Wall clock time and date at job start Tue Mar 31 2020 14:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48501 * 109.46811 * 269.99316 * 3 2 1 5 5 H 1.48499 * 109.47286 * 29.99126 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99661 * 3 2 1 7 7 C 1.38797 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00078 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47527 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00263 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00048 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47229 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47065 * 180.02562 * 15 14 13 17 17 C 1.38275 * 119.92941 * 270.22565 * 16 15 14 18 18 C 1.38122 * 120.07058 * 180.27615 * 17 16 15 19 19 C 1.38861 * 119.92666 * 359.49882 * 18 17 16 20 20 N 1.39954 * 120.06968 * 180.27430 * 19 18 17 21 21 C 1.34775 * 119.99961 * 144.90704 * 20 19 18 22 22 O 1.21505 * 120.00129 * 4.62287 * 21 20 19 23 23 O 1.34658 * 119.99866 * 184.61998 * 21 20 19 24 24 C 1.38872 * 119.86176 * 0.24691 * 19 18 17 25 25 C 1.38110 * 119.92673 * 0.02562 * 24 19 18 26 26 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.47367 * 59.99986 * 10 9 7 28 28 H 1.08997 * 109.47191 * 300.00332 * 10 9 7 29 29 H 0.97000 * 119.99774 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.46788 * 60.00302 * 14 13 11 31 31 H 1.08997 * 109.47471 * 300.00396 * 14 13 11 32 32 H 1.08992 * 109.47408 * 60.00148 * 15 14 13 33 33 H 1.09007 * 109.46987 * 299.99926 * 15 14 13 34 34 H 1.08000 * 119.96865 * 0.03190 * 17 16 15 35 35 H 1.07993 * 120.03570 * 179.77257 * 18 17 16 36 36 H 0.97001 * 119.99679 * 324.91087 * 20 19 18 37 37 H 0.96703 * 116.99891 * 180.02562 * 23 21 20 38 38 H 1.07997 * 120.02979 * 180.02562 * 24 19 18 39 39 H 1.08008 * 119.95823 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0025 13 7 6.0456 -4.4948 0.0016 14 6 7.4906 -4.7359 0.0021 15 6 7.7563 -6.2426 0.0007 16 6 9.2427 -6.4906 0.0020 17 6 9.9252 -6.5981 -1.1958 18 6 11.2866 -6.8311 -1.1982 19 6 11.9717 -6.9469 0.0041 20 7 13.3522 -7.1772 0.0053 21 6 14.1263 -6.6273 0.9617 22 8 13.6171 -6.0015 1.8702 23 8 15.4642 -6.7714 0.9104 24 6 11.2843 -6.8331 1.2054 25 6 9.9220 -6.6058 1.2009 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4315 -0.8894 28 1 3.6433 -3.4318 0.8906 29 1 5.4290 -5.2435 0.0001 30 1 7.9331 -4.2894 0.8927 31 1 7.9340 -4.2883 -0.8873 32 1 7.3139 -6.6888 -0.8899 33 1 7.3128 -6.6906 0.8901 34 1 9.3926 -6.5038 -2.1306 35 1 11.8185 -6.9186 -2.1340 36 1 13.7517 -7.7326 -0.6824 37 1 15.9776 -6.3595 1.6188 38 1 11.8145 -6.9224 2.1420 39 1 9.3868 -6.5177 2.1349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739091836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:20 Heat of formation + Delta-G solvation = -100.710591 kcal Electronic energy + Delta-G solvation = -22877.131742 eV Core-core repulsion = 19103.738124 eV Total energy + Delta-G solvation = -3773.393618 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30346 -39.70964 -39.11664 -36.94938 -35.92261 -34.79737 -32.42829 -32.15079 -31.32319 -29.69534 -27.64448 -25.60459 -24.27736 -23.35304 -22.54773 -21.17124 -20.42471 -19.64626 -18.07459 -17.86306 -17.37965 -16.66901 -16.45680 -16.06017 -15.82066 -15.44790 -15.08631 -14.94193 -14.26157 -14.15331 -14.04175 -13.77434 -13.68587 -13.49973 -13.15910 -12.78565 -12.41447 -12.23027 -12.09627 -11.97515 -11.70178 -11.33144 -11.25163 -11.06463 -10.99260 -10.64892 -10.57963 -9.84398 -9.51332 -9.29187 -9.00432 -8.93885 -8.53229 -8.48118 -6.90196 -6.27711 -3.99263 0.79925 1.05330 1.74032 2.22862 2.78785 3.00625 3.29110 3.34677 3.42875 3.52450 3.68792 3.96810 4.34655 4.44988 4.54361 4.64144 4.75211 4.81733 4.86998 5.03267 5.08038 5.11432 5.21876 5.32884 5.37603 5.63421 5.71599 5.80152 5.83630 5.89000 5.90776 5.93556 6.03087 6.13309 6.30198 6.53760 6.62341 6.71828 7.63122 7.75157 7.95369 8.42749 8.51958 9.18628 10.81464 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.001782 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.660842 B =15711.405467 C =16235.589591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.126 3.874 15 C -0.091 4.091 16 C -0.088 4.088 17 C -0.093 4.093 18 C -0.136 4.136 19 C 0.147 3.853 20 N -0.649 5.649 21 C 0.664 3.336 22 O -0.557 6.557 23 O -0.524 6.524 24 C -0.116 4.116 25 C -0.093 4.093 26 H 0.270 0.730 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.400 0.600 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.418 0.582 37 H 0.434 0.566 38 H 0.141 0.859 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.259 -21.311 -1.071 34.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.394 6.394 13 N -0.393 5.393 14 C 0.002 3.998 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.112 4.112 18 C -0.157 4.157 19 C 0.054 3.946 20 N -0.301 5.301 21 C 0.416 3.584 22 O -0.445 6.445 23 O -0.334 6.334 24 C -0.136 4.136 25 C -0.112 4.112 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.233 0.767 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.254 0.746 37 H 0.295 0.705 38 H 0.158 0.842 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 28.055 -19.492 -0.912 34.174 hybrid contribution -0.456 -0.691 0.051 0.830 sum 27.598 -20.183 -0.861 34.202 Atomic orbital electron populations 1.69942 1.05909 1.27744 1.48117 1.24713 0.94452 0.98965 0.93179 0.86734 0.81918 0.83269 0.79935 1.19213 1.19952 1.15904 1.22322 0.88300 0.97535 1.58741 0.89383 1.84808 1.09231 1.00153 1.97424 1.23281 0.94036 1.04332 1.05811 1.20284 0.90576 0.82310 0.75292 1.90709 1.58802 1.42227 1.47613 1.45968 1.07437 1.08085 1.77795 1.21260 0.81383 0.94346 1.02813 1.20784 0.92159 0.96007 1.03898 1.19730 0.95384 1.00549 0.93216 1.20873 0.93293 0.99001 0.98015 1.20836 0.95008 1.03603 0.96203 1.17466 0.80253 1.02278 0.94563 1.41831 1.05339 1.52267 1.30669 1.17727 0.80666 0.78059 0.81899 1.91099 1.73902 1.44403 1.35095 1.84161 1.17717 1.75509 1.56042 1.21291 0.94073 1.00471 0.97749 1.21012 0.93563 0.98664 0.97967 0.91961 0.88484 0.88444 0.76654 0.91388 0.91436 0.90050 0.90045 0.85137 0.85380 0.74593 0.70504 0.84161 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.94 27.74 -169.99 -4.72 17.23 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 12 O -0.52 -11.43 15.86 5.55 0.09 -11.35 16 13 N -0.74 -9.14 5.56 -60.30 -0.33 -9.47 16 14 C 0.13 1.39 5.66 -4.05 -0.02 1.36 16 15 C -0.09 -0.67 5.45 -27.88 -0.15 -0.82 16 16 C -0.09 -0.71 5.14 -104.59 -0.54 -1.25 16 17 C -0.09 -0.69 9.69 -39.61 -0.38 -1.07 16 18 C -0.14 -0.95 9.97 -39.39 -0.39 -1.34 16 19 C 0.15 1.20 6.30 -83.68 -0.53 0.67 16 20 N -0.65 -4.17 5.34 -14.27 -0.08 -4.24 16 21 C 0.66 5.25 8.97 54.05 0.48 5.73 16 22 O -0.56 -6.42 14.56 -19.27 -0.28 -6.70 16 23 O -0.52 -2.43 13.48 -40.37 -0.54 -2.97 16 24 C -0.12 -1.09 8.70 -39.39 -0.34 -1.43 16 25 C -0.09 -0.81 9.69 -39.61 -0.38 -1.20 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.42 1.41 8.93 -40.82 -0.36 1.05 16 37 H 0.43 0.23 9.11 45.56 0.42 0.65 16 38 H 0.14 1.44 6.22 -52.49 -0.33 1.11 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -38.36 357.10 -7.61 -45.96 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.00 Total: 1.89 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.91 Total: -4.22 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.36 Total: -39.58 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.74 Total: -21.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.36 -7.61 -45.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.747 kcal (2) G-P(sol) polarization free energy of solvation -38.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds