.1853 16 6 1.7436 -6.0049 -0.0551 17 8 0.9941 -4.8866 -0.1971 18 6 -0.3035 -5.1782 -0.4343 19 6 -1.4073 -4.3580 -0.6327 20 6 -2.6552 -4.9175 -0.8543 21 8 -3.7286 -4.1107 -1.0525 22 6 -2.8180 -6.3002 -0.8752 23 6 -1.7439 -7.1206 -0.6769 24 6 -0.4807 -6.5709 -0.4535 25 6 0.8474 -7.1623 -0.2096 26 8 1.1381 -8.3442 -0.1498 27 6 3.2246 -3.5706 0.0852 28 1 -0.4850 0.8400 0.0004 29 1 5.9386 -1.5597 0.2439 30 1 7.0665 -3.7351 0.4376 31 1 5.7568 -5.8146 0.4121 32 1 3.5615 -6.9990 0.3648 33 1 -1.2917 -3.2843 -0.6184 34 1 -3.8829 -3.8819 -1.9793 35 1 -3.7956 -6.7250 -1.0485 36 1 -1.8718 -8.1929 -0.6938 37 1 2.1505 -3.5226 -0.0169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730151712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:23 Heat of formation + Delta-G solvation = -37.500036 kcal Electronic energy + Delta-G solvation = -26174.873603 eV Core-core repulsion = 22236.484298 eV Total energy + Delta-G solvation = -3938.389305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12068 -39.36781 -39.01928 -38.19451 -36.88159 -36.13517 -33.18918 -32.36570 -30.87090 -30.26646 -29.31380 -28.94513 -25.62040 -25.10233 -23.23408 -22.40261 -21.46163 -20.64726 -20.41198 -18.67153 -17.97594 -17.43934 -16.99295 -16.59699 -16.23536 -15.70991 -15.39086 -15.04308 -14.93211 -14.51100 -14.17322 -14.00189 -13.90813 -13.74126 -13.71091 -13.17355 -13.09195 -12.77140 -12.31604 -12.24094 -12.13123 -11.90643 -11.69336 -11.06286 -10.93233 -10.86448 -10.74245 -10.27975 -9.84742 -9.80453 -9.41631 -8.98627 -8.90332 -8.58487 -7.79665 -7.42374 -6.46503 -4.13001 -0.02077 1.03889 1.35296 2.09020 2.21238 2.72956 3.01618 3.19304 3.21669 3.35887 3.52985 3.67918 4.11641 4.19223 4.40836 4.52443 4.70262 4.73632 4.97229 5.04852 5.07976 5.12121 5.29854 5.39474 5.55244 5.66820 5.80461 5.83025 6.00558 6.02797 6.09212 6.25585 6.31597 6.41155 6.45442 6.59545 6.94043 7.05240 7.09458 7.19123 7.33949 7.49568 7.52495 7.74141 7.97128 8.88562 9.48594 10.60782 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009566 B = 0.005386 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.433729 B = 5197.694122 C = 8096.257507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.215 6.215 10 C 0.150 3.850 11 C -0.174 4.174 12 C -0.086 4.086 13 C -0.174 4.174 14 C -0.052 4.052 15 C -0.001 4.001 16 C -0.058 4.058 17 O -0.193 6.193 18 C 0.165 3.835 19 C -0.160 4.160 20 C 0.181 3.819 21 O -0.490 6.490 22 C -0.191 4.191 23 C 0.001 3.999 24 C -0.283 4.283 25 C 0.420 3.580 26 O -0.436 6.436 27 C -0.190 4.190 28 H 0.279 0.721 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.399 0.601 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -10.770 -2.656 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.126 0.874 9 O -0.120 6.120 10 C 0.098 3.902 11 C -0.193 4.193 12 C -0.104 4.104 13 C -0.192 4.192 14 C -0.052 4.052 15 C -0.020 4.020 16 C -0.102 4.102 17 O -0.101 6.101 18 C 0.119 3.881 19 C -0.179 4.179 20 C 0.135 3.865 21 O -0.302 6.302 22 C -0.209 4.209 23 C -0.017 4.017 24 C -0.284 4.284 25 C 0.301 3.699 26 O -0.314 6.314 27 C -0.209 4.209 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.257 0.743 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.129 -10.795 -2.029 11.042 hybrid contribution 0.116 0.859 -0.497 0.999 sum -1.013 -9.937 -2.526 10.303 Atomic orbital electron populations 1.69623 1.05431 1.28493 1.47760 1.24435 0.95046 0.98667 0.95624 0.86215 0.80389 0.81578 0.78943 1.19908 1.20780 1.18390 1.20810 0.76777 0.96773 1.52303 0.87372 1.83591 1.22788 1.25340 1.80316 1.19020 0.91670 0.85578 0.93932 1.20438 0.91963 0.98207 1.08726 1.20581 0.98849 0.91593 0.99371 1.20833 0.92343 0.97978 1.08092 1.18595 0.93114 0.91348 1.02156 1.22067 0.88451 0.98931 0.92581 1.21779 0.93074 0.85306 1.10000 1.84673 1.15806 1.29935 1.79670 1.19496 0.84542 0.92284 0.91762 1.20638 0.88471 1.02159 1.06663 1.18198 0.85201 0.88609 0.94446 1.84757 1.44868 1.68211 1.32318 1.21042 0.99811 0.92471 1.07610 1.20175 0.89253 1.00183 0.92081 1.20992 0.96647 0.94871 1.15940 1.20536 0.87305 0.88263 0.73753 1.90680 1.82402 1.17526 1.40786 1.22162 1.02222 0.90855 1.05641 0.91032 0.86225 0.86301 0.86645 0.82215 0.82230 0.74264 0.84330 0.84620 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 13.96 55.48 0.77 -23.38 16 2 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 21.11 28.62 -169.99 -4.86 16.25 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.39 -10.71 9.94 30.88 0.31 -10.41 16 8 H 0.11 3.05 5.43 -52.49 -0.29 2.76 16 9 O -0.22 -5.54 8.58 -0.01 0.00 -5.54 16 10 C 0.15 3.38 6.64 -39.17 -0.26 3.12 16 11 C -0.17 -3.28 9.99 -39.26 -0.39 -3.67 16 12 C -0.09 -1.35 10.02 -39.68 -0.40 -1.75 16 13 C -0.17 -2.70 9.80 -39.04 -0.38 -3.09 16 14 C -0.05 -0.93 5.86 -105.10 -0.62 -1.54 16 15 C 0.00 -0.02 9.90 -36.98 -0.37 -0.38 16 16 C -0.06 -0.98 6.86 -36.89 -0.25 -1.23 16 17 O -0.19 -3.67 7.03 0.47 0.00 -3.67 16 18 C 0.17 2.85 7.28 -38.50 -0.28 2.57 16 19 C -0.16 -2.61 10.00 -39.21 -0.39 -3.00 16 20 C 0.18 2.41 6.69 -39.10 -0.26 2.15 16 21 O -0.49 -5.79 13.48 -18.90 -0.25 -6.05 16 22 C -0.19 -2.19 9.93 -39.80 -0.39 -2.58 16 23 C 0.00 0.02 10.04 -39.68 -0.40 -0.38 16 24 C -0.28 -4.38 6.34 -104.85 -0.67 -5.04 16 25 C 0.42 6.86 7.80 -32.21 -0.25 6.61 16 26 O -0.44 -7.47 18.06 5.05 0.09 -7.38 16 27 C -0.19 -4.09 8.42 -38.88 -0.33 -4.42 16 28 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.16 2.90 8.06 -52.49 -0.42 2.48 16 34 H 0.40 2.67 9.06 45.56 0.41 3.08 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.16 3.67 2.32 -52.54 -0.12 3.55 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -31.30 333.58 -6.74 -38.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -2.09 Total: 8.06 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -5.43 Total: -21.36 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.77 Total: -23.38 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.16 Total: -22.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.30 -6.74 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.540 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds