Wall clock time and date at job start Tue Mar 31 2020 14:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 O 1.42898 * 109.47148 * 179.97438 * 15 14 12 17 17 C 1.35900 * 117.00193 * 179.97438 * 16 15 14 18 18 C 1.38768 * 120.04663 * 359.72937 * 17 16 15 19 19 C 1.38124 * 119.96658 * 179.74369 * 18 17 16 20 20 C 1.38267 * 120.07114 * 0.54999 * 19 18 17 21 21 C 1.38362 * 120.09918 * 359.70288 * 20 19 18 22 22 Cl 1.73600 * 119.98984 * 180.02562 * 21 20 19 23 23 C 1.38292 * 120.02605 * 0.02562 * 21 20 19 24 24 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 25 25 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 26 26 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 28 28 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 29 29 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 30 30 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 31 31 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 32 32 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 33 33 H 1.07998 * 120.01457 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.96636 * 180.25305 * 19 18 17 35 35 H 1.07999 * 119.95309 * 179.71959 * 20 19 18 36 36 H 1.08001 * 120.03212 * 180.02562 * 23 21 20 37 37 H 1.09003 * 117.50064 * 359.97438 * 24 9 7 38 38 H 1.08997 * 117.50444 * 145.01778 * 24 9 7 39 39 H 1.08997 * 117.50286 * 214.97535 * 25 9 7 40 40 H 1.09000 * 117.49777 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 8 2.9460 -5.3501 6.3646 17 6 2.5491 -5.8843 7.5495 18 6 1.1975 -6.0300 7.8280 19 6 0.7960 -6.5781 9.0306 20 6 1.7392 -6.9713 9.9620 21 6 3.0875 -6.8225 9.6895 22 17 4.2694 -7.3177 10.8607 23 6 3.4941 -6.2794 8.4844 24 6 1.7501 -3.4765 -1.2119 25 6 0.4459 -2.7041 -1.4260 26 1 -0.4850 0.8401 0.0004 27 1 0.0685 -2.3412 1.6433 28 1 0.1031 -3.9677 0.9209 29 1 3.1883 -5.1437 3.7191 30 1 3.1533 -3.5170 4.4408 31 1 1.2822 -4.2112 5.9129 32 1 1.3175 -5.8376 5.1908 33 1 0.4599 -5.7192 7.1029 34 1 -0.2559 -6.6953 9.2456 35 1 1.4231 -7.3954 10.9036 36 1 4.5466 -6.1636 8.2714 37 1 2.6136 -3.1810 -1.8078 38 1 1.6739 -4.5408 -0.9896 39 1 -0.4877 -3.2606 -1.3445 40 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:01 Heat of formation + Delta-G solvation = -87.056741 kcal Electronic energy + Delta-G solvation = -23595.257328 eV Core-core repulsion = 19788.119328 eV Total energy + Delta-G solvation = -3807.138000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57230 -39.87224 -38.06881 -36.92154 -36.59613 -35.37697 -32.52000 -32.01247 -31.13556 -29.96626 -27.15785 -25.51075 -24.69289 -23.09156 -22.17098 -21.23831 -20.19407 -19.32485 -18.81357 -17.18803 -16.76545 -16.55245 -16.27757 -16.22117 -15.63344 -15.48599 -15.00104 -14.64598 -14.16466 -14.00911 -13.84353 -13.78246 -13.24787 -12.83826 -12.35616 -12.21989 -12.10703 -12.06079 -11.66903 -11.64086 -11.45982 -11.15768 -11.03690 -10.95600 -10.89784 -10.59426 -10.36032 -10.18770 -9.95838 -9.62518 -9.22716 -8.89069 -8.61262 -8.52704 -8.27382 -6.12289 -4.17729 0.75884 0.97982 1.66628 2.55504 2.59142 3.25473 3.26952 3.32866 3.35923 3.56238 4.34949 4.35835 4.54787 4.69035 4.72487 4.75002 4.88876 5.00975 5.07214 5.17249 5.20176 5.40406 5.48907 5.54119 5.60327 5.78171 5.90218 5.90908 5.99024 6.16788 6.18360 6.26037 6.44822 6.57661 6.67133 6.97196 7.01366 7.13416 7.29660 7.40039 7.81511 8.21968 8.34464 8.84401 9.48510 10.97100 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002024 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.722518 B =13831.289443 C =14276.929967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.116 3.884 11 O -0.333 6.333 12 C 0.462 3.538 13 O -0.526 6.526 14 C -0.115 4.115 15 C 0.072 3.928 16 O -0.310 6.310 17 C 0.150 3.850 18 C -0.203 4.203 19 C -0.066 4.066 20 C -0.152 4.152 21 C 0.002 3.998 22 Cl -0.065 7.065 23 C -0.147 4.147 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.262 0.738 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -13.746 17.331 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.035 3.965 10 C 0.043 3.957 11 O -0.247 6.247 12 C 0.305 3.695 13 O -0.417 6.417 14 C -0.153 4.153 15 C -0.003 4.003 16 O -0.223 6.223 17 C 0.104 3.896 18 C -0.222 4.222 19 C -0.084 4.084 20 C -0.171 4.171 21 C -0.024 4.024 22 Cl -0.036 7.036 23 C -0.166 4.166 24 C -0.242 4.242 25 C -0.183 4.183 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.649 -13.636 17.380 22.390 hybrid contribution 0.048 0.933 0.019 0.934 sum 3.697 -12.703 17.399 21.858 Atomic orbital electron populations 1.69994 1.05926 1.26784 1.49094 1.25028 0.94876 0.99150 0.94460 0.86574 0.79985 0.83161 0.78218 1.20537 1.21236 1.19691 1.20390 0.93112 0.88287 1.51007 0.91798 1.18790 0.98983 0.94270 0.84440 1.22961 0.85708 0.97079 0.89965 1.86514 1.41756 1.70617 1.25845 1.23012 0.89106 0.74733 0.82681 1.90635 1.21531 1.52425 1.77087 1.21041 0.97371 1.04627 0.92281 1.22550 0.88971 1.00587 0.88233 1.85983 1.35999 1.75667 1.24693 1.18732 0.92216 0.93059 0.85631 1.21526 0.94964 1.05710 1.00013 1.20931 0.99758 0.95468 0.92257 1.20965 0.90663 1.04270 1.01199 1.20554 0.90221 1.00654 0.91006 1.98381 1.57818 1.89821 1.57601 1.20206 1.00267 1.04176 0.91999 1.23011 0.98437 0.95682 1.07057 1.22551 0.92501 1.01281 1.01927 0.92858 0.90402 0.94170 0.86724 0.86469 0.90510 0.90641 0.84308 0.84631 0.84830 0.83991 0.90002 0.91514 0.91611 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.42 12.93 55.43 0.72 -23.70 16 2 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.49 -13.07 8.77 -34.44 -0.30 -13.37 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.86 1.61 -155.67 -0.25 0.61 16 10 C 0.12 2.65 5.28 37.15 0.20 2.85 16 11 O -0.33 -6.88 10.16 -39.26 -0.40 -7.28 16 12 C 0.46 8.03 7.96 36.01 0.29 8.32 16 13 O -0.53 -10.23 15.73 -18.75 -0.29 -10.53 16 14 C -0.12 -1.42 6.18 -27.88 -0.17 -1.59 16 15 C 0.07 0.81 4.03 37.16 0.15 0.96 16 16 O -0.31 -3.54 10.14 -19.43 -0.20 -3.74 16 17 C 0.15 1.61 6.69 -39.22 -0.26 1.34 16 18 C -0.20 -1.95 9.04 -39.43 -0.36 -2.30 16 19 C -0.07 -0.53 10.04 -39.61 -0.40 -0.93 16 20 C -0.15 -1.24 9.83 -39.53 -0.39 -1.63 16 21 C 0.00 0.02 6.32 -39.52 -0.25 -0.23 16 22 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.06 16 23 C -0.15 -1.47 9.77 -39.40 -0.38 -1.85 16 24 C -0.20 -4.33 9.96 -26.69 -0.27 -4.59 16 25 C -0.15 -3.28 9.43 -26.69 -0.25 -3.53 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 27 H 0.08 1.97 8.13 -51.93 -0.42 1.55 16 28 H 0.04 0.86 8.09 -51.92 -0.42 0.44 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 0.88 7.60 -51.93 -0.39 0.48 16 32 H 0.08 0.82 7.63 -51.93 -0.40 0.43 16 33 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 34 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -29.38 365.97 -9.24 -38.62 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.31 Total: 1.70 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.74 Total: -14.22 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.72 Total: -23.70 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.89 Total: -21.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.38 -9.24 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.439 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds