Wall clock time and date at job start Tue Mar 31 2020 14:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86802 * 120.00220 * 2 1 4 4 H 1.48492 * 109.47278 * 240.00067 * 3 2 1 5 5 H 1.48494 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46965 * 119.99899 * 3 2 1 7 7 C 1.38815 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00440 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.76208 * 99.99858 * 185.65579 * 9 7 2 11 11 C 1.39109 * 120.19148 * 6.85217 * 10 9 7 12 12 C 1.37911 * 120.05100 * 180.02562 * 11 10 9 13 13 C 1.38674 * 120.45198 * 359.97438 * 12 11 10 14 14 C 1.37777 * 120.39353 * 0.02562 * 13 12 11 15 15 C 1.39740 * 119.92878 * 0.02562 * 14 13 12 16 16 C 1.47280 * 120.22116 * 179.97438 * 15 14 13 17 17 O 1.21532 * 120.00353 * 180.02562 * 16 15 14 18 18 O 1.34796 * 119.99902 * 0.02562 * 16 15 14 19 19 C 1.45201 * 117.00093 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.46856 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47037 * 180.02562 * 20 19 18 22 22 N 1.46496 * 109.47463 * 180.02562 * 21 20 19 23 23 C 1.34776 * 120.00245 * 180.02562 * 22 21 20 24 24 N 1.34781 * 119.99843 * 179.97438 * 23 22 21 25 25 O 1.21583 * 120.00176 * 359.97438 * 23 22 21 26 26 H 0.97000 * 119.99823 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.97527 * 359.97438 * 11 10 9 28 28 H 1.08007 * 119.77255 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.80180 * 180.02562 * 13 12 11 30 30 H 1.07997 * 120.03245 * 179.72828 * 14 13 12 31 31 H 1.08993 * 109.46930 * 300.00261 * 19 18 16 32 32 H 1.09004 * 109.46701 * 60.00027 * 19 18 16 33 33 H 1.09005 * 109.47235 * 299.99938 * 20 19 18 34 34 H 1.08996 * 109.47656 * 60.00287 * 20 19 18 35 35 H 1.08997 * 109.47157 * 300.00187 * 21 20 19 36 36 H 1.09006 * 109.47272 * 59.99875 * 21 20 19 37 37 H 0.96999 * 119.99696 * 359.97438 * 22 21 20 38 38 H 0.97000 * 119.99984 * 0.02562 * 24 23 22 39 39 H 0.96996 * 119.99373 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0095 -1.2022 -0.0005 8 1 3.0896 -1.2023 -0.0001 9 16 1.1285 -2.7281 -0.0005 10 6 2.4710 -3.8566 0.1697 11 6 3.7584 -3.3826 0.4004 12 6 4.8071 -4.2684 0.5327 13 6 4.5893 -5.6346 0.4379 14 6 3.3219 -6.1243 0.2098 15 6 2.2476 -5.2412 0.0721 16 6 0.8902 -5.7576 -0.1724 17 8 -0.0412 -4.9861 -0.2920 18 8 0.6807 -7.0861 -0.2637 19 6 -0.6826 -7.5235 -0.5052 20 6 -0.7227 -9.0511 -0.5780 21 6 -2.1592 -9.5120 -0.8332 22 7 -2.1978 -10.9749 -0.9023 23 6 -3.3668 -11.6086 -1.1215 24 7 -3.4022 -12.9544 -1.1856 25 8 -4.3896 -10.9663 -1.2616 26 1 -0.4850 0.8401 0.0004 27 1 3.9368 -2.3201 0.4752 28 1 5.8047 -3.8954 0.7121 29 1 5.4182 -6.3189 0.5435 30 1 3.1596 -7.1892 0.1326 31 1 -1.3233 -7.1811 0.3073 32 1 -1.0365 -7.1057 -1.4478 33 1 -0.0820 -9.3931 -1.3908 34 1 -0.3686 -9.4693 0.3642 35 1 -2.8002 -9.1700 -0.0207 36 1 -2.5129 -9.0940 -1.7756 37 1 -1.3817 -11.4873 -0.7909 38 1 -2.5862 -13.4669 -1.0735 39 1 -4.2436 -13.4104 -1.3431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744147975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:56 Heat of formation + Delta-G solvation = -97.801252 kcal Electronic energy + Delta-G solvation = -23424.408058 eV Core-core repulsion = 19651.140598 eV Total energy + Delta-G solvation = -3773.267460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13285 -39.89040 -37.93706 -36.39691 -35.39673 -34.02013 -32.83624 -31.90405 -30.65391 -30.36408 -26.16450 -25.90371 -23.60147 -22.05838 -21.87587 -21.45116 -20.51773 -18.55825 -18.14615 -17.63946 -17.17904 -16.56695 -16.55604 -15.77234 -15.66363 -15.20601 -14.99144 -14.50258 -14.49649 -14.20136 -14.10962 -13.47824 -13.03678 -13.01632 -12.79485 -12.36859 -12.11792 -11.71954 -11.46084 -11.45697 -11.27257 -11.22956 -11.00180 -10.62679 -10.39743 -10.28174 -10.15966 -10.05388 -9.82549 -9.57345 -9.34818 -8.80931 -8.43545 -8.28006 -6.65978 -6.54146 -4.26240 1.34905 1.98106 2.46168 2.91408 3.03818 3.09411 3.10266 3.14702 3.19974 3.33140 3.98839 4.14077 4.37423 4.66098 4.69334 4.83752 4.87680 5.05165 5.26077 5.31762 5.40610 5.43197 5.52604 5.58992 5.77883 5.81775 5.96415 6.10342 6.10737 6.29281 6.34852 6.55345 6.55755 6.79060 6.82293 7.02834 7.06959 7.38024 7.52660 7.60380 8.08275 8.30035 8.38808 8.91981 10.49339 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002406 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.772442 B =11633.440461 C =13145.258575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.084 3.916 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.596 4.596 8 H 0.093 0.907 9 S 0.186 5.814 10 C -0.056 4.056 11 C -0.155 4.155 12 C -0.069 4.069 13 C -0.192 4.192 14 C -0.038 4.038 15 C -0.166 4.166 16 C 0.497 3.503 17 O -0.483 6.483 18 O -0.362 6.362 19 C 0.071 3.929 20 C -0.129 4.129 21 C 0.139 3.861 22 N -0.743 5.743 23 C 0.704 3.296 24 N -0.869 5.869 25 O -0.593 6.593 26 H 0.277 0.723 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.396 0.604 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -21.755 -0.450 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.128 4.128 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.742 4.742 8 H 0.111 0.889 9 S 0.452 5.548 10 C -0.175 4.175 11 C -0.180 4.180 12 C -0.091 4.091 13 C -0.216 4.216 14 C -0.058 4.058 15 C -0.180 4.180 16 C 0.342 3.658 17 O -0.372 6.372 18 O -0.280 6.280 19 C -0.004 4.004 20 C -0.167 4.167 21 C 0.014 3.986 22 N -0.400 5.400 23 C 0.402 3.598 24 N -0.437 5.437 25 O -0.470 6.470 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.224 0.776 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.059 -20.536 -0.721 20.548 hybrid contribution 2.298 0.486 0.173 2.355 sum 2.239 -20.050 -0.548 20.182 Atomic orbital electron populations 1.69955 1.06280 1.28763 1.43811 1.25129 0.95016 0.99764 0.92880 0.86158 0.79463 0.80378 0.79354 1.19385 1.20490 1.19401 1.23992 0.97003 0.93713 1.59477 0.88949 1.84690 1.02419 0.93377 1.74327 1.23080 1.01067 0.96548 0.96840 1.21395 0.91452 1.00953 1.04225 1.21155 0.98184 0.93420 0.96365 1.20710 0.96502 0.95253 1.09160 1.21076 0.91900 0.98481 0.94353 1.18279 0.90084 0.92182 1.17424 1.21164 0.89919 0.79777 0.74951 1.90856 1.43875 1.56440 1.46002 1.86481 1.31452 1.26080 1.84004 1.22681 0.81703 0.93374 1.02604 1.21678 0.96300 0.94726 1.04022 1.21061 0.96215 0.78276 1.03028 1.45023 1.08949 1.07759 1.78289 1.15960 0.83948 0.82194 0.77711 1.42986 1.14378 1.05539 1.80804 1.91000 1.32876 1.65579 1.57575 0.91299 0.84138 0.86791 0.86797 0.85890 0.90899 0.90899 0.90098 0.90094 0.90902 0.90894 0.76853 0.77592 0.75352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.22 13.22 55.49 0.73 -23.49 16 2 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 3 Si 0.92 20.25 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.60 -16.03 9.00 30.95 0.28 -15.75 16 8 H 0.09 2.34 4.98 -52.48 -0.26 2.08 16 9 S 0.19 4.89 18.56 -107.50 -2.00 2.89 16 10 C -0.06 -1.25 6.15 -38.37 -0.24 -1.48 16 11 C -0.16 -3.15 9.22 -39.38 -0.36 -3.52 16 12 C -0.07 -1.14 10.03 -39.54 -0.40 -1.53 16 13 C -0.19 -2.91 10.02 -39.59 -0.40 -3.31 16 14 C -0.04 -0.63 9.61 -39.19 -0.38 -1.00 16 15 C -0.17 -3.31 5.89 -104.77 -0.62 -3.92 16 16 C 0.50 9.74 7.87 34.41 0.27 10.01 16 17 O -0.48 -10.94 13.57 -19.29 -0.26 -11.20 16 18 O -0.36 -5.61 9.47 -40.75 -0.39 -6.00 16 19 C 0.07 0.88 5.48 37.15 0.20 1.09 16 20 C -0.13 -1.07 5.71 -26.73 -0.15 -1.22 16 21 C 0.14 1.22 5.67 -4.04 -0.02 1.20 16 22 N -0.74 -5.43 5.56 -65.22 -0.36 -5.79 16 23 C 0.70 6.79 8.84 -86.92 -0.77 6.02 16 24 N -0.87 -4.33 8.88 27.63 0.25 -4.08 16 25 O -0.59 -8.82 17.18 5.29 0.09 -8.73 16 26 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.14 2.94 5.03 -52.49 -0.26 2.68 16 28 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.66 7.61 -52.49 -0.40 1.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 1.62 8.49 -40.82 -0.35 1.27 16 38 H 0.40 0.66 8.84 -40.82 -0.36 0.30 16 39 H 0.41 1.77 8.93 -40.82 -0.36 1.41 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -34.79 353.44 -8.82 -43.60 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.51 Total: 3.52 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.67 Total: -11.28 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.62 Total: -33.37 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.56 Total: -25.93 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.00 Total: 2.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.79 -8.82 -43.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744147975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.196 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds