Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47227 * 30.00104 * 3 2 1 6 6 H 1.48502 * 109.47312 * 150.00247 * 3 2 1 7 7 C 1.38651 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00305 * 0.02562 * 7 2 1 9 9 O 1.34837 * 119.99546 * 179.97438 * 7 2 1 10 10 C 1.35764 * 116.99697 * 174.96001 * 9 7 2 11 11 C 1.39066 * 119.97680 * 185.70578 * 10 9 7 12 12 C 1.38273 * 120.29293 * 180.02562 * 11 10 9 13 13 C 1.37936 * 120.25774 * 359.97438 * 12 11 10 14 14 C 1.39975 * 119.95558 * 359.97438 * 13 12 11 15 15 C 1.47004 * 120.14697 * 179.97438 * 14 13 12 16 16 C 1.35595 * 120.00209 * 185.89788 * 15 14 13 17 17 O 1.35368 * 126.22577 * 354.80059 * 16 15 14 18 18 C 1.35088 * 111.83783 * 179.75266 * 17 16 15 19 19 C 1.38946 * 131.35703 * 179.58607 * 18 17 16 20 20 C 1.38537 * 120.00138 * 180.34565 * 19 18 17 21 21 O 1.35733 * 119.70974 * 180.25106 * 20 19 18 22 22 C 1.39247 * 120.58060 * 0.27636 * 20 19 18 23 23 C 1.36604 * 120.15005 * 359.97438 * 22 20 19 24 24 C 1.39561 * 119.89204 * 359.97438 * 23 22 20 25 25 C 1.47201 * 126.23048 * 174.77356 * 16 15 14 26 26 O 1.21851 * 127.75274 * 0.02958 * 25 16 15 27 27 C 1.38508 * 119.98059 * 5.97738 * 10 9 7 28 28 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.85707 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.86544 * 179.97438 * 12 11 10 31 31 H 1.08003 * 120.02114 * 180.02562 * 13 12 11 32 32 H 1.08003 * 120.00001 * 5.90568 * 15 14 13 33 33 H 1.07996 * 119.99627 * 0.62098 * 19 18 17 34 34 H 0.96704 * 113.99635 * 90.00232 * 21 20 19 35 35 H 1.07997 * 119.92621 * 179.97438 * 22 20 19 36 36 H 1.08003 * 120.05667 * 180.02562 * 23 22 20 37 37 H 1.08003 * 120.12494 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4056 0.1069 11 6 5.3571 -2.4697 0.2323 12 6 5.9917 -3.6934 0.3410 13 6 5.2573 -4.8609 0.3265 14 6 3.8641 -4.8087 0.2018 15 6 3.0773 -6.0504 0.1853 16 6 1.7436 -6.0049 -0.0551 17 8 0.9941 -4.8866 -0.1971 18 6 -0.3035 -5.1782 -0.4343 19 6 -1.4073 -4.3580 -0.6327 20 6 -2.6552 -4.9175 -0.8543 21 8 -3.7286 -4.1107 -1.0525 22 6 -2.8180 -6.3002 -0.8752 23 6 -1.7439 -7.1206 -0.6769 24 6 -0.4807 -6.5709 -0.4535 25 6 0.8474 -7.1623 -0.2096 26 8 1.1381 -8.3442 -0.1498 27 6 3.2246 -3.5706 0.0852 28 1 -0.4850 0.8400 0.0004 29 1 5.9386 -1.5597 0.2439 30 1 7.0665 -3.7351 0.4376 31 1 5.7568 -5.8146 0.4121 32 1 3.5615 -6.9990 0.3648 33 1 -1.2917 -3.2843 -0.6184 34 1 -3.8829 -3.8819 -1.9793 35 1 -3.7956 -6.7250 -1.0485 36 1 -1.8718 -8.1929 -0.6938 37 1 2.1505 -3.5226 -0.0169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730151712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = -58.188923 kcal Electronic energy + Delta-G solvation = -26175.770740 eV Core-core repulsion = 22236.484298 eV Total energy + Delta-G solvation = -3939.286443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.088 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.37981 -40.89770 -40.19891 -39.48600 -38.45975 -37.24299 -34.67448 -34.21159 -32.07544 -31.45044 -30.83272 -30.30592 -27.39162 -26.47961 -24.48410 -23.71319 -22.93331 -21.99194 -21.70199 -19.89230 -19.82981 -18.83308 -18.19809 -17.96370 -17.53526 -17.05791 -16.86949 -16.38394 -16.16319 -15.87138 -15.70804 -15.63888 -15.35839 -15.07159 -15.04135 -14.57169 -14.35293 -14.14623 -14.03384 -13.84086 -13.44866 -13.07317 -13.00845 -12.69956 -12.59621 -12.33890 -12.02077 -11.82435 -11.43680 -11.19985 -10.95844 -10.83781 -10.14930 -9.79356 -9.32285 -8.88649 -8.48357 -6.21200 -1.26721 -0.18247 0.19393 0.63745 0.84110 1.29593 1.33852 1.49254 1.53446 1.72072 2.26982 2.41320 2.45540 2.78611 3.02704 3.09470 3.17036 3.34999 3.48027 3.78170 3.95296 3.98628 4.09582 4.26393 4.31089 4.39379 4.43808 4.57308 4.76148 4.77015 4.91600 4.98938 5.05650 5.14924 5.17083 5.38395 5.42467 5.54767 5.63505 5.79743 5.87849 5.95345 6.09304 6.20023 6.68744 6.85290 7.57232 8.62622 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.009566 B = 0.005386 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.433729 B = 5197.694122 C = 8096.257507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.106 3.894 11 C -0.172 4.172 12 C -0.076 4.076 13 C -0.142 4.142 14 C -0.063 4.063 15 C 0.008 3.992 16 C -0.079 4.079 17 O -0.226 6.226 18 C 0.136 3.864 19 C -0.192 4.192 20 C 0.195 3.805 21 O -0.497 6.497 22 C -0.171 4.171 23 C 0.013 3.987 24 C -0.292 4.292 25 C 0.427 3.573 26 O -0.444 6.444 27 C -0.221 4.221 28 H 0.283 0.717 29 H 0.133 0.867 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.203 0.797 33 H 0.121 0.879 34 H 0.422 0.578 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -13.541 -2.709 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.096 0.904 9 O -0.153 6.153 10 C 0.058 3.942 11 C -0.191 4.191 12 C -0.094 4.094 13 C -0.160 4.160 14 C -0.063 4.063 15 C -0.011 4.011 16 C -0.123 4.123 17 O -0.135 6.135 18 C 0.090 3.910 19 C -0.211 4.211 20 C 0.150 3.850 21 O -0.312 6.312 22 C -0.189 4.189 23 C -0.005 4.005 24 C -0.294 4.294 25 C 0.310 3.690 26 O -0.324 6.324 27 C -0.240 4.240 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.188 0.812 31 H 0.186 0.814 32 H 0.220 0.780 33 H 0.139 0.861 34 H 0.285 0.715 35 H 0.200 0.800 36 H 0.188 0.812 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.588 -13.593 -2.101 13.767 hybrid contribution -0.307 1.460 -0.486 1.569 sum 0.281 -12.133 -2.587 12.409 Atomic orbital electron populations 1.69728 1.06679 1.29349 1.49963 1.25227 0.95914 1.01823 0.95621 0.85261 0.78867 0.77638 0.79211 1.19123 1.19358 1.18722 1.20690 0.78058 0.96093 1.52724 0.90357 1.83518 1.21307 1.27158 1.83337 1.19637 0.93413 0.85046 0.96137 1.20854 0.90271 1.00580 1.07422 1.21189 1.01308 0.89984 0.96892 1.21510 0.90974 1.00341 1.03167 1.18914 0.94774 0.90695 1.01923 1.22506 0.87794 0.99534 0.91237 1.22226 0.93913 0.85303 1.10808 1.84655 1.17006 1.31465 1.80370 1.19764 0.84139 0.93695 0.93359 1.20606 0.90361 1.00453 1.09703 1.18299 0.84052 0.89809 0.92860 1.84693 1.43730 1.68238 1.34587 1.21412 1.01351 0.90859 1.05264 1.20644 0.87873 1.02024 0.89926 1.21132 0.97683 0.93553 1.17004 1.20435 0.87468 0.87815 0.73296 1.90664 1.82573 1.17426 1.41712 1.22233 1.01587 0.92656 1.07475 0.90727 0.84901 0.81190 0.81428 0.78006 0.86119 0.71529 0.80034 0.81150 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.57 13.96 21.61 0.30 -54.27 16 2 C 0.01 0.75 5.49 84.83 0.47 1.21 16 3 Si 0.97 45.68 28.62 68.60 1.96 47.64 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.40 -23.92 9.94 67.92 0.68 -23.25 16 8 H 0.08 5.02 5.43 -2.91 -0.02 5.00 16 9 O -0.25 -13.49 8.58 -22.97 -0.20 -13.69 16 10 C 0.11 5.01 6.64 22.53 0.15 5.16 16 11 C -0.17 -6.28 9.99 22.48 0.22 -6.06 16 12 C -0.08 -2.07 10.02 22.21 0.22 -1.84 16 13 C -0.14 -3.79 9.80 22.62 0.22 -3.57 16 14 C -0.06 -2.19 5.86 -20.17 -0.12 -2.31 16 15 C 0.01 0.24 9.90 23.96 0.24 0.47 16 16 C -0.08 -2.78 6.86 24.01 0.16 -2.62 16 17 O -0.23 -9.53 7.03 -21.23 -0.15 -9.68 16 18 C 0.14 5.12 7.28 22.97 0.17 5.29 16 19 C -0.19 -6.95 10.00 22.51 0.23 -6.73 16 20 C 0.20 5.27 6.69 22.58 0.15 5.42 16 21 O -0.50 -11.64 13.48 -90.56 -1.22 -12.86 16 22 C -0.17 -3.49 9.93 22.13 0.22 -3.27 16 23 C 0.01 0.30 10.04 22.21 0.22 0.52 16 24 C -0.29 -9.14 6.34 -20.01 -0.13 -9.27 16 25 C 0.43 13.94 7.80 27.05 0.21 14.16 16 26 O -0.44 -14.60 18.06 -4.83 -0.09 -14.68 16 27 C -0.22 -10.08 8.42 22.72 0.19 -9.89 16 28 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.42 5.40 9.06 -74.05 -0.67 4.73 16 35 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.13 6.87 2.32 -3.73 -0.01 6.86 16 Total: -1.00 -77.14 333.58 4.61 -72.54 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.49 Total: 21.57 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.50 Total: -36.56 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.30 Total: -54.27 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -1.65 Total: -50.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.96 Total: 47.64 kcal Total: -77.14 4.61 -72.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730151712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.348 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds