Wall clock time and date at job start Tue Mar 31 2020 13:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47069 * 2 1 4 4 C 1.50702 * 109.47366 * 239.99706 * 2 1 3 5 5 H 1.08000 * 119.99959 * 239.99634 * 4 2 1 6 6 C 1.37874 * 119.99628 * 59.99879 * 4 2 1 7 7 N 1.31517 * 120.00302 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47082 * 89.99950 * 8 6 4 10 10 H 1.48502 * 109.47628 * 210.00127 * 8 6 4 11 11 H 1.48500 * 109.47384 * 330.00422 * 8 6 4 12 12 O 1.45199 * 109.47258 * 119.99472 * 2 1 3 13 13 C 1.34230 * 117.00220 * 270.00748 * 12 2 1 14 14 O 1.20824 * 119.99818 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99716 * 179.97438 * 13 12 2 16 16 S 1.81401 * 109.46760 * 179.97438 * 15 13 12 17 17 C 1.76201 * 102.99769 * 179.97438 * 16 15 13 18 18 C 1.38917 * 120.02939 * 359.97438 * 17 16 15 19 19 C 1.38133 * 120.02526 * 179.74853 * 18 17 16 20 20 C 1.38709 * 120.17343 * 0.22826 * 19 18 17 21 21 C 1.38987 * 119.95112 * 359.96209 * 20 19 18 22 22 C 1.38647 * 119.89154 * 0.11734 * 21 20 19 23 23 O 1.36112 * 120.78176 * 180.20305 * 21 20 19 24 24 C 1.43169 * 116.71992 * 342.71316 * 23 21 20 25 25 C 1.53472 * 108.22951 * 46.28488 * 24 23 21 26 26 O 1.36242 * 119.30559 * 179.82768 * 20 19 18 27 27 H 1.08990 * 109.47408 * 300.00127 * 1 2 3 28 28 H 1.09001 * 109.47122 * 60.00900 * 1 2 3 29 29 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99715 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47065 * 59.99756 * 15 13 12 32 32 H 1.08998 * 109.47340 * 299.99540 * 15 13 12 33 33 H 1.08002 * 119.99034 * 0.03233 * 18 17 16 34 34 H 1.08003 * 119.91172 * 180.24464 * 19 18 17 35 35 H 1.08003 * 119.99443 * 179.88465 * 22 21 20 36 36 H 1.09004 * 109.71434 * 286.60270 * 24 23 21 37 37 H 1.08999 * 109.71513 * 165.96698 * 24 23 21 38 38 H 1.08998 * 109.70758 * 180.54029 * 25 24 23 39 39 H 1.09003 * 109.74324 * 59.93114 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1618 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2503 15 6 2.7182 -0.5771 3.5496 16 16 2.8903 0.6872 4.8390 17 6 3.4751 -0.2345 6.2222 18 6 3.6804 -1.6037 6.1086 19 6 4.1438 -2.3254 7.1914 20 6 4.4010 -1.6873 8.3959 21 6 4.1930 -0.3182 8.5142 22 6 3.7263 0.4062 7.4280 23 8 4.4438 0.3258 9.6868 24 6 4.5516 -0.4896 10.8587 25 6 5.4536 -1.6868 10.5293 26 8 4.8543 -2.4168 9.4535 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7095 1.1617 -3.4844 31 1 3.6870 -1.0407 3.3641 32 1 2.0087 -1.3368 3.8775 33 1 3.4819 -2.1035 5.1719 34 1 4.3065 -3.3891 7.0999 35 1 3.5623 1.4698 7.5186 36 1 3.5634 -0.8437 11.1524 37 1 4.9914 0.0897 11.6705 38 1 5.5446 -2.3302 11.4044 39 1 6.4399 -1.3330 10.2290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:42 Heat of formation + Delta-G solvation = -148.547561 kcal Electronic energy + Delta-G solvation = -23730.184032 eV Core-core repulsion = 19922.423296 eV Total energy + Delta-G solvation = -3807.760736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21856 -41.34618 -38.74555 -38.26498 -37.70956 -35.36345 -32.64010 -32.07363 -31.77962 -30.88384 -29.42064 -27.46066 -25.80393 -24.40242 -23.65538 -22.11073 -21.63845 -19.98179 -18.96445 -18.71311 -18.64339 -18.25129 -17.60012 -17.29567 -16.96413 -16.47840 -16.07351 -15.96026 -15.55811 -15.40993 -15.09215 -14.91398 -14.86626 -14.72352 -14.25933 -13.95179 -13.76692 -13.35820 -13.15886 -13.02428 -12.99858 -12.79391 -12.50713 -12.41033 -12.16434 -12.00970 -11.65299 -11.61676 -11.53933 -11.22298 -11.01930 -10.60457 -10.23075 -9.53235 -8.36743 -8.29109 -6.46166 0.03148 0.05265 0.17860 1.17474 1.22668 1.43256 1.45151 1.56325 1.93946 1.99981 2.30014 2.40626 2.51391 3.01874 3.25230 3.63177 3.74933 3.88433 3.93757 3.99111 4.05171 4.10465 4.18727 4.33563 4.51964 4.52169 4.59039 4.72029 4.77718 4.81276 4.86808 5.04532 5.11527 5.12614 5.39383 5.47556 5.60889 5.84811 5.88468 6.03188 6.34400 6.56950 6.83394 7.25028 8.78531 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.035207 B = 0.002128 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.098946 B =13153.380026 C =13652.147173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.264 1.264 12 O -0.353 6.353 13 C 0.465 3.535 14 O -0.537 6.537 15 C -0.111 4.111 16 S -0.062 6.062 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.093 4.093 20 C 0.037 3.963 21 C 0.062 3.938 22 C -0.108 4.108 23 O -0.323 6.323 24 C 0.013 3.987 25 C 0.014 3.986 26 O -0.319 6.319 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 -7.813 27.197 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.028 0.972 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.188 1.188 12 O -0.269 6.269 13 C 0.308 3.692 14 O -0.427 6.427 15 C -0.259 4.259 16 S 0.181 5.819 17 C -0.209 4.209 18 C -0.154 4.154 19 C -0.113 4.113 20 C -0.011 4.011 21 C 0.015 3.985 22 C -0.133 4.133 23 O -0.238 6.238 24 C -0.061 4.061 25 C -0.060 4.060 26 O -0.234 6.234 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.962 -6.147 26.847 28.669 hybrid contribution 0.306 -1.013 -0.603 1.218 sum 8.267 -7.160 26.244 28.432 Atomic orbital electron populations 1.22000 0.96588 1.00609 1.00949 1.20431 0.92137 0.92200 0.78787 0.97246 1.21290 1.33483 1.13985 0.89730 0.91112 1.25854 0.94757 0.95677 1.02231 1.70022 1.36588 1.23594 1.25262 0.85157 0.79050 0.78049 0.77003 1.19174 1.20482 1.18841 1.86456 1.76079 1.43318 1.21088 1.23128 0.74405 0.85538 0.86102 1.90649 1.49323 1.18039 1.84725 1.23434 1.09399 1.02064 0.90994 1.86446 1.81803 1.11830 1.01785 1.21603 1.05070 0.97132 0.97076 1.21260 1.02070 0.91683 1.00343 1.20609 1.00199 1.01676 0.88791 1.19041 1.02411 0.89598 0.90035 1.18710 1.01489 0.90660 0.87668 1.19932 1.02595 1.00671 0.90073 1.86293 1.87137 1.35957 1.14427 1.24014 1.01828 0.93897 0.86396 1.23970 0.95965 0.95579 0.90525 1.86319 1.74617 1.34828 1.27606 0.95653 0.90047 0.93274 0.91980 0.82790 0.82526 0.82751 0.82234 0.84433 0.90042 0.82802 0.82636 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 9.33 71.98 0.67 -6.65 16 2 C 0.22 11.80 2.56 29.85 0.08 11.88 16 3 H 0.01 0.59 7.16 -2.39 -0.02 0.58 16 4 C -0.55 -30.55 8.90 25.60 0.23 -30.32 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 6 C 0.01 0.80 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 8 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 O -0.35 -16.32 9.86 -51.42 -0.51 -16.83 16 13 C 0.47 18.83 7.95 71.24 0.57 19.40 16 14 O -0.54 -25.63 15.08 21.97 0.33 -25.29 16 15 C -0.11 -2.98 4.93 71.24 0.35 -2.63 16 16 S -0.06 -1.76 21.06 -56.49 -1.19 -2.95 16 17 C -0.10 -2.27 6.10 22.58 0.14 -2.14 16 18 C -0.13 -2.55 9.36 22.41 0.21 -2.34 16 19 C -0.09 -1.72 9.95 22.36 0.22 -1.49 16 20 C 0.04 0.75 6.50 22.56 0.15 0.89 16 21 C 0.06 1.37 6.49 22.55 0.15 1.51 16 22 C -0.11 -2.58 9.70 22.51 0.22 -2.36 16 23 O -0.32 -6.28 10.42 -82.60 -0.86 -7.14 16 24 C 0.01 0.13 7.26 72.14 0.52 0.65 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 O -0.32 -5.50 10.42 -84.09 -0.88 -6.38 16 27 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 4.47 6.07 -2.39 -0.01 4.46 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.15 3.29 7.75 -2.39 -0.02 3.27 16 32 H 0.16 3.23 7.74 -2.39 -0.02 3.21 16 33 H 0.15 2.36 5.87 -2.91 -0.02 2.34 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -71.93 346.28 4.72 -67.22 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.08 Total: 10.83 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.47 Total: -11.71 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.24 Total: -52.13 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.91 Total: -55.65 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -1.19 Total: -2.95 kcal Total: -71.93 4.72 -67.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.329 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds