Wall clock time and date at job start Tue Mar 31 2020 14:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48505 * 109.46814 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47338 * 299.99739 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00214 * 3 2 1 7 7 C 1.37877 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 173.70217 * 7 2 1 9 9 C 1.50704 * 119.99773 * 353.70482 * 7 2 1 10 10 C 1.52998 * 115.55019 * 86.11299 * 9 7 2 11 11 O 1.45198 * 109.47003 * 65.10465 * 10 9 7 12 12 C 1.34236 * 117.00256 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99262 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00420 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46963 * 180.02562 * 14 12 11 16 16 O 1.42902 * 109.46912 * 180.02562 * 15 14 12 17 17 C 1.35923 * 117.00059 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.05855 * 359.95187 * 17 16 15 19 19 C 1.38148 * 119.96021 * 180.02562 * 18 17 16 20 20 C 1.38284 * 120.07260 * 0.02562 * 19 18 17 21 21 C 1.38237 * 120.12163 * 0.02927 * 20 19 18 22 22 C 1.38260 * 120.04265 * 359.95025 * 21 20 19 23 23 Cl 1.73602 * 120.04097 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49266 * 231.77997 * 9 7 2 25 25 C 1.52993 * 117.49674 * 300.43901 * 9 7 2 26 26 H 0.96999 * 119.99392 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47156 * 305.10433 * 10 9 7 28 28 H 1.08997 * 109.46926 * 185.10210 * 10 9 7 29 29 H 1.08997 * 109.46867 * 60.00187 * 14 12 11 30 30 H 1.08997 * 109.46726 * 299.99938 * 14 12 11 31 31 H 1.08997 * 109.47457 * 59.99604 * 15 14 12 32 32 H 1.09004 * 109.46773 * 299.99637 * 15 14 12 33 33 H 1.08000 * 120.02393 * 0.04577 * 18 17 16 34 34 H 1.07998 * 119.96561 * 180.29777 * 19 18 17 35 35 H 1.08007 * 119.93742 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.98030 * 179.97438 * 21 20 19 37 37 H 1.09008 * 117.49605 * 215.00439 * 24 9 7 38 38 H 1.08992 * 117.50491 * 0.02562 * 24 9 7 39 39 H 1.08995 * 117.50206 * 359.97438 * 25 9 7 40 40 H 1.09005 * 117.49654 * 144.98092 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1420 10 6 0.7192 -3.0930 -1.1594 11 8 1.8300 -3.4641 -2.0176 12 6 1.5262 -4.0079 -3.2067 13 8 0.3703 -4.1680 -3.5201 14 6 2.6267 -4.4176 -4.1512 15 6 2.0139 -5.0040 -5.4246 16 8 3.0575 -5.3931 -6.3199 17 6 2.6810 -5.9373 -7.5072 18 6 1.3351 -6.0945 -7.8037 19 6 0.9548 -6.6483 -9.0108 20 6 1.9143 -7.0467 -9.9234 21 6 3.2565 -6.8926 -9.6307 22 6 3.6426 -6.3384 -8.4243 23 17 5.3282 -6.1443 -8.0570 24 6 1.7339 -3.4683 1.2225 25 6 0.4252 -2.6967 1.4097 26 1 -0.4849 0.8401 -0.0004 27 1 0.0976 -2.3559 -1.6678 28 1 0.1232 -3.9773 -0.9337 29 1 3.2563 -5.1673 -3.6720 30 1 3.2296 -3.5461 -4.4064 31 1 1.3845 -4.2541 -5.9036 32 1 1.4108 -5.8754 -5.1695 33 1 0.5850 -5.7838 -7.0916 34 1 -0.0932 -6.7663 -9.2438 35 1 1.6144 -7.4798 -10.8663 36 1 4.0040 -7.2049 -10.3450 37 1 1.6635 -4.5343 1.0061 38 1 2.5870 -3.1672 1.8304 39 1 0.4179 -1.8884 2.1408 40 1 -0.5065 -3.2548 1.3165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:25 Heat of formation + Delta-G solvation = -85.247911 kcal Electronic energy + Delta-G solvation = -23827.019296 eV Core-core repulsion = 20019.959732 eV Total energy + Delta-G solvation = -3807.059563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55512 -39.85596 -37.89695 -36.87390 -36.56793 -35.36339 -32.44405 -31.99678 -31.13697 -29.90263 -27.14722 -25.51005 -24.72842 -22.89350 -22.26384 -21.22166 -20.17105 -19.31318 -18.77761 -17.20381 -16.75765 -16.59597 -16.31027 -16.24262 -15.62703 -15.33341 -14.81327 -14.62862 -14.21229 -14.00383 -13.84733 -13.75005 -13.13860 -12.65462 -12.34179 -12.20199 -12.03074 -11.98996 -11.69170 -11.64958 -11.32127 -11.03325 -11.01665 -11.00004 -10.89270 -10.56181 -10.34467 -10.16986 -9.94950 -9.61629 -9.23566 -8.86880 -8.51375 -8.50514 -8.26280 -6.11321 -4.16702 0.80081 0.98578 1.94595 2.50476 2.59668 3.25178 3.29078 3.33959 3.38324 3.53974 4.36011 4.39376 4.46728 4.67811 4.76511 4.77675 4.90352 5.03225 5.12866 5.18404 5.23666 5.37617 5.48202 5.56854 5.63303 5.76244 5.86118 5.91557 6.06958 6.18151 6.27165 6.29111 6.45936 6.58863 6.68762 6.97845 6.98739 7.14533 7.31120 7.41850 7.82718 8.23489 8.35798 8.85858 9.49662 10.98042 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.002337 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.760064 B =11978.570471 C =12369.218934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.490 4.490 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.116 3.884 11 O -0.333 6.333 12 C 0.462 3.538 13 O -0.526 6.526 14 C -0.115 4.115 15 C 0.071 3.929 16 O -0.303 6.303 17 C 0.146 3.854 18 C -0.198 4.198 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.075 4.075 22 C -0.072 4.072 23 Cl -0.057 7.057 24 C -0.205 4.205 25 C -0.144 4.144 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -14.030 -17.548 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.528 4.528 8 H 0.083 0.917 9 C 0.035 3.965 10 C 0.043 3.957 11 O -0.247 6.247 12 C 0.305 3.695 13 O -0.417 6.417 14 C -0.153 4.153 15 C -0.004 4.004 16 O -0.216 6.216 17 C 0.099 3.901 18 C -0.216 4.216 19 C -0.092 4.092 20 C -0.169 4.169 21 C -0.094 4.094 22 C -0.099 4.099 23 Cl -0.029 7.029 24 C -0.242 4.242 25 C -0.181 4.181 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.012 -13.855 -17.448 22.639 hybrid contribution 0.050 0.995 0.086 1.000 sum 4.062 -12.861 -17.363 21.985 Atomic orbital electron populations 1.70011 1.05924 1.26649 1.49230 1.25026 0.94871 0.99152 0.94458 0.86525 0.80343 0.83506 0.77636 1.19530 1.20991 1.20897 1.20437 0.93178 0.88288 1.50859 0.91748 1.18790 0.99084 0.94286 0.84346 1.22961 0.85271 0.96995 0.90475 1.86518 1.41594 1.70255 1.26379 1.23021 0.89229 0.74759 0.82485 1.90632 1.22163 1.52619 1.76293 1.21029 0.97209 1.04567 0.92455 1.22553 0.88663 1.00473 0.88693 1.86064 1.35573 1.74997 1.24926 1.18668 0.91982 0.93709 0.85761 1.21391 0.94191 1.05957 1.00108 1.21092 1.00133 0.95434 0.92588 1.21034 0.91992 1.03264 1.00567 1.20921 0.96984 0.97216 0.94240 1.20226 0.85106 1.08571 0.96021 1.98375 1.13411 1.96314 1.94756 1.23018 0.98587 0.95694 1.06919 1.22539 0.92301 1.01223 1.02072 0.92931 0.90490 0.94164 0.86706 0.86463 0.90526 0.90661 0.84106 0.85048 0.85001 0.84399 0.91533 0.90000 0.89360 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 12.88 55.43 0.71 -23.85 16 2 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -13.17 8.78 -34.44 -0.30 -13.48 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.04 0.86 1.62 -155.66 -0.25 0.61 16 10 C 0.12 2.68 5.29 37.16 0.20 2.87 16 11 O -0.33 -6.98 10.16 -39.27 -0.40 -7.38 16 12 C 0.46 8.18 7.96 36.01 0.29 8.47 16 13 O -0.53 -10.36 15.73 -18.75 -0.29 -10.66 16 14 C -0.11 -1.47 6.18 -27.88 -0.17 -1.65 16 15 C 0.07 0.84 4.03 37.16 0.15 0.99 16 16 O -0.30 -3.70 9.60 -19.50 -0.19 -3.88 16 17 C 0.15 1.66 6.68 -39.20 -0.26 1.39 16 18 C -0.20 -1.94 9.04 -39.44 -0.36 -2.29 16 19 C -0.07 -0.59 10.04 -39.60 -0.40 -0.99 16 20 C -0.15 -1.10 10.04 -39.56 -0.40 -1.49 16 21 C -0.07 -0.62 9.83 -39.57 -0.39 -1.01 16 22 C -0.07 -0.76 6.33 -39.36 -0.25 -1.01 16 23 Cl -0.06 -0.62 28.50 -51.86 -1.48 -2.10 16 24 C -0.20 -4.38 9.96 -26.69 -0.27 -4.64 16 25 C -0.14 -3.28 9.37 -26.70 -0.25 -3.53 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.96 8.13 -51.93 -0.42 1.54 16 28 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 32 H 0.08 0.85 7.62 -51.93 -0.40 0.45 16 33 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -30.09 365.17 -9.24 -39.33 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.31 Total: 1.23 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.76 Total: -14.02 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.71 Total: -23.85 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.88 Total: -21.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.09 -9.24 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.922 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds