Wall clock time and date at job start Tue Mar 31 2020 13:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 S 1.81400 * 109.47038 * 180.02562 * 15 13 12 17 17 C 1.76205 * 102.99763 * 180.02562 * 16 15 13 18 18 C 1.38921 * 120.03042 * 359.71736 * 17 16 15 19 19 C 1.38128 * 120.02573 * 179.83305 * 18 17 16 20 20 C 1.38697 * 120.17461 * 0.53176 * 19 18 17 21 21 C 1.38994 * 119.94967 * 359.62845 * 20 19 18 22 22 C 1.38647 * 119.89337 * 0.12891 * 21 20 19 23 23 O 1.36118 * 120.78371 * 180.25771 * 21 20 19 24 24 C 1.43165 * 116.73475 * 342.80814 * 23 21 20 25 25 C 1.53470 * 108.24751 * 46.19986 * 24 23 21 26 26 O 1.36238 * 119.30930 * 179.55218 * 20 19 18 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 32 32 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 33 33 H 1.08003 * 119.98510 * 0.08092 * 18 17 16 34 34 H 1.08004 * 119.91132 * 180.25948 * 19 18 17 35 35 H 1.07997 * 119.99166 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.70801 * 165.88161 * 24 23 21 37 37 H 1.08994 * 109.70970 * 286.51098 * 24 23 21 38 38 H 1.09002 * 109.71523 * 59.91149 * 25 24 23 39 39 H 1.08999 * 109.71244 * 180.54262 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 16 2.8913 0.6874 -4.8387 17 6 3.4774 -0.2341 -6.2215 18 6 3.6896 -1.6021 -6.1058 19 6 4.1458 -2.3250 -7.1909 20 6 4.4039 -1.6868 -8.3950 21 6 4.1959 -0.3177 -8.5133 22 6 3.7332 0.4074 -7.4259 23 8 4.4386 0.3249 -9.6884 24 6 5.2525 -0.3646 -10.6433 25 6 4.7525 -1.8120 -10.7448 26 8 4.8621 -2.4154 -9.4511 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 3.6884 -1.0398 -3.3633 32 1 2.0105 -1.3370 -3.8774 33 1 3.4940 -2.1013 -5.1683 34 1 4.3062 -3.3892 -7.1001 35 1 3.5714 1.4714 -7.5159 36 1 5.1705 0.1217 -11.6154 37 1 6.2916 -0.3569 -10.3143 38 1 3.7112 -1.8195 -11.0670 39 1 5.3633 -2.3626 -11.4603 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:40 Heat of formation + Delta-G solvation = -129.950594 kcal Electronic energy + Delta-G solvation = -23729.291978 eV Core-core repulsion = 19922.337667 eV Total energy + Delta-G solvation = -3806.954311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51252 -39.60401 -37.97027 -37.56416 -35.87496 -33.33957 -31.77000 -31.06277 -30.55991 -29.30855 -28.58997 -25.36300 -25.16335 -23.37569 -21.98378 -21.43638 -19.88883 -19.14753 -18.02463 -17.55718 -17.22404 -16.83974 -16.31760 -15.79634 -15.68792 -15.32042 -15.17956 -14.75133 -14.63787 -14.42585 -14.23304 -14.09630 -13.62940 -13.25299 -12.95060 -12.56335 -12.32419 -12.06714 -11.92316 -11.73382 -11.47992 -11.25927 -11.09919 -10.91831 -10.89505 -10.42176 -10.32518 -10.23322 -9.86781 -9.63664 -9.38253 -8.97350 -8.70568 -8.53734 -7.35892 -6.22420 -4.29886 0.88415 0.99913 1.16340 2.25789 2.65307 2.77836 2.90660 3.22680 3.27861 3.31385 3.33872 3.51644 3.81897 4.29169 4.29406 4.38440 4.47693 4.73965 4.84641 4.94993 4.96870 5.01612 5.10248 5.10725 5.17430 5.46417 5.54140 5.67081 5.84880 5.95469 6.16782 6.53129 6.57244 6.83331 6.84602 7.06102 7.07176 7.53411 7.66391 7.85261 8.07257 8.48369 8.79890 9.35561 10.84977 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.002126 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.054814 B =13167.644409 C =13637.698463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.349 6.349 13 C 0.471 3.529 14 O -0.501 6.501 15 C -0.128 4.128 16 S -0.020 6.020 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.090 4.090 20 C 0.039 3.961 21 C 0.070 3.930 22 C -0.095 4.095 23 O -0.306 6.306 24 C 0.021 3.979 25 C 0.020 3.980 26 O -0.308 6.308 27 H 0.101 0.899 28 H 0.038 0.962 29 H 0.017 0.983 30 H 0.267 0.733 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -5.507 -25.926 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.311 3.689 14 O -0.391 6.391 15 C -0.277 4.277 16 S 0.225 5.775 17 C -0.205 4.205 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.009 4.009 21 C 0.023 3.977 22 C -0.120 4.120 23 O -0.220 6.220 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.222 6.222 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.921 -3.835 -25.526 26.724 hybrid contribution 0.580 -1.749 0.445 1.896 sum 7.501 -5.584 -25.081 26.768 Atomic orbital electron populations 1.22176 0.97338 1.00232 1.01600 1.20745 0.91544 0.94031 0.77302 0.93310 1.21003 1.32706 1.13602 0.88753 0.91233 1.24897 0.94879 0.95118 0.99103 1.69894 1.35875 1.22481 1.24294 0.86247 0.78566 0.79863 0.81306 1.20355 1.20913 1.19579 1.86480 1.75698 1.43412 1.20979 1.22080 0.75572 0.85793 0.85420 1.90662 1.47967 1.16298 1.84145 1.23462 1.07456 1.02267 0.94512 1.86267 1.80662 1.10353 1.00267 1.21780 1.03777 0.96796 0.98187 1.21030 1.02676 0.92457 0.99376 1.20323 1.00092 1.00411 0.90180 1.18842 1.03512 0.88924 0.89582 1.18657 1.02374 0.89564 0.87109 1.19845 1.03222 1.00209 0.88690 1.86319 1.67686 1.43833 1.24186 1.23647 0.94908 0.93264 0.93694 1.23625 1.03236 0.94516 0.84166 1.86340 1.79062 1.42894 1.13940 0.88080 0.94331 0.96370 0.92305 0.85624 0.85706 0.84572 0.84364 0.84117 0.86001 0.90373 0.90455 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.33 37.16 0.35 -3.55 16 2 C 0.22 5.72 2.56 -27.89 -0.07 5.65 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.46 8.90 -34.44 -0.31 -14.77 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 O -0.35 -8.05 9.86 -39.25 -0.39 -8.43 16 13 C 0.47 9.50 7.95 36.01 0.29 9.79 16 14 O -0.50 -11.62 15.08 -18.75 -0.28 -11.90 16 15 C -0.13 -1.82 4.93 36.01 0.18 -1.64 16 16 S -0.02 -0.28 21.06 -107.50 -2.26 -2.54 16 17 C -0.09 -1.13 6.10 -39.11 -0.24 -1.37 16 18 C -0.13 -1.42 9.36 -39.37 -0.37 -1.79 16 19 C -0.09 -0.93 9.95 -39.45 -0.39 -1.32 16 20 C 0.04 0.43 6.49 -39.13 -0.25 0.17 16 21 C 0.07 0.80 6.49 -39.15 -0.25 0.55 16 22 C -0.09 -1.14 9.70 -39.21 -0.38 -1.52 16 23 O -0.31 -3.12 10.41 -32.89 -0.34 -3.47 16 24 C 0.02 0.12 7.26 37.40 0.27 0.40 16 25 C 0.02 0.12 7.26 37.40 0.27 0.39 16 26 O -0.31 -3.00 10.42 -33.28 -0.35 -3.35 16 27 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.13 1.50 7.74 -51.93 -0.40 1.10 16 32 H 0.12 1.46 7.75 -51.93 -0.40 1.05 16 33 H 0.14 1.25 5.87 -52.48 -0.31 0.94 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -32.40 346.28 -8.53 -40.93 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.73 Total: -0.50 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.01 Total: -7.42 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.36 Total: -27.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.26 Total: -2.54 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.40 -8.53 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.017 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds