Wall clock time and date at job start Tue Mar 31 2020 14:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 110.54397 * 2 1 4 4 O 1.42103 * 110.54379 * 223.24637 * 2 1 3 5 5 C 1.76204 * 104.44944 * 111.62333 * 2 1 3 6 6 C 1.37963 * 120.07928 * 115.02501 * 5 2 1 7 7 C 1.38342 * 120.15528 * 180.02562 * 6 5 2 8 8 C 1.38392 * 120.30177 * 359.95372 * 7 6 5 9 9 C 1.37930 * 120.14808 * 359.97438 * 8 7 6 10 10 C 1.39608 * 120.07452 * 295.00169 * 5 2 1 11 11 C 1.47727 * 120.14963 * 0.25197 * 10 5 2 12 12 O 1.21468 * 119.99870 * 358.94238 * 11 10 5 13 13 O 1.34713 * 119.99811 * 178.94493 * 11 10 5 14 14 C 1.45204 * 116.99859 * 185.10816 * 13 11 10 15 15 C 1.53000 * 109.47256 * 184.86422 * 14 13 11 16 16 C 1.50696 * 115.55043 * 305.31725 * 15 14 13 17 17 H 1.07994 * 120.00349 * 145.00379 * 16 15 14 18 18 C 1.37882 * 120.00061 * 324.99106 * 16 15 14 19 19 N 1.31519 * 119.99767 * 3.16559 * 18 16 15 20 20 Si 1.86792 * 120.00306 * 183.16293 * 18 16 15 21 21 H 1.48498 * 109.47065 * 60.00046 * 20 18 16 22 22 H 1.48502 * 109.47349 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47248 * 300.00278 * 20 18 16 24 24 C 1.52999 * 117.49763 * 159.63616 * 15 14 13 25 25 C 1.52998 * 117.49391 * 90.97938 * 15 14 13 26 26 H 1.08997 * 109.47080 * 308.37743 * 1 2 3 27 27 H 1.08995 * 109.46821 * 68.37853 * 1 2 3 28 28 H 1.09002 * 109.46948 * 188.37479 * 1 2 3 29 29 H 1.08001 * 119.92018 * 359.97438 * 6 5 2 30 30 H 1.07993 * 119.85407 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.93121 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.07600 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.46934 * 304.86967 * 14 13 11 34 34 H 1.09003 * 109.46857 * 64.86287 * 14 13 11 35 35 H 0.96995 * 119.99890 * 184.99604 * 19 18 16 36 36 H 1.09000 * 117.50136 * 0.02562 * 24 15 14 37 37 H 1.09002 * 117.49104 * 145.02237 * 24 15 14 38 38 H 1.09005 * 117.49779 * 214.98145 * 25 15 14 39 39 H 1.08999 * 117.50353 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.9152 -1.8347 1.6929 7 6 3.2607 -2.3301 2.9375 8 6 2.9466 -1.6204 4.0833 9 6 2.2867 -0.4127 3.9911 10 6 1.9338 0.0925 2.7380 11 6 1.2210 1.3821 2.6318 12 8 0.9289 1.8264 1.5397 13 8 0.8950 2.0652 3.7462 14 6 0.0967 3.2657 3.5735 15 6 -0.0693 3.9664 4.9235 16 6 -0.6340 3.1160 6.0321 17 1 -0.2950 3.2576 7.0476 18 6 -1.5839 2.1572 5.7498 19 7 -1.9515 1.9420 4.5055 20 14 -2.3485 1.1638 7.1346 21 1 -3.0339 2.0801 8.0811 22 1 -3.3335 0.2058 6.5713 23 1 -1.2855 0.4154 7.8524 24 6 -0.4464 5.4491 4.9083 25 6 0.9698 5.0232 5.3033 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 3.1633 -2.3937 0.8027 30 1 3.7781 -3.2748 3.0154 31 1 3.2196 -2.0125 5.0519 32 1 2.0418 0.1400 4.8861 33 1 0.5962 3.9368 2.8748 34 1 -0.8839 2.9966 3.1808 35 1 -2.6704 1.3200 4.3129 36 1 -0.5766 5.9253 3.9365 37 1 -1.1028 5.8095 5.7003 38 1 1.2446 5.1037 6.3551 39 1 1.7719 5.2190 4.5917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:55 Heat of formation + Delta-G solvation = -77.002232 kcal Electronic energy + Delta-G solvation = -26190.958572 eV Core-core repulsion = 22386.300275 eV Total energy + Delta-G solvation = -3804.658298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20350 -38.61777 -37.10153 -36.49141 -35.57956 -35.15938 -32.27778 -31.55739 -31.32167 -29.17261 -26.77421 -25.54018 -24.02493 -23.09507 -21.34058 -20.69717 -19.28155 -18.79416 -17.96883 -16.99305 -16.72817 -16.01282 -15.83632 -15.68612 -15.55673 -15.00697 -14.75562 -14.50538 -14.24316 -13.78002 -13.37969 -13.05447 -12.92232 -12.81191 -12.49694 -12.06216 -11.99610 -11.74273 -11.69635 -11.56409 -11.35140 -11.11979 -10.94759 -10.79753 -10.58216 -10.45504 -10.41200 -10.05032 -9.63032 -9.48821 -9.45010 -9.10446 -9.06030 -8.84658 -8.33209 -6.10528 -4.22202 0.27459 0.56023 1.04256 2.81024 3.05386 3.19254 3.25509 3.27704 3.28626 3.62622 4.06663 4.26148 4.46112 4.75501 4.81305 4.82842 4.98316 5.07330 5.14622 5.30534 5.44896 5.45495 5.54291 5.81304 5.95855 5.99754 6.05499 6.07825 6.16284 6.23301 6.42110 6.53884 6.59331 6.67492 6.72515 6.89743 7.17785 7.35347 7.37471 7.80498 8.21792 8.38287 8.75657 9.39844 10.85538 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.004965 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.373481 B = 5638.658426 C = 6368.991646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.510 3.490 3 O -0.909 6.909 4 O -0.962 6.962 5 C -0.614 4.614 6 C -0.039 4.039 7 C -0.117 4.117 8 C -0.083 4.083 9 C -0.076 4.076 10 C -0.023 4.023 11 C 0.480 3.520 12 O -0.500 6.500 13 O -0.302 6.302 14 C 0.117 3.883 15 C 0.042 3.958 16 C -0.477 4.477 17 H 0.062 0.938 18 C 0.073 3.927 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.193 4.193 25 C -0.209 4.209 26 H 0.152 0.848 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.030 0.970 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -8.473 -4.278 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.688 3.312 3 O -0.907 6.907 4 O -0.959 6.959 5 C -0.698 4.698 6 C -0.058 4.058 7 C -0.136 4.136 8 C -0.101 4.101 9 C -0.095 4.095 10 C -0.025 4.025 11 C 0.325 3.675 12 O -0.394 6.394 13 O -0.215 6.215 14 C 0.044 3.956 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.080 0.920 18 C -0.129 4.129 19 N -0.525 5.525 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.231 4.231 25 C -0.246 4.246 26 H 0.170 0.830 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.048 0.952 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.330 -8.215 -5.274 11.635 hybrid contribution -0.965 -0.649 1.514 1.909 sum 5.365 -8.864 -3.760 11.022 Atomic orbital electron populations 1.30344 1.24655 1.11246 1.13033 1.04957 0.78386 0.74529 0.73353 1.93637 1.77264 1.34952 1.84801 1.93516 1.78552 1.62914 1.60936 1.30876 1.12362 1.05684 1.20864 1.20943 0.93199 0.92480 0.99154 1.21506 0.99435 1.00203 0.92435 1.21499 0.95384 0.94006 0.99209 1.21794 0.94581 0.95407 0.97733 1.18941 0.97581 0.92208 0.93726 1.21100 0.77703 0.84711 0.83986 1.90810 1.52171 1.68725 1.27660 1.86505 1.63729 1.39183 1.32101 1.23088 0.95502 0.80380 0.96595 1.18946 0.96473 0.86646 0.93810 1.20449 1.22197 1.16296 0.92448 0.92001 1.24933 0.96502 0.95860 0.95593 1.69749 1.28760 1.36528 1.17505 0.86565 0.79051 0.79839 0.82019 1.20175 1.21214 1.20092 1.22990 0.97627 1.01844 1.00626 1.22973 0.91842 1.09561 1.00261 0.82993 0.85416 0.86292 0.83234 0.84721 0.84528 0.82836 0.95161 0.86079 0.92705 0.91276 0.89746 0.90288 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -8.61 10.14 101.05 1.02 -7.59 16 2 S 2.51 39.19 5.14 -107.50 -0.55 38.64 16 3 O -0.91 -17.86 14.83 -67.51 -1.00 -18.86 16 4 O -0.96 -15.43 16.74 -57.54 -0.96 -16.40 16 5 C -0.61 -9.45 5.61 -39.17 -0.22 -9.67 16 6 C -0.04 -0.49 9.49 -39.64 -0.38 -0.87 16 7 C -0.12 -1.25 10.04 -39.49 -0.40 -1.65 16 8 C -0.08 -0.97 10.03 -39.64 -0.40 -1.36 16 9 C -0.08 -1.16 9.62 -39.17 -0.38 -1.53 16 10 C -0.02 -0.39 5.86 -104.98 -0.62 -1.01 16 11 C 0.48 9.91 7.46 34.61 0.26 10.17 16 12 O -0.50 -10.59 8.79 -27.60 -0.24 -10.83 16 13 O -0.30 -6.88 9.03 -40.53 -0.37 -7.25 16 14 C 0.12 2.76 4.45 37.16 0.17 2.93 16 15 C 0.04 0.99 2.20 -155.66 -0.34 0.65 16 16 C -0.48 -12.18 8.80 -34.44 -0.30 -12.49 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.85 5.35 -17.82 -0.10 1.75 16 19 N -0.89 -22.80 10.19 55.43 0.56 -22.23 16 20 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.19 -4.12 9.96 -26.70 -0.27 -4.39 16 25 C -0.21 -4.41 9.93 -26.70 -0.26 -4.67 16 26 H 0.15 2.43 5.43 -51.93 -0.28 2.15 16 27 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.12 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.15 1.61 7.21 -52.49 -0.38 1.23 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 2.39 7.61 -52.49 -0.40 1.99 16 33 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.12 3.07 5.90 -51.93 -0.31 2.77 16 35 H 0.26 6.51 8.32 -40.82 -0.34 6.17 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -31.24 339.68 -9.37 -40.61 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.70 Total: 6.17 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -2.21 Total: -29.73 kcal Atomic # 7 Polarization: -22.80 SS G_CDS: 0.56 Total: -22.23 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -2.57 Total: -53.33 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 39.19 SS G_CDS: -0.55 Total: 38.64 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.24 -9.37 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.388 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds