Wall clock time and date at job start Tue Mar 31 2020 13:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46840 * 205.59360 * 3 2 1 5 5 C 1.35896 * 117.00196 * 180.02562 * 4 3 2 6 6 C 1.38797 * 120.02528 * 0.02562 * 5 4 3 7 7 C 1.38160 * 120.05555 * 179.97438 * 6 5 4 8 8 C 1.38198 * 120.10566 * 359.74743 * 7 6 5 9 9 C 1.38752 * 120.05608 * 0.50731 * 8 7 6 10 10 O 1.35899 * 120.02447 * 179.76855 * 9 8 7 11 11 S 1.52198 * 114.00040 * 269.72307 * 10 9 8 12 12 O 1.42105 * 104.27751 * 318.93045 * 11 10 9 13 13 O 1.42101 * 104.27671 * 191.07480 * 11 10 9 14 14 C 1.81395 * 104.44745 * 75.00388 * 11 10 9 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47435 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47387 * 119.99688 * 21 19 17 24 24 H 1.48499 * 109.46967 * 239.99702 * 21 19 17 25 25 C 1.38611 * 120.03411 * 179.97438 * 5 4 3 26 26 H 4.38444 * 5.44491 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47204 * 85.59394 * 3 2 1 28 28 H 1.09005 * 109.47231 * 325.58547 * 3 2 1 29 29 H 1.08003 * 119.97404 * 0.02562 * 6 5 4 30 30 H 1.07997 * 119.94737 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.97055 * 180.25568 * 8 7 6 32 32 H 1.09003 * 109.47393 * 299.99560 * 14 11 10 33 33 H 1.08994 * 109.47678 * 60.00177 * 14 11 10 34 34 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 35 35 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 36 36 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 37 37 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 38 38 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.04913 * 0.04082 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2160 0.5820 5 6 4.4689 1.3775 0.6585 6 6 5.3154 0.3860 0.1822 7 6 6.6851 0.5498 0.2592 8 6 7.2157 1.7030 0.8055 9 6 6.3737 2.6948 1.2878 10 8 6.8962 3.8264 1.8293 11 16 7.1356 3.7414 3.3299 12 8 5.9912 3.0630 3.8294 13 8 7.4207 5.0790 3.7157 14 6 8.6136 2.7027 3.4943 15 6 8.9602 2.5397 4.9756 16 6 10.2072 1.6642 5.1143 17 6 10.5490 1.5042 6.5733 18 1 9.9376 1.9791 7.3264 19 6 11.6415 0.7506 6.9469 20 7 12.3851 0.1711 6.0299 21 14 12.0647 0.5518 8.7553 22 1 11.0792 1.2971 9.5793 23 1 12.0253 -0.8878 9.1176 24 1 13.4262 1.0884 9.0070 25 6 4.9988 2.5329 1.2112 26 1 -1.0502 -0.0002 -0.0003 27 1 3.0094 -0.0781 -1.0245 28 1 3.0098 -0.8470 0.5808 29 1 4.9031 -0.5139 -0.2496 30 1 7.3422 -0.2226 -0.1123 31 1 8.2868 1.8305 0.8608 32 1 8.4199 1.7232 3.0570 33 1 9.4483 3.1737 2.9752 34 1 9.1538 3.5191 5.4133 35 1 8.1253 2.0685 5.4944 36 1 10.0141 0.6848 4.6765 37 1 11.0418 2.1358 4.5956 38 1 13.1535 -0.3593 6.2928 39 1 4.3418 3.3056 1.5822 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731672806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:24 Heat of formation + Delta-G solvation = -89.440072 kcal Electronic energy + Delta-G solvation = -24281.619141 eV Core-core repulsion = 20476.421498 eV Total energy + Delta-G solvation = -3805.197643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.28062 -40.78266 -38.43718 -38.01866 -37.31808 -36.50284 -34.43757 -34.19454 -31.96816 -30.92766 -29.70961 -28.49470 -25.76923 -24.70136 -23.82655 -22.46658 -21.58525 -19.90230 -19.55761 -19.00648 -18.72338 -18.09388 -17.92443 -17.28085 -17.08941 -17.00078 -16.57599 -16.41736 -15.75094 -15.55305 -14.83511 -14.54541 -14.45376 -14.23010 -14.10906 -13.79368 -13.72088 -13.59448 -13.38866 -13.32896 -13.09044 -12.91079 -12.78156 -12.63631 -12.53365 -12.23787 -12.16803 -11.75793 -11.62369 -11.35920 -11.16594 -11.06558 -10.56317 -10.11660 -9.45798 -8.21773 -6.31816 -1.12703 -0.00253 0.18854 0.94612 1.27813 1.40283 1.41593 1.54288 1.76343 2.39886 2.42248 2.49070 2.55088 2.89331 3.12144 3.38527 3.56670 3.64982 3.75014 3.83247 3.93704 4.00640 4.12063 4.30297 4.31267 4.34420 4.38484 4.62180 4.86531 4.90280 4.93596 4.98191 5.05722 5.13334 5.21841 5.47116 5.53657 5.64716 5.80876 6.20405 6.21101 6.52842 6.83493 7.37198 8.89802 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002719 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.269786 B =10293.983211 C =10939.574985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.247 4.247 3 C 0.162 3.838 4 O -0.328 6.328 5 C 0.139 3.861 6 C -0.181 4.181 7 C -0.051 4.051 8 C -0.170 4.170 9 C 0.079 3.921 10 O -0.664 6.664 11 S 2.604 3.396 12 O -0.975 6.975 13 O -0.966 6.966 14 C -0.623 4.623 15 C -0.104 4.104 16 C 0.032 3.968 17 C -0.551 4.551 18 H 0.059 0.941 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.961 3.039 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.278 1.278 25 C -0.155 4.155 26 H 0.255 0.745 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.180 0.820 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.265 0.735 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.080 -3.431 -18.300 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.248 4.248 3 C 0.089 3.911 4 O -0.242 6.242 5 C 0.093 3.907 6 C -0.200 4.200 7 C -0.069 4.069 8 C -0.190 4.190 9 C 0.037 3.963 10 O -0.623 6.623 11 S 2.703 3.297 12 O -0.973 6.973 13 O -0.965 6.965 14 C -0.753 4.753 15 C -0.143 4.143 16 C -0.007 4.007 17 C -0.589 4.589 18 H 0.077 0.923 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.786 3.214 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.176 4.176 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.197 0.803 30 H 0.201 0.799 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.621 -2.762 -18.200 26.184 hybrid contribution 0.841 -0.113 1.033 1.337 sum -17.780 -2.875 -17.166 24.881 Atomic orbital electron populations 1.25940 0.96892 0.95294 0.98050 1.22805 0.94589 1.04331 1.03033 1.19702 0.84896 0.85700 1.00761 1.86092 1.18795 1.41470 1.77879 1.18585 0.82763 0.93689 0.95651 1.21934 0.94227 1.00249 1.03563 1.21361 0.95027 0.96057 0.94464 1.21768 1.01735 0.93640 1.01835 1.17974 0.91866 0.83596 1.02826 1.85704 1.82321 1.45814 1.48454 1.05147 0.76965 0.75006 0.72542 1.93591 1.47954 1.76931 1.78824 1.93562 1.86763 1.36209 1.79916 1.30697 1.20415 1.17275 1.06916 1.21322 1.00926 1.01799 0.90250 1.18969 0.91798 0.94194 0.95697 1.21753 1.11929 1.31295 0.93885 0.92288 1.25892 0.96114 0.95185 1.02273 1.70067 1.17924 1.33908 1.34864 0.85456 0.78189 0.78092 0.79683 1.18975 1.20163 1.20344 1.20470 0.93688 0.99314 1.04103 0.72903 0.86609 0.87249 0.80321 0.79890 0.81740 0.82734 0.82580 0.91437 0.91154 0.97292 0.97606 0.92638 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 19.25 74.32 1.43 -0.33 16 2 C -0.25 -3.85 13.73 31.13 0.43 -3.43 16 3 C 0.16 2.06 5.21 70.18 0.37 2.42 16 4 O -0.33 -6.81 10.09 -92.38 -0.93 -7.75 16 5 C 0.14 2.88 6.68 22.49 0.15 3.03 16 6 C -0.18 -2.42 9.04 22.39 0.20 -2.22 16 7 C -0.05 -0.68 10.04 22.24 0.22 -0.46 16 8 C -0.17 -3.21 8.46 22.38 0.19 -3.02 16 9 C 0.08 2.03 4.79 22.49 0.11 2.14 16 10 O -0.66 -19.09 10.05 -61.51 -0.62 -19.70 16 11 S 2.60 84.12 5.17 -56.49 -0.29 83.83 16 12 O -0.97 -35.35 16.26 -118.57 -1.93 -37.28 16 13 O -0.97 -37.40 18.09 -118.57 -2.15 -39.54 16 14 C -0.62 -18.87 5.47 71.98 0.39 -18.47 16 15 C -0.10 -4.17 5.16 30.59 0.16 -4.01 16 16 C 0.03 1.59 4.97 29.85 0.15 1.74 16 17 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 21 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.15 -4.07 8.99 22.46 0.20 -3.87 16 26 H 0.25 0.96 7.80 -4.41 -0.03 0.92 16 27 H 0.12 0.78 7.66 -2.39 -0.02 0.76 16 28 H 0.11 0.93 7.66 -2.38 -0.02 0.91 16 29 H 0.18 0.90 6.29 -2.91 -0.02 0.89 16 30 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.17 2.42 7.52 -2.91 -0.02 2.40 16 32 H 0.15 3.94 6.62 -2.39 -0.02 3.92 16 33 H 0.16 4.05 8.14 -2.39 -0.02 4.03 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -80.05 356.60 2.15 -77.90 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.06 Total: 7.43 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 4.69 Total: -56.44 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.28 Total: -54.27 kcal Atomic # 8 Polarization: -98.64 SS G_CDS: -5.62 Total: -104.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 84.12 SS G_CDS: -0.29 Total: 83.83 kcal Total: -80.05 2.15 -77.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731672806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.536 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds