Wall clock time and date at job start Tue Mar 31 2020 13:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34229 * 116.99848 * 89.99847 * 12 2 1 14 14 O 1.20826 * 120.00265 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99888 * 179.97438 * 13 12 2 16 16 S 1.81400 * 109.47038 * 180.02562 * 15 13 12 17 17 C 1.76205 * 102.99763 * 180.02562 * 16 15 13 18 18 C 1.38921 * 120.03042 * 359.71736 * 17 16 15 19 19 C 1.38128 * 120.02573 * 179.83305 * 18 17 16 20 20 C 1.38697 * 120.17461 * 0.53176 * 19 18 17 21 21 C 1.38994 * 119.94967 * 359.62845 * 20 19 18 22 22 C 1.38647 * 119.89337 * 0.12891 * 21 20 19 23 23 O 1.36118 * 120.78371 * 180.25771 * 21 20 19 24 24 C 1.43165 * 116.73475 * 342.80814 * 23 21 20 25 25 C 1.53470 * 108.24751 * 46.19986 * 24 23 21 26 26 O 1.36238 * 119.30930 * 179.55218 * 20 19 18 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47295 * 300.00299 * 15 13 12 32 32 H 1.08998 * 109.46637 * 60.00115 * 15 13 12 33 33 H 1.08003 * 119.98510 * 0.08092 * 18 17 16 34 34 H 1.08004 * 119.91132 * 180.25948 * 19 18 17 35 35 H 1.07997 * 119.99166 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.70801 * 165.88161 * 24 23 21 37 37 H 1.08994 * 109.70970 * 286.51098 * 24 23 21 38 38 H 1.09002 * 109.71523 * 59.91149 * 25 24 23 39 39 H 1.08999 * 109.71244 * 180.54262 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7193 -0.5768 -3.5493 16 16 2.8913 0.6874 -4.8387 17 6 3.4774 -0.2341 -6.2215 18 6 3.6896 -1.6021 -6.1058 19 6 4.1458 -2.3250 -7.1909 20 6 4.4039 -1.6868 -8.3950 21 6 4.1959 -0.3177 -8.5133 22 6 3.7332 0.4074 -7.4259 23 8 4.4386 0.3249 -9.6884 24 6 5.2525 -0.3646 -10.6433 25 6 4.7525 -1.8120 -10.7448 26 8 4.8621 -2.4154 -9.4511 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 3.6884 -1.0398 -3.3633 32 1 2.0105 -1.3370 -3.8774 33 1 3.4940 -2.1013 -5.1683 34 1 4.3062 -3.3892 -7.1001 35 1 3.5714 1.4714 -7.5159 36 1 5.1705 0.1217 -11.6154 37 1 6.2916 -0.3569 -10.3143 38 1 3.7112 -1.8195 -11.0670 39 1 5.3633 -2.3626 -11.4603 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:40 Heat of formation + Delta-G solvation = -148.545966 kcal Electronic energy + Delta-G solvation = -23730.098334 eV Core-core repulsion = 19922.337667 eV Total energy + Delta-G solvation = -3807.760667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.21819 -41.34590 -38.74592 -38.26457 -37.70941 -35.36405 -32.64010 -32.07376 -31.78056 -30.88394 -29.42050 -27.46030 -25.80354 -24.40202 -23.65504 -22.11089 -21.63865 -19.98162 -18.96424 -18.71240 -18.64471 -18.25113 -17.59936 -17.29056 -16.97387 -16.47570 -16.07076 -15.95859 -15.54858 -15.41471 -15.09470 -14.91843 -14.88048 -14.72783 -14.13297 -14.09275 -13.73949 -13.33270 -13.18096 -13.03214 -12.97741 -12.82321 -12.51115 -12.39055 -12.15471 -12.00988 -11.66065 -11.61448 -11.54372 -11.22300 -11.01214 -10.60977 -10.23128 -9.53148 -8.36787 -8.29123 -6.46140 0.03298 0.05042 0.17925 1.17465 1.22649 1.43215 1.44968 1.56566 1.93891 2.00012 2.30030 2.40642 2.51378 3.01933 3.25208 3.63170 3.74925 3.88442 3.93798 3.99126 4.05175 4.10458 4.18739 4.33598 4.51950 4.52162 4.59029 4.72039 4.77749 4.81317 4.86814 5.04541 5.11561 5.12643 5.39387 5.47583 5.60864 5.84800 5.88457 6.03204 6.34392 6.56970 6.83402 7.25023 8.78554 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.002126 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.054814 B =13167.644409 C =13637.698463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.261 1.261 12 O -0.353 6.353 13 C 0.465 3.535 14 O -0.537 6.537 15 C -0.111 4.111 16 S -0.062 6.062 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.093 4.093 20 C 0.037 3.963 21 C 0.062 3.938 22 C -0.108 4.108 23 O -0.323 6.323 24 C 0.013 3.987 25 C 0.014 3.986 26 O -0.319 6.319 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.024 0.976 30 H 0.271 0.729 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -7.809 -27.193 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.185 1.185 12 O -0.269 6.269 13 C 0.308 3.692 14 O -0.427 6.427 15 C -0.259 4.259 16 S 0.181 5.819 17 C -0.209 4.209 18 C -0.154 4.154 19 C -0.113 4.113 20 C -0.011 4.011 21 C 0.015 3.985 22 C -0.133 4.133 23 O -0.238 6.238 24 C -0.061 4.061 25 C -0.060 4.060 26 O -0.234 6.234 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.976 -6.148 -26.844 28.670 hybrid contribution 0.315 -1.002 0.602 1.211 sum 8.290 -7.150 -26.242 28.434 Atomic orbital electron populations 1.22000 0.96581 1.00612 1.00943 1.20430 0.92147 0.92191 0.78787 0.97256 1.21291 1.33471 1.14006 0.89728 0.91105 1.25854 0.94724 0.95709 1.02228 1.70018 1.36517 1.23655 1.25270 0.85159 0.78053 0.78991 0.77076 1.19816 1.20181 1.18495 1.86458 1.76079 1.43313 1.21088 1.23128 0.74409 0.85536 0.86100 1.90650 1.49337 1.18036 1.84719 1.23434 1.09389 1.02064 0.91005 1.86447 1.81772 1.11837 1.01809 1.21604 1.05004 0.97202 0.97061 1.21259 1.02006 0.91751 1.00349 1.20607 0.99466 1.01452 0.89745 1.19038 1.02829 0.88849 0.90377 1.18714 1.02415 0.89917 0.87472 1.19927 1.03789 1.00367 0.89192 1.86291 1.68375 1.44888 1.24259 1.24013 0.94447 0.93580 0.94105 1.23973 1.04297 0.94719 0.83039 1.86323 1.78767 1.43362 1.14922 0.90045 0.93260 0.95664 0.91976 0.82780 0.82536 0.82753 0.82235 0.84433 0.82795 0.90082 0.90152 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 9.33 71.98 0.67 -6.65 16 2 C 0.22 11.80 2.56 29.85 0.08 11.88 16 3 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 4 C -0.55 -30.55 8.90 25.60 0.23 -30.32 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 8 Si 0.98 42.35 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 O -0.35 -16.32 9.86 -51.40 -0.51 -16.83 16 13 C 0.47 18.83 7.95 71.24 0.57 19.40 16 14 O -0.54 -25.63 15.08 21.96 0.33 -25.30 16 15 C -0.11 -2.98 4.93 71.24 0.35 -2.63 16 16 S -0.06 -1.76 21.06 -56.49 -1.19 -2.95 16 17 C -0.10 -2.27 6.10 22.58 0.14 -2.13 16 18 C -0.13 -2.55 9.36 22.41 0.21 -2.34 16 19 C -0.09 -1.72 9.95 22.35 0.22 -1.49 16 20 C 0.04 0.75 6.49 22.56 0.15 0.89 16 21 C 0.06 1.37 6.49 22.55 0.15 1.51 16 22 C -0.11 -2.58 9.70 22.51 0.22 -2.37 16 23 O -0.32 -6.28 10.41 -82.67 -0.86 -7.14 16 24 C 0.01 0.13 7.26 72.14 0.52 0.65 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 O -0.32 -5.50 10.42 -84.05 -0.88 -6.38 16 27 H 0.08 4.47 6.07 -2.39 -0.01 4.46 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.15 3.28 7.74 -2.39 -0.02 3.27 16 32 H 0.16 3.23 7.75 -2.39 -0.02 3.21 16 33 H 0.15 2.36 5.87 -2.91 -0.02 2.34 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.15 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 39 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -71.94 346.28 4.72 -67.22 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.08 Total: 10.82 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.47 Total: -11.70 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.24 Total: -52.13 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.91 Total: -55.65 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -1.19 Total: -2.95 kcal Total: -71.94 4.72 -67.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.323 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds