Wall clock time and date at job start Tue Mar 31 2020 14:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48502 * 109.47083 * 269.99615 * 3 2 1 5 5 H 1.48507 * 109.47280 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47665 * 149.99912 * 3 2 1 7 7 C 1.38657 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99544 * 0.02562 * 7 2 1 9 9 O 1.34835 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.35750 * 117.00023 * 185.31125 * 9 7 2 11 11 C 1.38948 * 120.03546 * 173.01939 * 10 9 7 12 12 C 1.38121 * 120.07128 * 180.23384 * 11 10 9 13 13 C 1.38200 * 120.13761 * 359.48630 * 12 11 10 14 14 C 1.38919 * 120.06569 * 0.28073 * 13 12 11 15 15 N 1.39943 * 120.03335 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00378 * 335.60855 * 15 14 13 17 17 O 1.21593 * 120.00016 * 8.97371 * 16 15 14 18 18 N 1.34778 * 120.00391 * 188.97731 * 16 15 14 19 19 C 1.46381 * 119.64354 * 7.47233 * 18 16 15 20 20 C 1.53761 * 109.20287 * 114.91474 * 19 18 16 21 21 S 1.81737 * 108.75519 * 57.82856 * 20 19 18 22 22 O 1.42094 * 109.46922 * 189.30658 * 21 20 19 23 23 C 1.81745 * 102.30890 * 305.34648 * 21 20 19 24 24 C 1.46377 * 119.64816 * 187.74431 * 18 16 15 25 25 C 1.38735 * 120.03044 * 352.75898 * 10 9 7 26 26 H 0.97001 * 119.99767 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.96553 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.92957 * 179.76385 * 12 11 10 29 29 H 1.08002 * 119.96777 * 180.25568 * 13 12 11 30 30 H 0.97008 * 120.00030 * 155.60291 * 15 14 13 31 31 H 1.08993 * 109.46482 * 234.91535 * 19 18 16 32 32 H 1.08994 * 109.46760 * 354.90830 * 19 18 16 33 33 H 1.08999 * 109.69496 * 297.99045 * 20 19 18 34 34 H 1.08998 * 109.50887 * 177.55420 * 20 19 18 35 35 H 1.08999 * 109.57750 * 294.74637 * 23 21 20 36 36 H 1.08993 * 109.58176 * 174.33387 * 23 21 20 37 37 H 1.09007 * 109.46731 * 5.09530 * 24 18 16 38 38 H 1.09003 * 109.46623 * 125.07697 * 24 18 16 39 39 H 1.07995 * 120.07249 * 0.04979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4469 2.6528 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4052 -0.1114 11 6 5.3529 -2.4691 -0.2646 12 6 5.9802 -3.6939 -0.3829 13 6 5.2396 -4.8599 -0.3386 14 6 3.8606 -4.8029 -0.1807 15 7 3.1113 -5.9840 -0.1365 16 6 3.5860 -7.1054 -0.7139 17 8 4.7285 -7.1387 -1.1288 18 7 2.7945 -8.1899 -0.8316 19 6 1.3765 -8.0927 -0.4819 20 6 0.5279 -8.3077 -1.7460 21 16 0.9365 -9.9304 -2.4550 22 8 0.3270 -10.0562 -3.7324 23 6 2.7401 -9.8240 -2.6522 24 6 3.3634 -9.4539 -1.3021 25 6 3.2270 -3.5738 -0.0669 26 1 -0.4850 0.8401 0.0004 27 1 5.9350 -1.5598 -0.2955 28 1 7.0522 -3.7408 -0.5057 29 1 5.7334 -5.8163 -0.4272 30 1 2.2501 -5.9956 0.3099 31 1 1.1315 -8.8554 0.2572 32 1 1.1715 -7.1058 -0.0672 33 1 0.7470 -7.5257 -2.4729 34 1 -0.5297 -8.2795 -1.4836 35 1 2.9824 -9.0579 -3.3887 36 1 3.1290 -10.7871 -2.9824 37 1 4.4420 -9.3463 -1.4172 38 1 3.1522 -10.2396 -0.5768 39 1 2.1550 -3.5269 0.0555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740437820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:06 Heat of formation + Delta-G solvation = -33.779433 kcal Electronic energy + Delta-G solvation = -24834.730717 eV Core-core repulsion = 21064.239451 eV Total energy + Delta-G solvation = -3770.491265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88536 -39.07372 -37.33216 -36.28535 -35.89190 -34.55729 -32.39435 -32.06018 -30.54530 -29.33647 -28.45295 -25.25173 -24.32336 -23.91199 -21.88535 -21.73130 -19.89538 -19.02193 -17.82936 -17.72206 -17.40756 -16.41138 -15.85046 -15.53563 -15.45534 -15.27302 -15.01098 -14.81066 -14.53090 -14.31781 -14.00465 -13.71952 -13.59439 -13.28880 -13.03162 -12.53384 -12.38581 -12.32556 -12.14470 -12.10719 -11.87715 -11.66085 -11.43843 -10.98035 -10.78957 -10.31550 -10.24399 -10.04798 -9.53874 -9.49664 -9.15095 -8.86646 -8.65808 -7.78369 -7.27875 -6.44673 -4.11987 1.18452 1.94643 2.13139 2.28657 2.36442 3.05956 3.20671 3.24883 3.39245 3.41602 3.60851 4.21942 4.28933 4.48651 4.52610 4.63547 4.72157 4.79076 4.84938 5.00725 5.08742 5.17802 5.40786 5.50585 5.58008 5.61338 5.91675 5.99901 6.00851 6.12411 6.28555 6.36627 6.62015 6.88668 7.02869 7.19498 7.26929 7.61248 7.74183 7.83978 8.01359 8.41572 8.91189 9.53957 10.63115 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003097 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.491533 B = 9037.610733 C =10360.621454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.104 0.896 9 O -0.217 6.217 10 C 0.176 3.824 11 C -0.204 4.204 12 C -0.064 4.064 13 C -0.216 4.216 14 C 0.193 3.807 15 N -0.676 5.676 16 C 0.707 3.293 17 O -0.563 6.563 18 N -0.639 5.639 19 C 0.132 3.868 20 C -0.463 4.463 21 S 1.245 4.755 22 O -0.853 6.853 23 C -0.460 4.460 24 C 0.152 3.848 25 C -0.252 4.252 26 H 0.279 0.721 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.149 0.851 30 H 0.405 0.595 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -21.763 2.840 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.121 0.879 9 O -0.122 6.122 10 C 0.124 3.876 11 C -0.224 4.224 12 C -0.083 4.083 13 C -0.237 4.237 14 C 0.099 3.901 15 N -0.324 5.324 16 C 0.410 3.590 17 O -0.439 6.439 18 N -0.378 5.378 19 C 0.007 3.993 20 C -0.601 4.601 21 S 1.442 4.558 22 O -0.848 6.848 23 C -0.599 4.599 24 C 0.028 3.972 25 C -0.274 4.274 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.167 0.833 30 H 0.242 0.758 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.822 -22.219 2.281 22.513 hybrid contribution -0.003 2.530 -1.342 2.864 sum 2.818 -19.689 0.939 19.912 Atomic orbital electron populations 1.69638 1.05567 1.28491 1.48265 1.24452 0.95021 0.98840 0.95626 0.86182 0.80362 0.81388 0.78990 1.19910 1.20804 1.18276 1.20710 0.76943 0.96467 1.52439 0.87883 1.83603 1.22514 1.25396 1.80688 1.18745 0.91449 0.84879 0.92540 1.20277 0.92029 0.98153 1.11957 1.20619 0.98724 0.91382 0.97608 1.21374 0.91918 1.00076 1.10309 1.17330 0.90518 0.83330 0.98964 1.42777 1.23601 1.08584 1.57405 1.15877 0.84564 0.79987 0.78616 1.90813 1.17040 1.81747 1.54324 1.47358 1.08956 1.10630 1.70847 1.21298 0.78967 1.04295 0.94737 1.28111 1.07000 1.19219 1.05790 1.70334 0.85307 0.97423 1.02696 1.93138 1.69002 1.79666 1.43041 1.28011 1.20103 1.07899 1.03847 1.20966 1.00617 0.83695 0.91933 1.20799 1.00937 0.90317 1.15341 0.91077 0.86500 0.86492 0.83336 0.75751 0.88636 0.89216 0.88787 0.85457 0.88940 0.85733 0.87627 0.89366 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.96 55.48 0.77 -24.35 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.57 28.62 -169.99 -4.86 16.70 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.39 -10.83 9.95 30.89 0.31 -10.52 16 8 H 0.10 2.89 5.45 -52.49 -0.29 2.61 16 9 O -0.22 -5.68 8.58 0.04 0.00 -5.68 16 10 C 0.18 4.06 6.64 -39.13 -0.26 3.80 16 11 C -0.20 -4.12 9.99 -39.36 -0.39 -4.51 16 12 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 13 C -0.22 -4.03 8.87 -39.34 -0.35 -4.38 16 14 C 0.19 3.59 6.48 -83.71 -0.54 3.05 16 15 N -0.68 -9.88 5.20 -14.24 -0.07 -9.96 16 16 C 0.71 9.93 8.15 -86.92 -0.71 9.22 16 17 O -0.56 -9.70 12.47 5.28 0.07 -9.64 16 18 N -0.64 -5.89 2.78 -179.00 -0.50 -6.39 16 19 C 0.13 0.81 6.24 -3.71 -0.02 0.79 16 20 C -0.46 -3.35 6.67 37.55 0.25 -3.10 16 21 S 1.24 8.32 13.71 -107.50 -1.47 6.84 16 22 O -0.85 -12.10 18.14 -35.23 -0.64 -12.74 16 23 C -0.46 -3.32 6.65 37.28 0.25 -3.07 16 24 C 0.15 1.04 6.20 -3.99 -0.02 1.02 16 25 C -0.25 -5.33 9.05 -39.21 -0.35 -5.69 16 26 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 28 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.15 2.77 5.28 -52.51 -0.28 2.49 16 30 H 0.40 4.71 6.30 -40.82 -0.26 4.46 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.59 5.51 -51.93 -0.29 0.30 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.94 6.93 -51.93 -0.36 0.58 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.13 2.88 5.66 -52.49 -0.30 2.58 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -38.72 333.58 -8.30 -47.03 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.28 Total: 6.43 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.34 Total: -13.28 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.20 Total: -40.70 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.57 Total: -28.05 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.70 kcal Atomic # 16 Polarization: 8.32 SS G_CDS: -1.47 Total: 6.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.72 -8.30 -47.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740437820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.248 kcal (2) G-P(sol) polarization free energy of solvation -38.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds