Wall clock time and date at job start Tue Mar 31 2020 14:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 110.54397 * 2 1 4 4 O 1.42103 * 110.54379 * 223.24637 * 2 1 3 5 5 C 1.76204 * 104.44944 * 111.62333 * 2 1 3 6 6 C 1.37963 * 120.07928 * 115.02501 * 5 2 1 7 7 C 1.38342 * 120.15528 * 180.02562 * 6 5 2 8 8 C 1.38392 * 120.30177 * 359.95372 * 7 6 5 9 9 C 1.37930 * 120.14808 * 359.97438 * 8 7 6 10 10 C 1.39608 * 120.07452 * 295.00169 * 5 2 1 11 11 C 1.47727 * 120.14963 * 0.25197 * 10 5 2 12 12 O 1.21468 * 119.99870 * 358.94238 * 11 10 5 13 13 O 1.34713 * 119.99811 * 178.94493 * 11 10 5 14 14 C 1.45204 * 116.99859 * 185.10816 * 13 11 10 15 15 C 1.53000 * 109.47256 * 184.86422 * 14 13 11 16 16 C 1.50696 * 115.55043 * 305.31725 * 15 14 13 17 17 H 1.07994 * 120.00349 * 145.00379 * 16 15 14 18 18 C 1.37882 * 120.00061 * 324.99106 * 16 15 14 19 19 N 1.31519 * 119.99767 * 3.16559 * 18 16 15 20 20 Si 1.86792 * 120.00306 * 183.16293 * 18 16 15 21 21 H 1.48498 * 109.47065 * 60.00046 * 20 18 16 22 22 H 1.48502 * 109.47349 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47248 * 300.00278 * 20 18 16 24 24 C 1.52999 * 117.49763 * 159.63616 * 15 14 13 25 25 C 1.52998 * 117.49391 * 90.97938 * 15 14 13 26 26 H 1.08997 * 109.47080 * 308.37743 * 1 2 3 27 27 H 1.08995 * 109.46821 * 68.37853 * 1 2 3 28 28 H 1.09002 * 109.46948 * 188.37479 * 1 2 3 29 29 H 1.08001 * 119.92018 * 359.97438 * 6 5 2 30 30 H 1.07993 * 119.85407 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.93121 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.07600 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.46934 * 304.86967 * 14 13 11 34 34 H 1.09003 * 109.46857 * 64.86287 * 14 13 11 35 35 H 0.96995 * 119.99890 * 184.99604 * 19 18 16 36 36 H 1.09000 * 117.50136 * 0.02562 * 24 15 14 37 37 H 1.09002 * 117.49104 * 145.02237 * 24 15 14 38 38 H 1.09005 * 117.49779 * 214.98145 * 25 15 14 39 39 H 1.08999 * 117.50353 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.9152 -1.8347 1.6929 7 6 3.2607 -2.3301 2.9375 8 6 2.9466 -1.6204 4.0833 9 6 2.2867 -0.4127 3.9911 10 6 1.9338 0.0925 2.7380 11 6 1.2210 1.3821 2.6318 12 8 0.9289 1.8264 1.5397 13 8 0.8950 2.0652 3.7462 14 6 0.0967 3.2657 3.5735 15 6 -0.0693 3.9664 4.9235 16 6 -0.6340 3.1160 6.0321 17 1 -0.2950 3.2576 7.0476 18 6 -1.5839 2.1572 5.7498 19 7 -1.9515 1.9420 4.5055 20 14 -2.3485 1.1638 7.1346 21 1 -3.0339 2.0801 8.0811 22 1 -3.3335 0.2058 6.5713 23 1 -1.2855 0.4154 7.8524 24 6 -0.4464 5.4491 4.9083 25 6 0.9698 5.0232 5.3033 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 3.1633 -2.3937 0.8027 30 1 3.7781 -3.2748 3.0154 31 1 3.2196 -2.0125 5.0519 32 1 2.0418 0.1400 4.8861 33 1 0.5962 3.9368 2.8748 34 1 -0.8839 2.9966 3.1808 35 1 -2.6704 1.3200 4.3129 36 1 -0.5766 5.9253 3.9365 37 1 -1.1028 5.8095 5.7003 38 1 1.2446 5.1037 6.3551 39 1 1.7719 5.2190 4.5917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:54 Heat of formation + Delta-G solvation = -95.516824 kcal Electronic energy + Delta-G solvation = -26191.761425 eV Core-core repulsion = 22386.300275 eV Total energy + Delta-G solvation = -3805.461151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65201 -39.84606 -38.69603 -37.92715 -36.93546 -36.78115 -34.18523 -32.68019 -32.38286 -30.29174 -28.48878 -27.43636 -25.32533 -24.15215 -23.04051 -22.09848 -21.11099 -20.01614 -19.27528 -18.61154 -18.21087 -17.52968 -17.24789 -17.03283 -16.91010 -16.54993 -16.06324 -15.78949 -15.55756 -15.30757 -14.92666 -14.40073 -14.09185 -14.00432 -13.82751 -13.59880 -13.33547 -13.26927 -13.05843 -12.94438 -12.86953 -12.65327 -12.64507 -12.31901 -12.13970 -12.06222 -11.76577 -11.59516 -11.29280 -11.23590 -10.89796 -10.68574 -10.49212 -10.20591 -10.15861 -8.00053 -6.18281 -0.88423 -0.62016 -0.01380 1.44649 1.45897 1.47541 1.53239 1.75781 1.91441 2.43112 2.45829 2.88420 3.02601 3.29726 3.49448 3.66963 3.79033 3.93415 4.04108 4.12399 4.19181 4.27538 4.36655 4.40469 4.43940 4.59424 4.73662 4.78931 4.89538 4.91636 4.94901 5.00879 5.10376 5.17933 5.24315 5.42572 5.50172 5.69554 5.73544 5.85289 6.32943 6.71384 6.85264 7.45152 8.94029 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.004965 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.373481 B = 5638.658426 C = 6368.991646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.515 3.485 3 O -0.960 6.960 4 O -0.969 6.969 5 C -0.623 4.623 6 C -0.041 4.041 7 C -0.095 4.095 8 C -0.073 4.073 9 C -0.089 4.089 10 C -0.056 4.056 11 C 0.470 3.530 12 O -0.514 6.514 13 O -0.318 6.318 14 C 0.127 3.873 15 C 0.006 3.994 16 C -0.495 4.495 17 H 0.056 0.944 18 C 0.034 3.966 19 N -0.905 5.905 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.184 4.184 25 C -0.193 4.193 26 H 0.127 0.873 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.139 0.861 33 H 0.026 0.974 34 H 0.099 0.901 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -11.061 -3.512 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.697 3.303 3 O -0.957 6.957 4 O -0.966 6.966 5 C -0.708 4.708 6 C -0.060 4.060 7 C -0.113 4.113 8 C -0.090 4.090 9 C -0.108 4.108 10 C -0.057 4.057 11 C 0.316 3.684 12 O -0.408 6.408 13 O -0.232 6.232 14 C 0.053 3.947 15 C 0.005 3.995 16 C -0.532 4.532 17 H 0.074 0.926 18 C -0.166 4.166 19 N -0.543 5.543 20 Si 0.779 3.221 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.222 4.222 25 C -0.230 4.230 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.189 0.811 30 H 0.202 0.798 31 H 0.193 0.807 32 H 0.157 0.843 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.218 -10.788 -4.525 13.746 hybrid contribution -1.184 0.063 1.258 1.728 sum 6.034 -10.725 -3.267 12.733 Atomic orbital electron populations 1.30229 1.22315 1.12855 1.13286 1.04518 0.79097 0.73366 0.73352 1.93576 1.78864 1.37543 1.85734 1.93492 1.79288 1.62447 1.61379 1.30718 1.13731 1.06905 1.19489 1.21385 0.92041 0.91344 1.01182 1.22080 0.97187 1.01205 0.90859 1.21936 0.93399 0.92142 1.01561 1.21859 0.95618 0.97039 0.96318 1.18816 1.00023 0.91411 0.95495 1.21828 0.77585 0.85733 0.83280 1.90794 1.52769 1.69389 1.27853 1.86493 1.64041 1.39170 1.33458 1.22793 0.94503 0.80890 0.96478 1.19106 0.98947 0.87677 0.93724 1.20632 1.22769 1.17192 0.92580 0.92590 1.25568 0.96895 0.96678 0.97477 1.69900 1.28840 1.36822 1.18744 0.85692 0.78286 0.78538 0.79593 1.20000 1.21107 1.19445 1.23002 0.97910 0.99975 1.01335 1.22976 0.91823 1.07269 1.00932 0.85513 0.83232 0.83157 0.81113 0.79782 0.80700 0.84277 0.95536 0.88361 0.92954 0.90081 0.89526 0.89544 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -16.92 10.14 113.37 1.15 -15.77 16 2 S 2.52 79.04 5.14 -56.49 -0.29 78.75 16 3 O -0.96 -39.40 14.83 -118.12 -1.75 -41.15 16 4 O -0.97 -30.19 16.74 -127.65 -2.14 -32.33 16 5 C -0.62 -18.77 5.61 22.54 0.13 -18.64 16 6 C -0.04 -0.91 9.49 22.23 0.21 -0.70 16 7 C -0.10 -1.58 10.04 22.33 0.22 -1.36 16 8 C -0.07 -1.43 10.03 22.23 0.22 -1.21 16 9 C -0.09 -2.65 9.62 22.54 0.22 -2.43 16 10 C -0.06 -1.95 5.86 -20.10 -0.12 -2.07 16 11 C 0.47 20.34 7.46 70.33 0.52 20.87 16 12 O -0.51 -23.03 8.79 27.93 0.25 -22.79 16 13 O -0.32 -15.19 9.03 -56.23 -0.51 -15.69 16 14 C 0.13 6.25 4.45 71.98 0.32 6.57 16 15 C 0.01 0.29 2.20 -52.93 -0.12 0.17 16 16 C -0.49 -25.69 8.80 25.60 0.23 -25.46 16 17 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.03 1.73 5.35 84.66 0.45 2.18 16 19 N -0.90 -47.70 10.19 21.45 0.22 -47.49 16 20 Si 0.95 40.65 29.54 68.60 2.03 42.67 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 C -0.18 -7.89 9.96 30.62 0.30 -7.58 16 25 C -0.19 -8.10 9.93 30.62 0.30 -7.79 16 26 H 0.13 4.23 5.43 -2.39 -0.01 4.22 16 27 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.17 3.04 7.21 -2.91 -0.02 3.02 16 30 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 4.44 7.61 -2.91 -0.02 4.42 16 33 H 0.03 1.28 7.92 -2.39 -0.02 1.26 16 34 H 0.10 5.27 5.90 -2.39 -0.01 5.25 16 35 H 0.26 13.24 8.32 -92.71 -0.77 12.47 16 36 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 38 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -70.28 339.68 2.93 -67.36 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.07 Total: 23.91 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 4.05 Total: -53.24 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.22 Total: -47.49 kcal Atomic # 8 Polarization: -107.81 SS G_CDS: -4.15 Total: -111.96 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 79.04 SS G_CDS: -0.29 Total: 78.75 kcal Total: -70.28 2.93 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.161 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds