Wall clock time and date at job start Tue Mar 31 2020 14:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86802 * 120.00220 * 2 1 4 4 H 1.48492 * 109.47278 * 240.00067 * 3 2 1 5 5 H 1.48494 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46965 * 119.99899 * 3 2 1 7 7 C 1.38815 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00440 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.76208 * 99.99858 * 185.65579 * 9 7 2 11 11 C 1.39109 * 120.19148 * 6.85217 * 10 9 7 12 12 C 1.37911 * 120.05100 * 180.02562 * 11 10 9 13 13 C 1.38674 * 120.45198 * 359.97438 * 12 11 10 14 14 C 1.37777 * 120.39353 * 0.02562 * 13 12 11 15 15 C 1.39740 * 119.92878 * 0.02562 * 14 13 12 16 16 C 1.47280 * 120.22116 * 179.97438 * 15 14 13 17 17 O 1.21532 * 120.00353 * 180.02562 * 16 15 14 18 18 O 1.34796 * 119.99902 * 0.02562 * 16 15 14 19 19 C 1.45201 * 117.00093 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.46856 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47037 * 180.02562 * 20 19 18 22 22 N 1.46496 * 109.47463 * 180.02562 * 21 20 19 23 23 C 1.34776 * 120.00245 * 180.02562 * 22 21 20 24 24 N 1.34781 * 119.99843 * 179.97438 * 23 22 21 25 25 O 1.21583 * 120.00176 * 359.97438 * 23 22 21 26 26 H 0.97000 * 119.99823 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.97527 * 359.97438 * 11 10 9 28 28 H 1.08007 * 119.77255 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.80180 * 180.02562 * 13 12 11 30 30 H 1.07997 * 120.03245 * 179.72828 * 14 13 12 31 31 H 1.08993 * 109.46930 * 300.00261 * 19 18 16 32 32 H 1.09004 * 109.46701 * 60.00027 * 19 18 16 33 33 H 1.09005 * 109.47235 * 299.99938 * 20 19 18 34 34 H 1.08996 * 109.47656 * 60.00287 * 20 19 18 35 35 H 1.08997 * 109.47157 * 300.00187 * 21 20 19 36 36 H 1.09006 * 109.47272 * 59.99875 * 21 20 19 37 37 H 0.96999 * 119.99696 * 359.97438 * 22 21 20 38 38 H 0.97000 * 119.99984 * 0.02562 * 24 23 22 39 39 H 0.96996 * 119.99373 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0095 -1.2022 -0.0005 8 1 3.0896 -1.2023 -0.0001 9 16 1.1285 -2.7281 -0.0005 10 6 2.4710 -3.8566 0.1697 11 6 3.7584 -3.3826 0.4004 12 6 4.8071 -4.2684 0.5327 13 6 4.5893 -5.6346 0.4379 14 6 3.3219 -6.1243 0.2098 15 6 2.2476 -5.2412 0.0721 16 6 0.8902 -5.7576 -0.1724 17 8 -0.0412 -4.9861 -0.2920 18 8 0.6807 -7.0861 -0.2637 19 6 -0.6826 -7.5235 -0.5052 20 6 -0.7227 -9.0511 -0.5780 21 6 -2.1592 -9.5120 -0.8332 22 7 -2.1978 -10.9749 -0.9023 23 6 -3.3668 -11.6086 -1.1215 24 7 -3.4022 -12.9544 -1.1856 25 8 -4.3896 -10.9663 -1.2616 26 1 -0.4850 0.8401 0.0004 27 1 3.9368 -2.3201 0.4752 28 1 5.8047 -3.8954 0.7121 29 1 5.4182 -6.3189 0.5435 30 1 3.1596 -7.1892 0.1326 31 1 -1.3233 -7.1811 0.3073 32 1 -1.0365 -7.1057 -1.4478 33 1 -0.0820 -9.3931 -1.3908 34 1 -0.3686 -9.4693 0.3642 35 1 -2.8002 -9.1700 -0.0207 36 1 -2.5129 -9.0940 -1.7756 37 1 -1.3817 -11.4873 -0.7909 38 1 -2.5862 -13.4669 -1.0735 39 1 -4.2436 -13.4104 -1.3431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744147975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:55 Heat of formation + Delta-G solvation = -124.182776 kcal Electronic energy + Delta-G solvation = -23425.552046 eV Core-core repulsion = 19651.140598 eV Total energy + Delta-G solvation = -3774.411448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43238 -40.82180 -39.37857 -37.68139 -36.39937 -34.79528 -34.72021 -32.86751 -31.98849 -31.84213 -27.87045 -27.17753 -24.95527 -23.47800 -22.76109 -22.27190 -21.93592 -19.93421 -19.19657 -18.82379 -18.26817 -17.90468 -17.67186 -17.27912 -16.96397 -16.61095 -15.94844 -15.70780 -15.55194 -15.50930 -15.19103 -15.00352 -14.65639 -14.21746 -14.14944 -13.53225 -13.37716 -13.20393 -12.97560 -12.93850 -12.56386 -12.44250 -12.42797 -12.07503 -11.79953 -11.53203 -11.48893 -11.45835 -11.36110 -10.73997 -10.45296 -10.12021 -10.00045 -9.88942 -8.54478 -8.48415 -6.29060 -0.13906 0.52562 1.25440 1.38617 1.43555 1.49526 1.60969 1.69099 2.07701 2.16398 2.20132 2.84253 2.97543 3.18871 3.61942 3.75362 3.88853 3.96669 4.05322 4.17330 4.26937 4.38767 4.43653 4.62086 4.64767 4.66960 4.79334 5.01696 5.04552 5.12807 5.36171 5.40532 5.42960 5.46481 5.57358 5.66028 5.90710 6.04736 6.07718 6.14282 6.88329 6.93242 7.11709 7.65885 8.57392 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002406 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.772442 B =11633.440461 C =13145.258575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.601 4.601 8 H 0.099 0.901 9 S 0.065 5.935 10 C -0.068 4.068 11 C -0.176 4.176 12 C -0.057 4.057 13 C -0.161 4.161 14 C -0.033 4.033 15 C -0.174 4.174 16 C 0.497 3.503 17 O -0.520 6.520 18 O -0.345 6.345 19 C 0.062 3.938 20 C -0.107 4.107 21 C 0.142 3.858 22 N -0.728 5.728 23 C 0.696 3.304 24 N -0.846 5.846 25 O -0.652 6.652 26 H 0.277 0.723 27 H 0.125 0.875 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.416 0.584 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -25.267 -0.068 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.747 4.747 8 H 0.117 0.883 9 S 0.325 5.675 10 C -0.186 4.186 11 C -0.201 4.201 12 C -0.078 4.078 13 C -0.184 4.184 14 C -0.052 4.052 15 C -0.186 4.186 16 C 0.343 3.657 17 O -0.412 6.412 18 O -0.262 6.262 19 C -0.012 4.012 20 C -0.145 4.145 21 C 0.017 3.983 22 N -0.386 5.386 23 C 0.394 3.606 24 N -0.415 5.415 25 O -0.534 6.534 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.173 0.827 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.247 0.753 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.240 -24.209 -0.326 24.580 hybrid contribution 1.201 1.104 0.073 1.633 sum 5.441 -23.105 -0.253 23.738 Atomic orbital electron populations 1.70114 1.08081 1.29410 1.46262 1.26185 0.95877 1.03561 0.92548 0.85053 0.78076 0.75505 0.79797 1.18512 1.20039 1.18272 1.24186 0.97158 0.93869 1.59489 0.88335 1.84868 1.06551 0.95966 1.80163 1.22989 1.00210 0.96670 0.98692 1.21448 0.91827 1.01208 1.05609 1.21645 0.98716 0.93688 0.93755 1.21392 0.97381 0.95303 1.04299 1.21566 0.91118 0.99818 0.92734 1.18659 0.91516 0.91790 1.16604 1.21362 0.89672 0.80790 0.73855 1.90867 1.45115 1.57763 1.47408 1.86445 1.33156 1.23467 1.83152 1.22989 0.79998 0.96336 1.01890 1.21513 0.96070 0.91045 1.05848 1.20884 0.96332 0.79288 1.01823 1.44760 1.09246 1.07105 1.77514 1.16242 0.83558 0.83288 0.77525 1.42762 1.15710 1.03944 1.79088 1.90966 1.35034 1.67152 1.60248 0.91407 0.85760 0.82697 0.81363 0.81992 0.91783 0.91794 0.88130 0.88117 0.92340 0.92338 0.74551 0.75289 0.74713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.71 13.22 21.65 0.29 -54.42 16 2 C 0.02 1.37 5.49 84.87 0.47 1.83 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.60 -34.29 9.00 67.96 0.61 -33.68 16 8 H 0.10 5.24 4.98 -2.91 -0.01 5.23 16 9 S 0.06 3.67 18.56 -56.49 -1.05 2.62 16 10 C -0.07 -3.11 6.15 23.05 0.14 -2.97 16 11 C -0.18 -7.02 9.22 22.40 0.21 -6.81 16 12 C -0.06 -1.62 10.03 22.30 0.22 -1.40 16 13 C -0.16 -3.83 10.02 22.26 0.22 -3.60 16 14 C -0.03 -0.92 9.61 22.52 0.22 -0.70 16 15 C -0.17 -6.75 5.89 -19.96 -0.12 -6.87 16 16 C 0.50 19.68 7.87 70.20 0.55 20.24 16 17 O -0.52 -25.11 13.57 19.73 0.27 -24.84 16 18 O -0.34 -10.16 9.47 -57.07 -0.54 -10.70 16 19 C 0.06 1.52 5.48 71.98 0.39 1.92 16 20 C -0.11 -1.51 5.71 30.59 0.17 -1.33 16 21 C 0.14 2.39 5.67 86.38 0.49 2.88 16 22 N -0.73 -9.23 5.56 -478.53 -2.66 -11.89 16 23 C 0.70 12.67 8.84 179.05 1.58 14.26 16 24 N -0.85 -6.71 8.88 -184.75 -1.64 -8.35 16 25 O -0.65 -19.72 17.18 -3.98 -0.07 -19.79 16 26 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.12 5.32 5.03 -2.91 -0.01 5.30 16 28 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.16 3.30 7.61 -2.91 -0.02 3.27 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.42 1.97 8.49 -92.71 -0.79 1.18 16 38 H 0.42 0.11 8.84 -92.71 -0.82 -0.71 16 39 H 0.42 2.89 8.93 -92.71 -0.83 2.06 16 Total: -1.00 -85.36 353.44 0.49 -84.87 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.30 Total: 13.65 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 5.17 Total: -16.24 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -4.01 Total: -74.66 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.34 Total: -55.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.05 Total: 2.62 kcal Total: -85.36 0.49 -84.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744147975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.310 kcal (2) G-P(sol) polarization free energy of solvation -85.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds