Wall clock time and date at job start Tue Mar 31 2020 14:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48505 * 109.46814 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47338 * 299.99739 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00214 * 3 2 1 7 7 C 1.37877 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 173.70217 * 7 2 1 9 9 C 1.50704 * 119.99773 * 353.70482 * 7 2 1 10 10 C 1.52998 * 115.55019 * 86.11299 * 9 7 2 11 11 O 1.45198 * 109.47003 * 65.10465 * 10 9 7 12 12 C 1.34236 * 117.00256 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99262 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00420 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46963 * 180.02562 * 14 12 11 16 16 O 1.42902 * 109.46912 * 180.02562 * 15 14 12 17 17 C 1.35923 * 117.00059 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.05855 * 359.95187 * 17 16 15 19 19 C 1.38148 * 119.96021 * 180.02562 * 18 17 16 20 20 C 1.38284 * 120.07260 * 0.02562 * 19 18 17 21 21 C 1.38237 * 120.12163 * 0.02927 * 20 19 18 22 22 C 1.38260 * 120.04265 * 359.95025 * 21 20 19 23 23 Cl 1.73602 * 120.04097 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49266 * 231.77997 * 9 7 2 25 25 C 1.52993 * 117.49674 * 300.43901 * 9 7 2 26 26 H 0.96999 * 119.99392 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47156 * 305.10433 * 10 9 7 28 28 H 1.08997 * 109.46926 * 185.10210 * 10 9 7 29 29 H 1.08997 * 109.46867 * 60.00187 * 14 12 11 30 30 H 1.08997 * 109.46726 * 299.99938 * 14 12 11 31 31 H 1.08997 * 109.47457 * 59.99604 * 15 14 12 32 32 H 1.09004 * 109.46773 * 299.99637 * 15 14 12 33 33 H 1.08000 * 120.02393 * 0.04577 * 18 17 16 34 34 H 1.07998 * 119.96561 * 180.29777 * 19 18 17 35 35 H 1.08007 * 119.93742 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.98030 * 179.97438 * 21 20 19 37 37 H 1.09008 * 117.49605 * 215.00439 * 24 9 7 38 38 H 1.08992 * 117.50491 * 0.02562 * 24 9 7 39 39 H 1.08995 * 117.50206 * 359.97438 * 25 9 7 40 40 H 1.09005 * 117.49654 * 144.98092 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1031 9 6 1.2577 -2.4953 0.1420 10 6 0.7192 -3.0930 -1.1594 11 8 1.8300 -3.4641 -2.0176 12 6 1.5262 -4.0079 -3.2067 13 8 0.3703 -4.1680 -3.5201 14 6 2.6267 -4.4176 -4.1512 15 6 2.0139 -5.0040 -5.4246 16 8 3.0575 -5.3931 -6.3199 17 6 2.6810 -5.9373 -7.5072 18 6 1.3351 -6.0945 -7.8037 19 6 0.9548 -6.6483 -9.0108 20 6 1.9143 -7.0467 -9.9234 21 6 3.2565 -6.8926 -9.6307 22 6 3.6426 -6.3384 -8.4243 23 17 5.3282 -6.1443 -8.0570 24 6 1.7339 -3.4683 1.2225 25 6 0.4252 -2.6967 1.4097 26 1 -0.4849 0.8401 -0.0004 27 1 0.0976 -2.3559 -1.6678 28 1 0.1232 -3.9773 -0.9337 29 1 3.2563 -5.1673 -3.6720 30 1 3.2296 -3.5461 -4.4064 31 1 1.3845 -4.2541 -5.9036 32 1 1.4108 -5.8754 -5.1695 33 1 0.5850 -5.7838 -7.0916 34 1 -0.0932 -6.7663 -9.2438 35 1 1.6144 -7.4798 -10.8663 36 1 4.0040 -7.2049 -10.3450 37 1 1.6635 -4.5343 1.0061 38 1 2.5870 -3.1672 1.8304 39 1 0.4179 -1.8884 2.1408 40 1 -0.5065 -3.2548 1.3165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:24 Heat of formation + Delta-G solvation = -99.274544 kcal Electronic energy + Delta-G solvation = -23827.627536 eV Core-core repulsion = 20019.959732 eV Total energy + Delta-G solvation = -3807.667804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61078 -41.08665 -38.83007 -38.46688 -37.33189 -37.01854 -34.03672 -33.48472 -31.80618 -30.67336 -28.81943 -27.40752 -25.90626 -23.62656 -23.14508 -22.92027 -21.50397 -21.20342 -19.64523 -18.61627 -18.23703 -17.85595 -17.28608 -17.08113 -16.96793 -16.82266 -16.51827 -15.68917 -15.45827 -15.02817 -14.88597 -14.70916 -14.62042 -14.02095 -13.82541 -13.56955 -13.27884 -12.98544 -12.91491 -12.85852 -12.81925 -12.44228 -12.38876 -12.10313 -12.09777 -11.90187 -11.79342 -11.74001 -11.68321 -11.41385 -10.78700 -10.50741 -10.10006 -9.91754 -9.24744 -8.15759 -6.26711 0.12700 0.29874 1.15502 1.18106 1.38675 1.41242 1.42762 1.53614 2.34767 2.41740 2.62697 3.13462 3.40020 3.49802 3.75120 3.82104 3.85580 3.97861 4.12878 4.14423 4.30251 4.33468 4.37948 4.44177 4.47866 4.59245 4.63960 4.66443 4.78063 4.83144 4.96648 5.09455 5.18126 5.25750 5.43823 5.44322 5.57678 5.66633 5.67357 5.74005 6.16646 6.34348 6.74129 6.79219 7.42344 8.93218 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.002337 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.760064 B =11978.570471 C =12369.218934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.002 3.998 10 C 0.129 3.871 11 O -0.345 6.345 12 C 0.460 3.540 13 O -0.548 6.548 14 C -0.104 4.104 15 C 0.079 3.921 16 O -0.313 6.313 17 C 0.119 3.881 18 C -0.209 4.209 19 C -0.075 4.075 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.089 4.089 23 Cl -0.068 7.068 24 C -0.178 4.178 25 C -0.146 4.146 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -15.212 -18.960 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.001 3.999 10 C 0.055 3.945 11 O -0.260 6.260 12 C 0.305 3.695 13 O -0.439 6.439 14 C -0.141 4.141 15 C 0.003 3.997 16 O -0.227 6.227 17 C 0.073 3.927 18 C -0.228 4.228 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.095 4.095 22 C -0.116 4.116 23 Cl -0.039 7.039 24 C -0.215 4.215 25 C -0.184 4.184 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.588 -15.052 -18.871 24.571 hybrid contribution -0.149 1.281 0.413 1.354 sum 4.439 -13.771 -18.458 23.453 Atomic orbital electron populations 1.70109 1.07096 1.27264 1.50227 1.25716 0.95613 1.02121 0.94294 0.85607 0.79341 0.79796 0.77569 1.18982 1.20916 1.20428 1.20679 0.92983 0.89846 1.50675 0.92656 1.18900 1.00657 0.94790 0.85539 1.22543 0.85463 0.96414 0.90083 1.86515 1.40864 1.70997 1.27663 1.23884 0.90196 0.73552 0.81822 1.90618 1.23557 1.53375 1.76399 1.21049 0.95601 1.05608 0.91820 1.22404 0.88545 1.00434 0.88274 1.86012 1.35567 1.75599 1.25527 1.18927 0.92941 0.95117 0.85749 1.21536 0.93603 1.06507 1.01122 1.21459 1.01727 0.94321 0.91793 1.21448 0.91273 1.01836 1.01432 1.21262 0.98174 0.96359 0.93673 1.20489 0.84553 1.09663 0.96926 1.98364 1.14192 1.96454 1.94922 1.23027 0.97594 0.96487 1.04347 1.22476 0.93706 1.01292 1.00889 0.92988 0.93996 0.92961 0.84471 0.85365 0.91001 0.90343 0.84153 0.82593 0.81804 0.82359 0.88933 0.89659 0.91239 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.54 12.88 21.45 0.28 -51.26 16 2 C 0.02 1.24 5.38 84.65 0.46 1.70 16 3 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.50 -27.34 8.78 25.60 0.22 -27.12 16 8 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 9 C 0.00 0.08 1.62 -52.93 -0.09 -0.01 16 10 C 0.13 5.99 5.29 71.98 0.38 6.37 16 11 O -0.35 -14.45 10.16 -51.47 -0.52 -14.98 16 12 C 0.46 16.19 7.96 71.24 0.57 16.76 16 13 O -0.55 -21.68 15.73 21.96 0.35 -21.34 16 14 C -0.10 -2.55 6.18 29.85 0.18 -2.37 16 15 C 0.08 1.82 4.03 71.98 0.29 2.11 16 16 O -0.31 -7.51 9.60 -92.69 -0.89 -8.40 16 17 C 0.12 2.63 6.68 22.52 0.15 2.78 16 18 C -0.21 -3.88 9.04 22.36 0.20 -3.68 16 19 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16 20 C -0.14 -1.64 10.04 22.28 0.22 -1.42 16 21 C -0.08 -1.11 9.83 22.27 0.22 -0.89 16 22 C -0.09 -1.81 6.33 22.41 0.14 -1.66 16 23 Cl -0.07 -1.44 28.50 -2.72 -0.08 -1.51 16 24 C -0.18 -7.33 9.96 30.62 0.30 -7.02 16 25 C -0.15 -6.64 9.37 30.62 0.29 -6.35 16 26 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.04 2.21 8.13 -2.39 -0.02 2.19 16 28 H 0.05 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.07 1.70 7.62 -2.39 -0.02 1.68 16 32 H 0.08 1.74 7.62 -2.38 -0.02 1.72 16 33 H 0.14 2.52 6.30 -2.91 -0.02 2.50 16 34 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -65.21 365.17 5.97 -59.24 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.05 Total: 14.75 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.77 Total: -21.59 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.28 Total: -51.26 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.07 Total: -44.72 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -65.21 5.97 -59.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.037 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds