Wall clock time and date at job start Tue Mar 31 2020 14:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48501 * 109.46811 * 269.99316 * 3 2 1 5 5 H 1.48499 * 109.47286 * 29.99126 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99661 * 3 2 1 7 7 C 1.38797 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00078 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47527 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00263 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00048 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47229 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47065 * 180.02562 * 15 14 13 17 17 C 1.38275 * 119.92941 * 270.22565 * 16 15 14 18 18 C 1.38122 * 120.07058 * 180.27615 * 17 16 15 19 19 C 1.38861 * 119.92666 * 359.49882 * 18 17 16 20 20 N 1.39954 * 120.06968 * 180.27430 * 19 18 17 21 21 C 1.34775 * 119.99961 * 144.90704 * 20 19 18 22 22 O 1.21505 * 120.00129 * 4.62287 * 21 20 19 23 23 O 1.34658 * 119.99866 * 184.61998 * 21 20 19 24 24 C 1.38872 * 119.86176 * 0.24691 * 19 18 17 25 25 C 1.38110 * 119.92673 * 0.02562 * 24 19 18 26 26 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.47367 * 59.99986 * 10 9 7 28 28 H 1.08997 * 109.47191 * 300.00332 * 10 9 7 29 29 H 0.97000 * 119.99774 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.46788 * 60.00302 * 14 13 11 31 31 H 1.08997 * 109.47471 * 300.00396 * 14 13 11 32 32 H 1.08992 * 109.47408 * 60.00148 * 15 14 13 33 33 H 1.09007 * 109.46987 * 299.99926 * 15 14 13 34 34 H 1.08000 * 119.96865 * 0.03190 * 17 16 15 35 35 H 1.07993 * 120.03570 * 179.77257 * 18 17 16 36 36 H 0.97001 * 119.99679 * 324.91087 * 20 19 18 37 37 H 0.96703 * 116.99891 * 180.02562 * 23 21 20 38 38 H 1.07997 * 120.02979 * 180.02562 * 24 19 18 39 39 H 1.08008 * 119.95823 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0025 13 7 6.0456 -4.4948 0.0016 14 6 7.4906 -4.7359 0.0021 15 6 7.7563 -6.2426 0.0007 16 6 9.2427 -6.4906 0.0020 17 6 9.9252 -6.5981 -1.1958 18 6 11.2866 -6.8311 -1.1982 19 6 11.9717 -6.9469 0.0041 20 7 13.3522 -7.1772 0.0053 21 6 14.1263 -6.6273 0.9617 22 8 13.6171 -6.0015 1.8702 23 8 15.4642 -6.7714 0.9104 24 6 11.2843 -6.8331 1.2054 25 6 9.9220 -6.6058 1.2009 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4315 -0.8894 28 1 3.6433 -3.4318 0.8906 29 1 5.4290 -5.2435 0.0001 30 1 7.9331 -4.2894 0.8927 31 1 7.9340 -4.2883 -0.8873 32 1 7.3139 -6.6888 -0.8899 33 1 7.3128 -6.6906 0.8901 34 1 9.3926 -6.5038 -2.1306 35 1 11.8185 -6.9186 -2.1340 36 1 13.7517 -7.7326 -0.6824 37 1 15.9776 -6.3595 1.6188 38 1 11.8145 -6.9224 2.1420 39 1 9.3868 -6.5177 2.1349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739091836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:19 Heat of formation + Delta-G solvation = -131.040774 kcal Electronic energy + Delta-G solvation = -22878.446958 eV Core-core repulsion = 19103.738124 eV Total energy + Delta-G solvation = -3774.708834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88191 -40.69848 -40.06778 -37.50479 -36.68476 -35.74365 -34.66272 -33.05988 -31.90519 -30.97873 -28.53435 -27.81687 -25.01800 -23.97479 -23.18730 -21.96448 -21.59761 -20.18274 -19.87482 -18.64196 -18.00510 -17.77187 -17.31787 -17.24146 -17.01948 -16.80842 -16.30248 -15.97376 -15.59850 -14.98093 -14.95666 -14.77096 -14.73106 -14.66198 -14.32400 -13.96387 -13.59383 -13.34190 -13.06948 -13.00578 -12.80069 -12.67135 -12.53468 -12.43162 -12.01415 -11.86581 -11.72251 -11.25873 -11.16332 -11.00302 -10.51870 -10.12816 -9.87376 -9.13035 -8.98623 -8.50796 -6.21361 0.19228 0.46043 1.00581 1.26341 1.31741 1.47871 1.56758 1.58735 1.64224 2.24056 2.28475 2.72835 2.81023 2.87501 3.54023 3.82255 3.90787 4.01910 4.08495 4.16010 4.18517 4.27339 4.47320 4.49651 4.54121 4.56128 4.66934 4.96988 5.07942 5.13481 5.26371 5.32065 5.39632 5.45387 5.67923 5.71681 5.73473 6.04423 6.12372 6.24906 6.50986 6.94685 7.23022 7.27130 8.61440 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.001782 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.660842 B =15711.405467 C =16235.589591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.110 4.110 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.127 3.873 15 C -0.077 4.077 16 C -0.096 4.096 17 C -0.096 4.096 18 C -0.134 4.134 19 C 0.138 3.862 20 N -0.638 5.638 21 C 0.663 3.337 22 O -0.599 6.599 23 O -0.512 6.512 24 C -0.137 4.137 25 C -0.104 4.104 26 H 0.277 0.723 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.420 0.580 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.432 0.568 37 H 0.450 0.550 38 H 0.124 0.876 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.527 -22.665 -2.201 36.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.003 3.997 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.045 3.955 20 N -0.292 5.292 21 C 0.416 3.584 22 O -0.490 6.490 23 O -0.324 6.324 24 C -0.157 4.157 25 C -0.122 4.122 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.257 0.743 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.272 0.728 37 H 0.314 0.686 38 H 0.142 0.858 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 29.346 -20.928 -2.056 36.102 hybrid contribution -0.752 -0.459 0.394 0.965 sum 28.594 -21.387 -1.662 35.746 Atomic orbital electron populations 1.70016 1.07240 1.28975 1.49187 1.25546 0.95265 1.02188 0.92937 0.85880 0.80650 0.79715 0.80208 1.18674 1.18366 1.16228 1.22463 0.90195 0.96731 1.58167 0.91796 1.84767 1.06498 1.06557 1.97596 1.23276 0.95811 0.99388 1.07654 1.20000 0.89422 0.83471 0.75285 1.90699 1.59446 1.44044 1.50355 1.45715 1.08710 1.06797 1.75203 1.21352 0.79750 0.96956 1.01639 1.20704 0.91947 0.93093 1.05724 1.19828 0.95755 1.00922 0.93258 1.21201 0.93619 0.98063 0.98533 1.21132 0.95078 1.02457 0.96692 1.17641 0.80974 1.02225 0.94687 1.41760 1.04808 1.52003 1.30631 1.17886 0.81447 0.77529 0.81489 1.91079 1.74837 1.46334 1.36797 1.84152 1.16155 1.75338 1.56789 1.21292 0.94616 1.01987 0.97823 1.21142 0.93487 0.98906 0.98713 0.91391 0.86543 0.86683 0.74286 0.93049 0.92290 0.87816 0.88670 0.83125 0.82723 0.72804 0.68561 0.85832 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.97 21.65 0.30 -55.50 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.30 27.74 68.60 1.90 47.20 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 7 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -9.17 18.55 -56.49 -1.05 -10.22 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.53 18.12 7.85 87.66 0.69 18.80 16 12 O -0.57 -24.65 15.86 -3.04 -0.05 -24.70 16 13 N -0.71 -15.72 5.56 -463.07 -2.57 -18.29 16 14 C 0.13 2.53 5.66 86.38 0.49 3.02 16 15 C -0.08 -0.91 5.45 29.85 0.16 -0.75 16 16 C -0.10 -1.38 5.14 -19.85 -0.10 -1.48 16 17 C -0.10 -1.17 9.69 22.25 0.22 -0.95 16 18 C -0.13 -1.55 9.97 22.39 0.22 -1.33 16 19 C 0.14 2.12 6.30 38.14 0.24 2.36 16 20 N -0.64 -7.49 5.34 -429.45 -2.29 -9.79 16 21 C 0.66 10.18 8.97 129.79 1.16 11.34 16 22 O -0.60 -14.19 14.56 19.82 0.29 -13.90 16 23 O -0.51 -4.11 13.48 -55.67 -0.75 -4.86 16 24 C -0.14 -2.60 8.70 22.39 0.19 -2.41 16 25 C -0.10 -1.75 9.69 22.25 0.22 -1.54 16 26 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 28 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 29 H 0.42 6.09 8.47 -92.71 -0.79 5.30 16 30 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 0.82 8.09 -2.39 -0.02 0.80 16 33 H 0.09 0.90 8.08 -2.38 -0.02 0.88 16 34 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.43 2.13 8.93 -92.71 -0.83 1.30 16 37 H 0.45 -0.01 9.11 -74.06 -0.67 -0.69 16 38 H 0.12 2.72 6.22 -2.91 -0.02 2.70 16 39 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -84.45 357.10 -0.34 -84.79 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -1.20 Total: 8.73 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.08 Total: -3.46 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -4.57 Total: -83.57 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.51 Total: -43.47 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -84.45 -0.34 -84.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.250 kcal (2) G-P(sol) polarization free energy of solvation -84.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds