Wall clock time and date at job start Tue Mar 31 2020 14:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 O 1.42898 * 109.47148 * 179.97438 * 15 14 12 17 17 C 1.35900 * 117.00193 * 179.97438 * 16 15 14 18 18 C 1.38768 * 120.04663 * 359.72937 * 17 16 15 19 19 C 1.38124 * 119.96658 * 179.74369 * 18 17 16 20 20 C 1.38267 * 120.07114 * 0.54999 * 19 18 17 21 21 C 1.38362 * 120.09918 * 359.70288 * 20 19 18 22 22 Cl 1.73600 * 119.98984 * 180.02562 * 21 20 19 23 23 C 1.38292 * 120.02605 * 0.02562 * 21 20 19 24 24 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 25 25 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 26 26 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 28 28 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 29 29 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 30 30 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 31 31 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 32 32 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 33 33 H 1.07998 * 120.01457 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.96636 * 180.25305 * 19 18 17 35 35 H 1.07999 * 119.95309 * 179.71959 * 20 19 18 36 36 H 1.08001 * 120.03212 * 180.02562 * 23 21 20 37 37 H 1.09003 * 117.50064 * 359.97438 * 24 9 7 38 38 H 1.08997 * 117.50444 * 145.01778 * 24 9 7 39 39 H 1.08997 * 117.50286 * 214.97535 * 25 9 7 40 40 H 1.09000 * 117.49777 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 8 2.9460 -5.3501 6.3646 17 6 2.5491 -5.8843 7.5495 18 6 1.1975 -6.0300 7.8280 19 6 0.7960 -6.5781 9.0306 20 6 1.7392 -6.9713 9.9620 21 6 3.0875 -6.8225 9.6895 22 17 4.2694 -7.3177 10.8607 23 6 3.4941 -6.2794 8.4844 24 6 1.7501 -3.4765 -1.2119 25 6 0.4459 -2.7041 -1.4260 26 1 -0.4850 0.8401 0.0004 27 1 0.0685 -2.3412 1.6433 28 1 0.1031 -3.9677 0.9209 29 1 3.1883 -5.1437 3.7191 30 1 3.1533 -3.5170 4.4408 31 1 1.2822 -4.2112 5.9129 32 1 1.3175 -5.8376 5.1908 33 1 0.4599 -5.7192 7.1029 34 1 -0.2559 -6.6953 9.2456 35 1 1.4231 -7.3954 10.9036 36 1 4.5466 -6.1636 8.2714 37 1 2.6136 -3.1810 -1.8078 38 1 1.6739 -4.5408 -0.9896 39 1 -0.4877 -3.2606 -1.3445 40 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:00 Heat of formation + Delta-G solvation = -100.302277 kcal Electronic energy + Delta-G solvation = -23595.831698 eV Core-core repulsion = 19788.119328 eV Total energy + Delta-G solvation = -3807.712370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60139 -41.09049 -38.91238 -38.54255 -37.31139 -36.99689 -34.03277 -33.50846 -31.85512 -30.72545 -28.81195 -27.39762 -25.85295 -23.81222 -23.10054 -22.88737 -21.49508 -21.19545 -19.66121 -18.60017 -18.23053 -17.83600 -17.16686 -17.07255 -16.93967 -16.80907 -16.51853 -15.95912 -15.56418 -15.01156 -14.86210 -14.64722 -14.56976 -14.10256 -13.83135 -13.57741 -13.45418 -13.05011 -12.92610 -12.84440 -12.79562 -12.44836 -12.41123 -12.20089 -12.09377 -11.86734 -11.79011 -11.74145 -11.65922 -11.39828 -10.78947 -10.49954 -10.09276 -9.91920 -9.34657 -8.14933 -6.25797 0.06034 0.28258 0.95847 1.17595 1.41318 1.43301 1.47729 1.52703 2.39846 2.43611 2.57429 3.14356 3.40694 3.51682 3.75210 3.84310 3.90594 3.99419 4.11127 4.13848 4.16021 4.31278 4.38849 4.39522 4.48124 4.61251 4.64710 4.66731 4.79579 4.84319 4.97019 5.09958 5.18581 5.22799 5.32074 5.45114 5.50900 5.58050 5.68483 5.74602 6.21777 6.34921 6.75657 6.79874 7.43066 8.93868 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002024 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.722518 B =13831.289443 C =14276.929967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.001 3.999 10 C 0.128 3.872 11 O -0.345 6.345 12 C 0.459 3.541 13 O -0.549 6.549 14 C -0.104 4.104 15 C 0.078 3.922 16 O -0.317 6.317 17 C 0.129 3.871 18 C -0.212 4.212 19 C -0.064 4.064 20 C -0.150 4.150 21 C -0.006 4.006 22 Cl -0.061 7.061 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -14.741 18.308 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.055 3.945 11 O -0.260 6.260 12 C 0.304 3.696 13 O -0.440 6.440 14 C -0.141 4.141 15 C 0.003 3.997 16 O -0.231 6.231 17 C 0.084 3.916 18 C -0.230 4.230 19 C -0.082 4.082 20 C -0.168 4.168 21 C -0.033 4.033 22 Cl -0.032 7.032 23 C -0.176 4.176 24 C -0.214 4.214 25 C -0.186 4.186 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.371 -14.645 18.367 23.894 hybrid contribution -0.169 1.168 -0.191 1.195 sum 4.202 -13.477 18.175 23.014 Atomic orbital electron populations 1.70098 1.07105 1.27313 1.50186 1.25722 0.95613 1.02134 0.94339 0.85657 0.78865 0.79450 0.78328 1.19963 1.21223 1.19164 1.20641 0.92963 0.89790 1.50696 0.92585 1.18910 1.00571 0.94820 0.85636 1.22534 0.85871 0.96466 0.89652 1.86510 1.41018 1.71367 1.27116 1.23923 0.90077 0.73491 0.82065 1.90622 1.22989 1.53225 1.77204 1.21069 0.95792 1.05810 0.91448 1.22419 0.88862 1.00583 0.87877 1.85938 1.35902 1.76116 1.25097 1.18917 0.92973 0.94152 0.85606 1.21683 0.94590 1.05946 1.00812 1.21257 1.01153 0.94372 0.91444 1.21273 0.90197 1.03392 1.01958 1.20697 0.90891 1.00765 0.90937 1.98381 1.57783 1.89747 1.57286 1.20312 1.00433 1.04511 0.92324 1.23021 0.97453 0.96453 1.04438 1.22488 0.93938 1.01378 1.00747 0.93010 0.93942 0.92995 0.84288 0.85198 0.90971 0.90303 0.84081 0.82043 0.82761 0.83753 0.89630 0.88899 0.90326 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.24 12.93 21.45 0.28 -50.96 16 2 C 0.02 1.20 5.39 84.66 0.46 1.66 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.50 -26.97 8.77 25.60 0.22 -26.74 16 8 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 9 C 0.00 0.05 1.61 -52.93 -0.08 -0.03 16 10 C 0.13 5.92 5.28 71.98 0.38 6.30 16 11 O -0.34 -14.15 10.16 -51.44 -0.52 -14.68 16 12 C 0.46 15.71 7.96 71.24 0.57 16.27 16 13 O -0.55 -21.31 15.73 21.97 0.35 -20.96 16 14 C -0.10 -2.40 6.18 29.85 0.18 -2.22 16 15 C 0.08 1.68 4.03 71.98 0.29 1.97 16 16 O -0.32 -6.91 10.14 -92.43 -0.94 -7.85 16 17 C 0.13 2.66 6.69 22.50 0.15 2.81 16 18 C -0.21 -3.79 9.04 22.37 0.20 -3.59 16 19 C -0.06 -0.90 10.04 22.25 0.22 -0.68 16 20 C -0.15 -2.14 9.83 22.31 0.22 -1.92 16 21 C -0.01 -0.11 6.32 22.31 0.14 0.04 16 22 Cl -0.06 -0.96 28.95 -2.72 -0.08 -1.04 16 23 C -0.16 -2.99 9.77 22.39 0.22 -2.77 16 24 C -0.18 -7.19 9.96 30.62 0.30 -6.88 16 25 C -0.15 -6.65 9.43 30.62 0.29 -6.36 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.04 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.05 2.21 8.09 -2.38 -0.02 2.19 16 29 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 1.61 7.60 -2.39 -0.02 1.59 16 32 H 0.08 1.64 7.63 -2.38 -0.02 1.62 16 33 H 0.14 2.39 6.30 -2.91 -0.02 2.38 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -63.00 365.97 5.92 -57.08 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.05 Total: 15.87 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.77 Total: -22.17 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.28 Total: -50.96 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.11 Total: -43.49 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -63.00 5.92 -57.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.223 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds