Wall clock time and date at job start Tue Mar 31 2020 13:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46840 * 205.59360 * 3 2 1 5 5 C 1.35896 * 117.00196 * 180.02562 * 4 3 2 6 6 C 1.38797 * 120.02528 * 0.02562 * 5 4 3 7 7 C 1.38160 * 120.05555 * 179.97438 * 6 5 4 8 8 C 1.38198 * 120.10566 * 359.74743 * 7 6 5 9 9 C 1.38752 * 120.05608 * 0.50731 * 8 7 6 10 10 O 1.35899 * 120.02447 * 179.76855 * 9 8 7 11 11 S 1.52198 * 114.00040 * 269.72307 * 10 9 8 12 12 O 1.42105 * 104.27751 * 318.93045 * 11 10 9 13 13 O 1.42101 * 104.27671 * 191.07480 * 11 10 9 14 14 C 1.81395 * 104.44745 * 75.00388 * 11 10 9 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47435 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47387 * 119.99688 * 21 19 17 24 24 H 1.48499 * 109.46967 * 239.99702 * 21 19 17 25 25 C 1.38611 * 120.03411 * 179.97438 * 5 4 3 26 26 H 4.38444 * 5.44491 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47204 * 85.59394 * 3 2 1 28 28 H 1.09005 * 109.47231 * 325.58547 * 3 2 1 29 29 H 1.08003 * 119.97404 * 0.02562 * 6 5 4 30 30 H 1.07997 * 119.94737 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.97055 * 180.25568 * 8 7 6 32 32 H 1.09003 * 109.47393 * 299.99560 * 14 11 10 33 33 H 1.08994 * 109.47678 * 60.00177 * 14 11 10 34 34 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 35 35 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 36 36 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 37 37 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 38 38 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.04913 * 0.04082 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2160 0.5820 5 6 4.4689 1.3775 0.6585 6 6 5.3154 0.3860 0.1822 7 6 6.6851 0.5498 0.2592 8 6 7.2157 1.7030 0.8055 9 6 6.3737 2.6948 1.2878 10 8 6.8962 3.8264 1.8293 11 16 7.1356 3.7414 3.3299 12 8 5.9912 3.0630 3.8294 13 8 7.4207 5.0790 3.7157 14 6 8.6136 2.7027 3.4943 15 6 8.9602 2.5397 4.9756 16 6 10.2072 1.6642 5.1143 17 6 10.5490 1.5042 6.5733 18 1 9.9376 1.9791 7.3264 19 6 11.6415 0.7506 6.9469 20 7 12.3851 0.1711 6.0299 21 14 12.0647 0.5518 8.7553 22 1 11.0792 1.2971 9.5793 23 1 12.0253 -0.8878 9.1176 24 1 13.4262 1.0884 9.0070 25 6 4.9988 2.5329 1.2112 26 1 -1.0502 -0.0002 -0.0003 27 1 3.0094 -0.0781 -1.0245 28 1 3.0098 -0.8470 0.5808 29 1 4.9031 -0.5139 -0.2496 30 1 7.3422 -0.2226 -0.1123 31 1 8.2868 1.8305 0.8608 32 1 8.4199 1.7232 3.0570 33 1 9.4483 3.1737 2.9752 34 1 9.1538 3.5191 5.4133 35 1 8.1253 2.0685 5.4944 36 1 10.0141 0.6848 4.6765 37 1 11.0418 2.1358 4.5956 38 1 13.1535 -0.3593 6.2928 39 1 4.3418 3.3056 1.5822 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731672806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:25 Heat of formation + Delta-G solvation = -65.453919 kcal Electronic energy + Delta-G solvation = -24280.579023 eV Core-core repulsion = 20476.421498 eV Total energy + Delta-G solvation = -3804.157525 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34097 -39.97058 -37.29676 -37.01621 -35.95534 -34.73874 -33.89157 -32.24695 -31.20039 -30.12910 -28.02942 -27.80610 -24.00421 -23.76711 -22.92281 -21.02460 -20.34792 -18.99400 -18.88261 -17.79168 -17.38630 -16.98983 -16.56153 -16.46871 -16.39805 -15.90433 -15.25509 -14.82304 -14.48285 -14.31222 -14.08270 -13.62141 -13.44766 -12.94663 -12.78085 -12.62147 -12.38148 -12.22116 -12.07765 -11.97753 -11.87030 -11.72971 -11.48678 -11.28834 -11.05428 -10.95193 -10.86920 -10.64629 -10.41931 -9.98336 -9.47708 -9.28713 -9.12548 -8.69834 -8.42775 -6.07677 -4.10455 0.05401 0.89801 0.95572 1.75370 2.18716 2.29040 3.14048 3.21538 3.28435 3.36080 3.41073 3.74423 3.86523 4.10512 4.31457 4.41090 4.51921 4.55655 4.66564 4.74238 4.76247 4.99443 5.03091 5.07768 5.26243 5.29291 5.36353 5.67126 5.72210 5.82096 5.87387 5.94026 6.22007 6.30837 6.39879 6.83622 6.87969 7.04030 7.54760 7.64249 7.90525 8.30735 8.95887 9.54391 11.03601 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002719 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.269786 B =10293.983211 C =10939.574985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.203 4.203 3 C 0.172 3.828 4 O -0.305 6.305 5 C 0.147 3.853 6 C -0.196 4.196 7 C -0.057 4.057 8 C -0.164 4.164 9 C 0.114 3.886 10 O -0.669 6.669 11 S 2.581 3.419 12 O -0.952 6.952 13 O -0.930 6.930 14 C -0.630 4.630 15 C -0.103 4.103 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.125 4.125 26 H 0.225 0.775 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -1.617 -17.390 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.203 4.203 3 C 0.098 3.902 4 O -0.219 6.219 5 C 0.101 3.899 6 C -0.216 4.216 7 C -0.076 4.076 8 C -0.184 4.184 9 C 0.072 3.928 10 O -0.627 6.627 11 S 2.680 3.320 12 O -0.951 6.951 13 O -0.929 6.929 14 C -0.760 4.760 15 C -0.143 4.143 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.145 4.145 26 H 0.242 0.758 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.324 -0.960 -17.299 25.217 hybrid contribution 0.872 -0.588 0.886 1.375 sum -17.451 -1.548 -16.413 24.007 Atomic orbital electron populations 1.25055 0.95897 0.96819 0.99314 1.22196 0.93489 1.02905 1.01721 1.19337 0.85166 0.86528 0.99190 1.86128 1.18796 1.39535 1.77396 1.18473 0.82175 0.93708 0.95512 1.21457 0.94437 1.00028 1.05657 1.20839 0.94440 0.96276 0.96003 1.21400 1.01003 0.93728 1.02297 1.17582 0.91289 0.83084 1.00811 1.85748 1.82246 1.44865 1.49849 1.05907 0.77522 0.76080 0.72527 1.93632 1.46841 1.76749 1.77864 1.93615 1.86378 1.34253 1.78608 1.30810 1.19850 1.15683 1.09649 1.21499 1.02969 1.02827 0.86956 1.19076 0.90261 0.94103 0.97361 1.21286 1.11608 1.31204 0.92245 0.92280 1.25021 0.96185 0.95509 0.97712 1.69968 1.17408 1.33270 1.32779 0.86494 0.78337 0.77865 0.85089 1.19594 1.20948 1.20945 1.20366 0.93497 0.98260 1.02424 0.75800 0.89187 0.88996 0.84225 0.83696 0.83473 0.85037 0.84698 0.91376 0.91360 0.96056 0.96026 0.92956 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 19.25 29.55 0.57 -0.48 16 2 C -0.20 -1.69 13.73 -37.12 -0.51 -2.20 16 3 C 0.17 1.24 5.21 34.37 0.18 1.42 16 4 O -0.30 -3.24 10.09 -19.41 -0.20 -3.44 16 5 C 0.15 1.59 6.68 -39.24 -0.26 1.33 16 6 C -0.20 -1.63 9.04 -39.40 -0.36 -1.98 16 7 C -0.06 -0.48 10.04 -39.62 -0.40 -0.88 16 8 C -0.16 -1.73 8.46 -39.41 -0.33 -2.06 16 9 C 0.11 1.49 4.79 -39.24 -0.19 1.30 16 10 O -0.67 -9.52 10.05 -51.75 -0.52 -10.04 16 11 S 2.58 41.30 5.17 -107.50 -0.56 40.75 16 12 O -0.95 -16.92 16.26 -67.04 -1.09 -18.01 16 13 O -0.93 -17.63 18.09 -67.04 -1.21 -18.84 16 14 C -0.63 -9.81 5.47 37.16 0.20 -9.61 16 15 C -0.10 -2.08 5.16 -26.73 -0.14 -2.21 16 16 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.12 -1.60 8.99 -39.29 -0.35 -1.96 16 26 H 0.23 0.67 7.80 -54.08 -0.42 0.25 16 27 H 0.09 0.42 7.66 -51.93 -0.40 0.03 16 28 H 0.09 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.14 0.68 6.29 -52.48 -0.33 0.35 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.15 1.28 7.52 -52.49 -0.39 0.88 16 32 H 0.13 1.78 6.62 -51.92 -0.34 1.44 16 33 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 39 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -36.28 356.60 -9.41 -45.68 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.79 Total: -2.21 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.14 Total: -30.16 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -3.02 Total: -50.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 41.30 SS G_CDS: -0.56 Total: 40.75 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.28 -9.41 -45.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731672806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.771 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds