Wall clock time and date at job start Tue Mar 31 2020 14:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48502 * 109.47083 * 269.99615 * 3 2 1 5 5 H 1.48507 * 109.47280 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47665 * 149.99912 * 3 2 1 7 7 C 1.38657 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99544 * 0.02562 * 7 2 1 9 9 O 1.34835 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.35750 * 117.00023 * 185.31125 * 9 7 2 11 11 C 1.38948 * 120.03546 * 173.01939 * 10 9 7 12 12 C 1.38121 * 120.07128 * 180.23384 * 11 10 9 13 13 C 1.38200 * 120.13761 * 359.48630 * 12 11 10 14 14 C 1.38919 * 120.06569 * 0.28073 * 13 12 11 15 15 N 1.39943 * 120.03335 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00378 * 335.60855 * 15 14 13 17 17 O 1.21593 * 120.00016 * 8.97371 * 16 15 14 18 18 N 1.34778 * 120.00391 * 188.97731 * 16 15 14 19 19 C 1.46381 * 119.64354 * 7.47233 * 18 16 15 20 20 C 1.53761 * 109.20287 * 114.91474 * 19 18 16 21 21 S 1.81737 * 108.75519 * 57.82856 * 20 19 18 22 22 O 1.42094 * 109.46922 * 189.30658 * 21 20 19 23 23 C 1.81745 * 102.30890 * 305.34648 * 21 20 19 24 24 C 1.46377 * 119.64816 * 187.74431 * 18 16 15 25 25 C 1.38735 * 120.03044 * 352.75898 * 10 9 7 26 26 H 0.97001 * 119.99767 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.96553 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.92957 * 179.76385 * 12 11 10 29 29 H 1.08002 * 119.96777 * 180.25568 * 13 12 11 30 30 H 0.97008 * 120.00030 * 155.60291 * 15 14 13 31 31 H 1.08993 * 109.46482 * 234.91535 * 19 18 16 32 32 H 1.08994 * 109.46760 * 354.90830 * 19 18 16 33 33 H 1.08999 * 109.69496 * 297.99045 * 20 19 18 34 34 H 1.08998 * 109.50887 * 177.55420 * 20 19 18 35 35 H 1.08999 * 109.57750 * 294.74637 * 23 21 20 36 36 H 1.08993 * 109.58176 * 174.33387 * 23 21 20 37 37 H 1.09007 * 109.46731 * 5.09530 * 24 18 16 38 38 H 1.09003 * 109.46623 * 125.07697 * 24 18 16 39 39 H 1.07995 * 120.07249 * 0.04979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4469 2.6528 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4052 -0.1114 11 6 5.3529 -2.4691 -0.2646 12 6 5.9802 -3.6939 -0.3829 13 6 5.2396 -4.8599 -0.3386 14 6 3.8606 -4.8029 -0.1807 15 7 3.1113 -5.9840 -0.1365 16 6 3.5860 -7.1054 -0.7139 17 8 4.7285 -7.1387 -1.1288 18 7 2.7945 -8.1899 -0.8316 19 6 1.3765 -8.0927 -0.4819 20 6 0.5279 -8.3077 -1.7460 21 16 0.9365 -9.9304 -2.4550 22 8 0.3270 -10.0562 -3.7324 23 6 2.7401 -9.8240 -2.6522 24 6 3.3634 -9.4539 -1.3021 25 6 3.2270 -3.5738 -0.0669 26 1 -0.4850 0.8401 0.0004 27 1 5.9350 -1.5598 -0.2955 28 1 7.0522 -3.7408 -0.5057 29 1 5.7334 -5.8163 -0.4272 30 1 2.2501 -5.9956 0.3099 31 1 1.1315 -8.8554 0.2572 32 1 1.1715 -7.1058 -0.0672 33 1 0.7470 -7.5257 -2.4729 34 1 -0.5297 -8.2795 -1.4836 35 1 2.9824 -9.0579 -3.3887 36 1 3.1290 -10.7871 -2.9824 37 1 4.4420 -9.3463 -1.4172 38 1 3.1522 -10.2396 -0.5768 39 1 2.1550 -3.5269 0.0555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740437820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:06 Heat of formation + Delta-G solvation = -63.394509 kcal Electronic energy + Delta-G solvation = -24836.014923 eV Core-core repulsion = 21064.239451 eV Total energy + Delta-G solvation = -3771.775471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02773 -40.68950 -38.66354 -37.47896 -36.84606 -35.87012 -34.41719 -32.76203 -31.51599 -30.89354 -29.83904 -27.20428 -25.03838 -24.79227 -23.45724 -23.03440 -21.04221 -20.28408 -19.49058 -19.14456 -18.26318 -17.60515 -16.98971 -16.77941 -16.60373 -16.20655 -16.04486 -15.89417 -15.71927 -15.67917 -15.44987 -15.29590 -14.77177 -14.62696 -14.21700 -14.03604 -13.82672 -13.40203 -13.20408 -13.13631 -12.96166 -12.74397 -12.62020 -12.49968 -12.42857 -12.08286 -11.51960 -11.43151 -11.07744 -10.89744 -10.74408 -9.97054 -9.38424 -9.36694 -8.86921 -8.50994 -6.23493 0.42248 0.57843 0.67089 1.31480 1.35385 1.39833 1.52158 1.52682 1.92876 2.27745 2.65082 2.72912 2.78966 3.02185 3.18551 3.66458 3.88878 4.05392 4.06883 4.09051 4.23157 4.33863 4.41731 4.48806 4.63240 4.65209 4.73911 4.85268 4.90811 4.95396 5.02075 5.23474 5.34052 5.48069 5.50393 5.67781 5.74513 5.77485 5.91962 6.25003 6.70863 6.83880 7.30162 7.57763 8.60215 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003097 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.491533 B = 9037.610733 C =10360.621454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.399 4.399 8 H 0.084 0.916 9 O -0.241 6.241 10 C 0.142 3.858 11 C -0.209 4.209 12 C -0.053 4.053 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.673 5.673 16 C 0.700 3.300 17 O -0.598 6.598 18 N -0.629 5.629 19 C 0.124 3.876 20 C -0.466 4.466 21 S 1.325 4.675 22 O -0.929 6.929 23 C -0.460 4.460 24 C 0.146 3.854 25 C -0.262 4.262 26 H 0.284 0.716 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.418 0.582 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.150 0.850 35 H 0.051 0.949 36 H 0.151 0.849 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -23.859 4.015 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.101 0.899 9 O -0.148 6.148 10 C 0.093 3.907 11 C -0.228 4.228 12 C -0.071 4.071 13 C -0.234 4.234 14 C 0.102 3.898 15 N -0.322 5.322 16 C 0.403 3.597 17 O -0.477 6.477 18 N -0.366 5.366 19 C 0.001 3.999 20 C -0.605 4.605 21 S 1.524 4.476 22 O -0.925 6.925 23 C -0.599 4.599 24 C 0.023 3.977 25 C -0.284 4.284 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.258 0.742 31 H 0.175 0.825 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.105 0.895 38 H 0.167 0.833 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.004 -24.396 3.456 24.963 hybrid contribution -0.255 2.879 -1.726 3.366 sum 3.750 -21.517 1.730 21.910 Atomic orbital electron populations 1.69712 1.06792 1.29549 1.50139 1.25222 0.95844 1.01994 0.95513 0.85270 0.79001 0.77673 0.79133 1.19472 1.19173 1.18521 1.20699 0.78038 0.96123 1.52668 0.89888 1.83551 1.21309 1.27008 1.82967 1.19289 0.92836 0.84590 0.94022 1.20553 0.90870 0.99779 1.11634 1.21057 1.00649 0.90079 0.95352 1.21698 0.91911 1.00792 1.08950 1.17363 0.91026 0.83887 0.97512 1.42711 1.23929 1.07796 1.57738 1.16098 0.84686 0.80572 0.78354 1.90769 1.18834 1.82471 1.55664 1.47497 1.09777 1.09864 1.69493 1.21736 0.76652 1.06370 0.95183 1.28187 1.08927 1.17833 1.05535 1.69369 0.83380 0.95562 0.99273 1.92999 1.71406 1.81512 1.46548 1.28064 1.20398 1.08043 1.03347 1.21347 0.99459 0.83858 0.92991 1.20771 1.00326 0.91182 1.16163 0.90611 0.85056 0.82536 0.82557 0.74203 0.82528 0.89707 0.92779 0.83183 0.92942 0.83082 0.89496 0.83290 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.08 13.96 21.61 0.30 -53.78 16 2 C 0.01 0.74 5.49 84.83 0.47 1.20 16 3 Si 0.97 45.09 28.62 68.60 1.96 47.05 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.40 -23.10 9.95 67.92 0.68 -22.42 16 8 H 0.08 4.96 5.45 -2.91 -0.02 4.95 16 9 O -0.24 -12.99 8.58 -22.78 -0.20 -13.18 16 10 C 0.14 6.69 6.64 22.56 0.15 6.84 16 11 C -0.21 -8.22 9.99 22.41 0.22 -8.00 16 12 C -0.05 -1.79 10.03 22.23 0.22 -1.57 16 13 C -0.21 -7.62 8.87 22.42 0.20 -7.42 16 14 C 0.20 7.33 6.48 38.13 0.25 7.58 16 15 N -0.67 -19.17 5.20 -317.22 -1.65 -20.82 16 16 C 0.70 18.73 8.15 179.05 1.46 20.19 16 17 O -0.60 -19.99 12.47 -4.01 -0.05 -20.04 16 18 N -0.63 -10.02 2.78 -838.49 -2.33 -12.35 16 19 C 0.12 1.12 6.24 86.66 0.54 1.66 16 20 C -0.47 -5.96 6.67 72.24 0.48 -5.47 16 21 S 1.32 15.04 13.71 -56.49 -0.77 14.26 16 22 O -0.93 -26.12 18.14 -148.98 -2.70 -28.83 16 23 C -0.46 -5.75 6.65 72.06 0.48 -5.27 16 24 C 0.15 1.53 6.20 86.48 0.54 2.07 16 25 C -0.26 -11.41 9.05 22.51 0.20 -11.21 16 26 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.16 5.52 5.28 -3.32 -0.02 5.50 16 30 H 0.42 9.41 6.30 -92.70 -0.58 8.82 16 31 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.08 0.92 5.51 -2.39 -0.01 0.91 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.35 6.93 -2.38 -0.02 1.34 16 38 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.12 5.47 5.66 -2.91 -0.02 5.46 16 Total: -1.00 -89.98 333.58 0.97 -89.01 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.52 Total: 20.49 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 5.88 Total: -21.82 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.68 Total: -86.95 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -2.95 Total: -62.05 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.96 Total: 47.05 kcal Atomic # 16 Polarization: 15.04 SS G_CDS: -0.77 Total: 14.26 kcal Total: -89.98 0.97 -89.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740437820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.618 kcal (2) G-P(sol) polarization free energy of solvation -89.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds