Wall clock time and date at job start Tue Mar 31 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 O 1.42898 * 109.47148 * 179.97438 * 15 14 12 17 17 C 1.35924 * 116.99981 * 179.97438 * 16 15 14 18 18 C 1.38721 * 120.04340 * 359.72926 * 17 16 15 19 19 C 1.38139 * 119.95752 * 179.79047 * 18 17 16 20 20 C 1.38373 * 120.04131 * 0.46043 * 19 18 17 21 21 Cl 1.73603 * 119.95803 * 179.76616 * 20 19 18 22 22 C 1.38368 * 120.08538 * 359.79136 * 20 19 18 23 23 C 1.38145 * 120.03916 * 359.97438 * 22 20 19 24 24 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 25 25 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 26 26 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 28 28 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 29 29 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 30 30 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 31 31 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 32 32 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 33 33 H 1.07998 * 120.01992 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.98123 * 180.22655 * 19 18 17 35 35 H 1.07997 * 119.98128 * 179.97438 * 22 20 19 36 36 H 1.08003 * 120.01575 * 179.97438 * 23 22 20 37 37 H 1.09003 * 117.50064 * 359.97438 * 24 9 7 38 38 H 1.08997 * 117.50444 * 145.01778 * 24 9 7 39 39 H 1.08997 * 117.50286 * 214.97535 * 25 9 7 40 40 H 1.09000 * 117.49777 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 8 2.9460 -5.3501 6.3646 17 6 2.5490 -5.8844 7.5497 18 6 1.1978 -6.0300 7.8280 19 6 0.7964 -6.5773 9.0311 20 6 1.7409 -6.9713 9.9624 21 17 1.2339 -7.6532 11.4762 22 6 3.0890 -6.8221 9.6888 23 6 3.4944 -6.2797 8.4847 24 6 1.7501 -3.4765 -1.2119 25 6 0.4459 -2.7041 -1.4260 26 1 -0.4850 0.8401 0.0004 27 1 0.0685 -2.3412 1.6433 28 1 0.1031 -3.9677 0.9209 29 1 3.1883 -5.1437 3.7191 30 1 3.1533 -3.5170 4.4408 31 1 1.2822 -4.2112 5.9129 32 1 1.3175 -5.8376 5.1908 33 1 0.4602 -5.7192 7.1028 34 1 -0.2554 -6.6942 9.2467 35 1 3.8248 -7.1298 10.4170 36 1 4.5468 -6.1630 8.2717 37 1 2.6136 -3.1810 -1.8078 38 1 1.6739 -4.5408 -0.9896 39 1 -0.4877 -3.2606 -1.3445 40 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:22 Heat of formation + Delta-G solvation = -100.914236 kcal Electronic energy + Delta-G solvation = -23568.916261 eV Core-core repulsion = 19761.177355 eV Total energy + Delta-G solvation = -3807.738906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59792 -41.08485 -38.90592 -38.54045 -37.20179 -36.98469 -34.03152 -33.45531 -32.14936 -30.48231 -28.80227 -27.39597 -25.87972 -23.80567 -23.08527 -22.89572 -21.50265 -21.19566 -19.60374 -18.60359 -18.23789 -17.83291 -17.46253 -17.07417 -16.93248 -16.81729 -16.50907 -15.68230 -15.46483 -14.99459 -14.76394 -14.61417 -14.55759 -14.11301 -13.83878 -13.57539 -13.48476 -13.24442 -12.97662 -12.89636 -12.79335 -12.42627 -12.40925 -12.24446 -12.09368 -11.74726 -11.71067 -11.70267 -11.58626 -11.39806 -10.78905 -10.49917 -10.16110 -10.09287 -9.19263 -8.14779 -6.25677 0.15143 0.19811 1.16359 1.17955 1.40764 1.43085 1.43642 1.52849 2.37996 2.42859 2.56827 3.14507 3.40739 3.50964 3.73273 3.79483 3.84677 3.94241 4.07795 4.13839 4.27716 4.32841 4.38794 4.46800 4.50533 4.61854 4.65065 4.68286 4.84206 4.89092 4.96383 4.97017 5.18522 5.18988 5.22794 5.45127 5.52625 5.58074 5.68625 5.74701 6.22115 6.34937 6.75820 6.80049 7.43178 8.94023 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.001971 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.175804 B =14205.360305 C =14568.982370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.129 3.871 11 O -0.344 6.344 12 C 0.459 3.541 13 O -0.550 6.550 14 C -0.103 4.103 15 C 0.076 3.924 16 O -0.314 6.314 17 C 0.122 3.878 18 C -0.205 4.205 19 C -0.075 4.075 20 C -0.084 4.084 21 Cl -0.072 7.072 22 C -0.069 4.069 23 C -0.142 4.142 24 C -0.176 4.176 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -14.586 18.025 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.000 4.000 10 C 0.055 3.945 11 O -0.260 6.260 12 C 0.304 3.696 13 O -0.442 6.442 14 C -0.140 4.140 15 C 0.001 3.999 16 O -0.227 6.227 17 C 0.077 3.923 18 C -0.224 4.224 19 C -0.093 4.093 20 C -0.111 4.111 21 Cl -0.043 7.043 22 C -0.088 4.088 23 C -0.160 4.160 24 C -0.213 4.213 25 C -0.186 4.186 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.569 -14.507 18.113 23.865 hybrid contribution -0.622 1.127 -0.122 1.293 sum 4.948 -13.380 17.991 22.960 Atomic orbital electron populations 1.70101 1.07128 1.27307 1.50207 1.25732 0.95615 1.02171 0.94356 0.85649 0.78864 0.79413 0.78322 1.19972 1.21266 1.19111 1.20638 0.92973 0.89745 1.50656 0.92524 1.18919 1.00591 0.94862 0.85634 1.22527 0.85880 0.96430 0.89663 1.86508 1.40982 1.71367 1.27113 1.23967 0.90114 0.73475 0.82084 1.90625 1.23066 1.53251 1.77218 1.21069 0.95725 1.05856 0.91370 1.22409 0.88973 1.00502 0.88019 1.85960 1.35649 1.76003 1.25110 1.19310 0.93268 0.93859 0.85890 1.21441 0.95214 1.06109 0.99629 1.21036 1.00409 0.96053 0.91817 1.20966 0.94718 1.05783 0.89603 1.98365 1.91428 1.83732 1.30810 1.21120 0.94201 0.96756 0.96699 1.20648 1.00382 1.02695 0.92302 1.23020 0.97440 0.96440 1.04403 1.22487 0.93943 1.01390 1.00759 0.93027 0.93991 0.93052 0.84183 0.85093 0.91141 0.90475 0.84057 0.83518 0.82085 0.82442 0.89588 0.88903 0.90372 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.29 12.93 21.45 0.28 -51.01 16 2 C 0.02 1.16 5.39 84.66 0.46 1.62 16 3 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.50 -26.86 8.77 25.60 0.22 -26.63 16 8 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 9 C 0.00 0.02 1.61 -52.93 -0.08 -0.07 16 10 C 0.13 5.93 5.28 71.98 0.38 6.31 16 11 O -0.34 -14.09 10.16 -51.44 -0.52 -14.61 16 12 C 0.46 15.63 7.96 71.24 0.57 16.20 16 13 O -0.55 -21.46 15.73 21.97 0.35 -21.11 16 14 C -0.10 -2.33 6.18 29.85 0.18 -2.15 16 15 C 0.08 1.62 4.03 71.98 0.29 1.91 16 16 O -0.31 -6.47 10.14 -92.70 -0.94 -7.41 16 17 C 0.12 2.37 6.69 22.50 0.15 2.53 16 18 C -0.21 -3.84 9.04 22.36 0.20 -3.64 16 19 C -0.07 -1.27 9.82 22.28 0.22 -1.05 16 20 C -0.08 -1.38 6.32 22.33 0.14 -1.24 16 21 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 22 C -0.07 -0.99 9.82 22.28 0.22 -0.77 16 23 C -0.14 -2.24 9.99 22.36 0.22 -2.01 16 24 C -0.18 -7.15 9.96 30.62 0.30 -6.84 16 25 C -0.15 -6.66 9.43 30.62 0.29 -6.38 16 26 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.04 2.20 8.13 -2.39 -0.02 2.18 16 28 H 0.05 2.19 8.09 -2.38 -0.02 2.18 16 29 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 1.58 7.60 -2.39 -0.02 1.56 16 32 H 0.08 1.61 7.63 -2.38 -0.02 1.59 16 33 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 40 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -62.93 365.96 5.92 -57.01 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.05 Total: 15.92 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.77 Total: -22.21 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.28 Total: -51.01 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.12 Total: -43.13 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -62.93 5.92 -57.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.909 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds